Wall clock time and date at job start Tue Mar 31 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.47104 * 120.00095 * 2 1 4 4 O 1.21610 * 120.00339 * 80.05400 * 3 2 1 5 5 N 1.34780 * 119.99646 * 260.05242 * 3 2 1 6 6 C 1.46498 * 119.99936 * 185.03262 * 5 3 2 7 7 C 1.50697 * 109.47035 * 89.99783 * 6 5 3 8 8 H 1.07997 * 120.00464 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99706 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00018 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47138 * 90.00296 * 11 9 7 13 13 H 1.48502 * 109.47248 * 210.00625 * 11 9 7 14 14 H 1.48506 * 109.46848 * 330.00365 * 11 9 7 15 15 C 1.46499 * 119.99964 * 5.03401 * 5 3 2 16 16 C 1.52997 * 109.47526 * 85.41075 * 15 5 3 17 17 C 1.53007 * 109.46753 * 64.99860 * 16 15 5 18 18 C 1.52992 * 109.47562 * 184.99928 * 16 15 5 19 19 C 1.32992 * 119.99841 * 179.97438 * 2 1 3 20 20 C 1.51452 * 126.34290 * 0.02562 * 19 2 1 21 21 C 1.54271 * 106.85053 * 180.33618 * 20 19 2 22 22 C 1.54984 * 103.75407 * 23.12487 * 21 20 19 23 23 C 1.51840 * 126.34282 * 179.97438 * 19 2 1 24 24 H 1.09004 * 109.47514 * 264.95367 * 1 2 3 25 25 H 1.09006 * 109.46930 * 24.95540 * 1 2 3 26 26 H 1.09003 * 109.47314 * 144.95051 * 1 2 3 27 27 H 1.09003 * 109.47158 * 210.00447 * 6 5 3 28 28 H 1.09001 * 109.47030 * 329.99902 * 6 5 3 29 29 H 0.96996 * 119.99456 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.46795 * 205.41365 * 15 5 3 31 31 H 1.09004 * 109.47030 * 325.40925 * 15 5 3 32 32 H 1.09005 * 109.47251 * 305.00247 * 16 15 5 33 33 H 1.09005 * 109.46716 * 180.02562 * 17 16 15 34 34 H 1.08997 * 109.47119 * 299.99880 * 17 16 15 35 35 H 1.08994 * 109.47417 * 60.00224 * 17 16 15 36 36 H 1.09000 * 109.47210 * 59.99784 * 18 16 15 37 37 H 1.09004 * 109.47219 * 180.02562 * 18 16 15 38 38 H 1.09002 * 109.47228 * 299.99901 * 18 16 15 39 39 H 1.09004 * 109.98636 * 299.68580 * 20 19 2 40 40 H 1.09001 * 109.98343 * 60.98766 * 20 19 2 41 41 H 1.09000 * 110.57126 * 141.69537 * 21 20 19 42 42 H 1.09002 * 110.57082 * 264.55616 * 21 20 19 43 43 H 1.08999 * 110.83457 * 204.70673 * 22 21 20 44 44 H 1.09001 * 110.83123 * 81.12593 * 22 21 20 45 45 H 1.09005 * 110.44121 * 274.96980 * 23 19 2 46 46 H 1.09003 * 110.44183 * 37.36981 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 2.3891 1.8915 1.0373 5 7 2.7541 1.7567 -1.1497 6 6 3.5798 2.9667 -1.1330 7 6 5.0255 2.5856 -0.9441 8 1 5.3018 1.5462 -0.8467 9 6 5.9958 3.5642 -0.8966 10 7 5.6594 4.8301 -1.0157 11 14 7.7879 3.0919 -0.6632 12 1 8.4203 2.8780 -1.9897 13 1 8.4977 4.1817 0.0537 14 1 7.8705 1.8405 0.1321 15 6 2.4844 1.0714 -2.4161 16 6 1.1511 1.5593 -2.9863 17 6 1.2620 3.0428 -3.3444 18 6 0.8088 0.7557 -4.2424 19 6 2.1719 -1.1518 0.0005 20 6 1.5642 -2.5390 0.0006 21 6 2.7371 -3.5411 0.0099 22 6 3.9131 -2.7263 0.6058 23 6 3.6810 -1.3196 0.0000 24 1 -0.3634 -0.0904 1.0237 25 1 -0.3633 0.9318 -0.4336 26 1 -0.3634 -0.8413 -0.5902 27 1 3.4645 3.4983 -2.0775 28 1 3.2637 3.6109 -0.3125 29 1 6.3420 5.5184 -0.9820 30 1 3.2838 1.2889 -3.1244 31 1 2.4342 -0.0038 -2.2439 32 1 0.3661 1.4228 -2.2425 33 1 0.3119 3.3905 -3.7502 34 1 1.5058 3.6153 -2.4495 35 1 2.0469 3.1793 -4.0881 36 1 0.7299 -0.3011 -3.9873 37 1 -0.1409 1.1037 -4.6488 38 1 1.5938 0.8923 -4.9862 39 1 0.9496 -2.6765 0.8903 40 1 0.9600 -2.6810 -0.8954 41 1 2.5044 -4.3971 0.6434 42 1 2.9712 -3.8661 -1.0038 43 1 4.8706 -3.1343 0.2823 44 1 3.8513 -2.6954 1.6937 45 1 4.0688 -1.2744 -1.0177 46 1 4.1493 -0.5544 0.6193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753595869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:54 Heat of formation + Delta-G solvation = -72.061452 kcal Electronic energy + Delta-G solvation = -23452.748497 eV Core-core repulsion = 20340.526953 eV Total energy + Delta-G solvation = -3112.221545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13338 -38.85985 -37.75163 -35.46652 -34.40591 -33.98154 -30.09131 -29.54651 -28.49833 -27.97604 -26.98591 -25.82183 -23.95492 -21.85345 -21.46509 -20.56306 -18.75804 -18.54354 -17.53784 -17.31425 -16.66213 -16.34330 -16.07545 -15.61659 -15.24577 -14.71052 -14.44231 -14.27436 -14.15819 -14.00137 -13.76138 -13.46184 -13.26433 -13.15391 -13.09760 -12.97855 -12.85242 -12.68363 -12.56784 -12.21542 -12.13161 -12.03756 -11.95266 -11.90599 -11.82576 -11.57003 -11.48914 -11.44131 -10.66144 -10.59659 -9.60025 -9.38797 -8.24481 -6.39341 0.87630 1.31610 1.34977 1.45067 1.79923 2.30138 2.47801 3.04334 3.44921 3.77952 3.82646 3.97771 4.05445 4.15461 4.16593 4.26222 4.43751 4.50490 4.61802 4.66895 4.74034 4.77404 4.80874 4.87572 4.88553 4.91567 4.93927 5.03266 5.03798 5.05623 5.11543 5.13688 5.15547 5.22594 5.24606 5.28187 5.43683 5.45985 5.48592 5.50261 5.58450 5.80860 5.88358 6.05950 6.67794 6.78188 7.25130 7.45448 8.82478 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012779 B = 0.007086 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.538445 B = 3950.499264 C = 5162.061676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.171 4.171 3 C 0.545 3.455 4 O -0.610 6.610 5 N -0.588 5.588 6 C 0.262 3.738 7 C -0.542 4.542 8 H 0.051 0.949 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.965 3.035 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.274 1.274 15 C 0.116 3.884 16 C -0.108 4.108 17 C -0.145 4.145 18 C -0.133 4.133 19 C -0.084 4.084 20 C -0.083 4.083 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.108 4.108 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.105 0.895 27 H 0.031 0.969 28 H -0.011 1.011 29 H 0.267 0.733 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.023 0.977 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 -18.084 -5.734 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.174 4.174 3 C 0.334 3.666 4 O -0.493 6.493 5 N -0.316 5.316 6 C 0.141 3.859 7 C -0.581 4.581 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.567 5.567 11 Si 0.789 3.211 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.199 1.199 15 C -0.006 4.006 16 C -0.127 4.127 17 C -0.202 4.202 18 C -0.191 4.191 19 C -0.085 4.085 20 C -0.119 4.119 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.145 4.145 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.049 0.951 28 H 0.007 0.993 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.762 -17.569 -5.249 21.262 hybrid contribution 1.476 1.130 0.554 1.940 sum -9.286 -16.440 -4.695 19.456 Atomic orbital electron populations 1.20636 0.87506 1.03448 1.03033 1.20801 0.97831 0.90204 1.08546 1.19185 0.78330 0.86129 0.82919 1.90708 1.62465 1.62099 1.34004 1.48158 1.48574 1.27700 1.07169 1.18789 0.88682 0.82680 0.95751 1.21704 0.92877 0.93168 1.50320 0.93064 1.25844 1.03939 0.94680 0.94571 1.70059 1.35348 1.00508 1.50796 0.85462 0.78964 0.77836 0.78867 1.18573 1.20518 1.19876 1.21759 0.97545 0.97042 0.84280 1.21578 0.96539 0.95562 0.99066 1.21852 1.01766 0.96374 1.00258 1.21701 1.01986 0.99998 0.95394 1.22664 0.95386 0.94825 0.95614 1.21244 0.98442 0.88334 1.03930 1.22370 0.93171 0.97389 1.02138 1.22497 1.00160 0.92995 1.00004 1.21566 0.93508 0.98416 1.01039 0.90935 0.92744 0.87620 0.95121 0.99266 0.92409 0.91451 0.89375 0.90971 0.91115 0.95742 0.93148 0.90950 0.91152 0.92562 0.89406 0.87875 0.89233 0.90008 0.90391 0.91869 0.90320 0.95622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.17 9.26 71.24 0.66 -1.51 16 2 C -0.17 -5.64 4.29 -18.70 -0.08 -5.72 16 3 C 0.54 25.23 6.16 86.57 0.53 25.77 16 4 O -0.61 -35.40 16.66 -4.06 -0.07 -35.47 16 5 N -0.59 -26.73 2.21 -830.44 -1.83 -28.56 16 6 C 0.26 14.85 4.27 85.63 0.37 15.22 16 7 C -0.54 -32.45 9.39 25.60 0.24 -32.21 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.01 0.51 5.46 84.66 0.46 0.97 16 10 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 11 Si 0.96 46.18 29.54 68.60 2.03 48.21 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.12 3.97 4.66 86.38 0.40 4.37 16 16 C -0.11 -2.98 3.10 -10.80 -0.03 -3.02 16 17 C -0.15 -4.59 8.30 71.98 0.60 -3.99 16 18 C -0.13 -2.54 9.19 71.98 0.66 -1.88 16 19 C -0.08 -2.36 5.18 -17.01 -0.09 -2.44 16 20 C -0.08 -1.44 5.60 30.52 0.17 -1.27 16 21 C -0.11 -1.77 6.87 31.70 0.22 -1.55 16 22 C -0.12 -2.69 6.95 31.93 0.22 -2.47 16 23 C -0.11 -3.40 6.07 30.87 0.19 -3.21 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.40 6.82 -2.38 -0.02 1.38 16 26 H 0.11 1.70 7.35 -2.39 -0.02 1.68 16 27 H 0.03 1.75 6.51 -2.39 -0.02 1.73 16 28 H -0.01 -0.72 7.36 -2.39 -0.02 -0.73 16 29 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16 31 H 0.09 2.60 6.26 -2.39 -0.01 2.58 16 32 H 0.07 1.97 6.33 -2.38 -0.02 1.96 16 33 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.02 0.95 6.25 -2.39 -0.01 0.93 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.10 1.30 7.92 -2.39 -0.02 1.28 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 46 H 0.02 1.05 7.80 -2.39 -0.02 1.03 16 Total: -1.00 -78.26 362.22 5.86 -72.40 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.93 Total: 13.76 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 4.52 Total: -12.94 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.55 Total: -85.96 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.07 Total: -35.47 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -78.26 5.86 -72.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753595869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.343 kcal (2) G-P(sol) polarization free energy of solvation -78.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds