Wall clock time and date at job start Tue Mar 31 2020 02:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.47104 * 120.00095 * 2 1 4 4 O 1.21610 * 120.00339 * 80.05400 * 3 2 1 5 5 N 1.34780 * 119.99646 * 260.05242 * 3 2 1 6 6 C 1.46498 * 119.99936 * 185.03262 * 5 3 2 7 7 C 1.50697 * 109.47035 * 89.99783 * 6 5 3 8 8 H 1.07997 * 120.00464 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99706 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00018 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47138 * 90.00296 * 11 9 7 13 13 H 1.48502 * 109.47248 * 210.00625 * 11 9 7 14 14 H 1.48506 * 109.46848 * 330.00365 * 11 9 7 15 15 C 1.46499 * 119.99964 * 5.03401 * 5 3 2 16 16 C 1.52997 * 109.47526 * 85.41075 * 15 5 3 17 17 C 1.53007 * 109.46753 * 64.99860 * 16 15 5 18 18 C 1.52992 * 109.47562 * 184.99928 * 16 15 5 19 19 C 1.32992 * 119.99841 * 179.97438 * 2 1 3 20 20 C 1.51452 * 126.34290 * 0.02562 * 19 2 1 21 21 C 1.54271 * 106.85053 * 180.33618 * 20 19 2 22 22 C 1.54984 * 103.75407 * 23.12487 * 21 20 19 23 23 C 1.51840 * 126.34282 * 179.97438 * 19 2 1 24 24 H 1.09004 * 109.47514 * 264.95367 * 1 2 3 25 25 H 1.09006 * 109.46930 * 24.95540 * 1 2 3 26 26 H 1.09003 * 109.47314 * 144.95051 * 1 2 3 27 27 H 1.09003 * 109.47158 * 210.00447 * 6 5 3 28 28 H 1.09001 * 109.47030 * 329.99902 * 6 5 3 29 29 H 0.96996 * 119.99456 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.46795 * 205.41365 * 15 5 3 31 31 H 1.09004 * 109.47030 * 325.40925 * 15 5 3 32 32 H 1.09005 * 109.47251 * 305.00247 * 16 15 5 33 33 H 1.09005 * 109.46716 * 180.02562 * 17 16 15 34 34 H 1.08997 * 109.47119 * 299.99880 * 17 16 15 35 35 H 1.08994 * 109.47417 * 60.00224 * 17 16 15 36 36 H 1.09000 * 109.47210 * 59.99784 * 18 16 15 37 37 H 1.09004 * 109.47219 * 180.02562 * 18 16 15 38 38 H 1.09002 * 109.47228 * 299.99901 * 18 16 15 39 39 H 1.09004 * 109.98636 * 299.68580 * 20 19 2 40 40 H 1.09001 * 109.98343 * 60.98766 * 20 19 2 41 41 H 1.09000 * 110.57126 * 141.69537 * 21 20 19 42 42 H 1.09002 * 110.57082 * 264.55616 * 21 20 19 43 43 H 1.08999 * 110.83457 * 204.70673 * 22 21 20 44 44 H 1.09001 * 110.83123 * 81.12593 * 22 21 20 45 45 H 1.09005 * 110.44121 * 274.96980 * 23 19 2 46 46 H 1.09003 * 110.44183 * 37.36981 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 2.3891 1.8915 1.0373 5 7 2.7541 1.7567 -1.1497 6 6 3.5798 2.9667 -1.1330 7 6 5.0255 2.5856 -0.9441 8 1 5.3018 1.5462 -0.8467 9 6 5.9958 3.5642 -0.8966 10 7 5.6594 4.8301 -1.0157 11 14 7.7879 3.0919 -0.6632 12 1 8.4203 2.8780 -1.9897 13 1 8.4977 4.1817 0.0537 14 1 7.8705 1.8405 0.1321 15 6 2.4844 1.0714 -2.4161 16 6 1.1511 1.5593 -2.9863 17 6 1.2620 3.0428 -3.3444 18 6 0.8088 0.7557 -4.2424 19 6 2.1719 -1.1518 0.0005 20 6 1.5642 -2.5390 0.0006 21 6 2.7371 -3.5411 0.0099 22 6 3.9131 -2.7263 0.6058 23 6 3.6810 -1.3196 0.0000 24 1 -0.3634 -0.0904 1.0237 25 1 -0.3633 0.9318 -0.4336 26 1 -0.3634 -0.8413 -0.5902 27 1 3.4645 3.4983 -2.0775 28 1 3.2637 3.6109 -0.3125 29 1 6.3420 5.5184 -0.9820 30 1 3.2838 1.2889 -3.1244 31 1 2.4342 -0.0038 -2.2439 32 1 0.3661 1.4228 -2.2425 33 1 0.3119 3.3905 -3.7502 34 1 1.5058 3.6153 -2.4495 35 1 2.0469 3.1793 -4.0881 36 1 0.7299 -0.3011 -3.9873 37 1 -0.1409 1.1037 -4.6488 38 1 1.5938 0.8923 -4.9862 39 1 0.9496 -2.6765 0.8903 40 1 0.9600 -2.6810 -0.8954 41 1 2.5044 -4.3971 0.6434 42 1 2.9712 -3.8661 -1.0038 43 1 4.8706 -3.1343 0.2823 44 1 3.8513 -2.6954 1.6937 45 1 4.0688 -1.2744 -1.0177 46 1 4.1493 -0.5544 0.6193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753595869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:55 Heat of formation + Delta-G solvation = -53.834172 kcal Electronic energy + Delta-G solvation = -23451.958103 eV Core-core repulsion = 20340.526953 eV Total energy + Delta-G solvation = -3111.431150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.55749 -37.66136 -36.20099 -33.60338 -33.12310 -32.12654 -28.91566 -27.69753 -27.48910 -26.80768 -25.51000 -24.11932 -22.34418 -20.67803 -20.24341 -19.23018 -17.10454 -16.50530 -16.10477 -15.81390 -15.41935 -14.66084 -14.47160 -14.13368 -13.95019 -13.33386 -13.22231 -13.07503 -12.81451 -12.50994 -12.34936 -12.15637 -12.00409 -11.87227 -11.69993 -11.47485 -11.27924 -11.06520 -10.96184 -10.91552 -10.87938 -10.80049 -10.66662 -10.54712 -10.38886 -10.24599 -10.08579 -9.55659 -8.86764 -8.42584 -8.32348 -7.55214 -6.01508 -4.05792 2.12707 3.30549 3.37344 3.40681 3.49794 4.05243 4.45666 4.60821 4.79464 5.02256 5.05672 5.19899 5.23158 5.24674 5.32830 5.42809 5.49482 5.55761 5.65694 5.75409 5.78690 5.82666 5.86754 5.89365 5.90232 5.91721 6.06593 6.08349 6.13055 6.14138 6.22401 6.25695 6.34320 6.35478 6.38922 6.59831 6.67159 6.73066 7.00891 7.17094 7.50394 7.63023 7.96036 8.28060 8.50883 8.93783 9.16903 9.59125 11.06380 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012779 B = 0.007086 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.538445 B = 3950.499264 C = 5162.061676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.149 4.149 3 C 0.553 3.447 4 O -0.543 6.543 5 N -0.587 5.587 6 C 0.243 3.757 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.118 3.882 16 C -0.115 4.115 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.099 4.099 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.098 4.098 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -14.235 -4.161 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.152 4.152 3 C 0.339 3.661 4 O -0.421 6.421 5 N -0.317 5.317 6 C 0.124 3.876 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C -0.006 4.006 16 C -0.135 4.135 17 C -0.204 4.204 18 C -0.199 4.199 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.135 4.135 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.715 -13.688 -3.626 17.173 hybrid contribution 1.105 -0.120 0.052 1.113 sum -8.610 -13.808 -3.573 16.660 Atomic orbital electron populations 1.20597 0.90539 1.02226 1.02067 1.20933 0.96178 0.92807 1.05264 1.18199 0.78985 0.84756 0.84139 1.90764 1.59901 1.59697 1.31787 1.48171 1.49530 1.28962 1.05051 1.19360 0.88628 0.81235 0.98388 1.21455 0.91645 0.93309 1.49921 0.92502 1.24920 0.99077 0.94831 0.95221 1.69934 1.33665 0.99435 1.50312 0.86549 0.84820 0.78258 0.78120 1.20689 1.21121 1.19909 1.21498 0.96227 0.96217 0.86693 1.21623 0.98342 0.96206 0.97286 1.21878 1.00678 0.95547 1.02282 1.21758 1.01145 0.99499 0.97543 1.22302 0.95886 0.93143 0.98615 1.21132 0.97827 0.91681 1.01863 1.22356 0.95235 0.97442 1.00976 1.22486 0.98106 0.95026 1.00284 1.21488 0.92681 0.97467 1.01887 0.91291 0.91834 0.91594 0.94467 0.94032 0.92786 0.90240 0.91594 0.91356 0.93672 0.91580 0.92612 0.92973 0.92939 0.92621 0.90920 0.90852 0.91650 0.91484 0.91378 0.91418 0.90151 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 9.26 36.01 0.33 -0.95 16 2 C -0.15 -2.48 4.29 -102.85 -0.44 -2.92 16 3 C 0.55 12.07 6.16 -12.66 -0.08 11.99 16 4 O -0.54 -14.52 16.66 5.27 0.09 -14.43 16 5 N -0.59 -12.57 2.21 -176.46 -0.39 -12.95 16 6 C 0.24 6.35 4.27 -5.20 -0.02 6.33 16 7 C -0.52 -14.84 9.39 -34.44 -0.32 -15.16 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.76 5.46 -17.81 -0.10 1.66 16 10 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 11 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.12 2.00 4.66 -4.04 -0.02 1.98 16 16 C -0.11 -1.65 3.10 -90.62 -0.28 -1.93 16 17 C -0.15 -2.27 8.30 37.16 0.31 -1.96 16 18 C -0.14 -1.60 9.19 37.15 0.34 -1.25 16 19 C -0.10 -1.46 5.18 -100.24 -0.52 -1.98 16 20 C -0.09 -0.97 5.60 -26.85 -0.15 -1.13 16 21 C -0.12 -1.24 6.87 -25.02 -0.17 -1.42 16 22 C -0.12 -1.49 6.95 -24.67 -0.17 -1.67 16 23 C -0.10 -1.54 6.07 -26.31 -0.16 -1.70 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.86 6.82 -51.93 -0.35 0.50 16 26 H 0.07 0.69 7.35 -51.93 -0.38 0.31 16 27 H 0.04 0.97 6.51 -51.93 -0.34 0.64 16 28 H 0.04 1.25 7.36 -51.93 -0.38 0.86 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 30 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 31 H 0.07 1.02 6.26 -51.93 -0.32 0.69 16 32 H 0.07 0.98 6.33 -51.93 -0.33 0.65 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.22 6.25 -51.93 -0.32 0.89 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.71 7.92 -51.93 -0.41 0.30 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.08 1.51 7.80 -51.93 -0.41 1.10 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -32.36 362.22 -8.86 -41.22 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.29 Total: -0.19 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.45 Total: -10.11 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.35 Total: -38.88 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.09 Total: -14.43 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.36 -8.86 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753595869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.611 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds