Wall clock time and date at job start Tue Mar 31 2020 02:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 C 1.53001 * 109.47638 * 119.99932 * 2 1 3 5 5 N 1.46506 * 109.47002 * 64.99934 * 4 2 1 6 6 C 1.46498 * 120.00080 * 270.00348 * 5 4 2 7 7 C 1.50701 * 109.47093 * 270.00104 * 6 5 4 8 8 H 1.07995 * 120.00228 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99975 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99755 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99763 * 359.97438 * 9 7 6 12 12 H 1.48509 * 109.47069 * 90.00032 * 11 9 7 13 13 H 1.48499 * 109.46927 * 209.99824 * 11 9 7 14 14 H 1.48493 * 109.47524 * 330.00088 * 11 9 7 15 15 C 1.34769 * 119.99707 * 90.00222 * 5 4 2 16 16 O 1.21286 * 119.99891 * 180.02562 * 15 5 4 17 17 C 1.50702 * 120.00464 * 359.97438 * 15 5 4 18 18 C 1.53000 * 109.47248 * 179.97438 * 17 15 5 19 19 H 1.08992 * 109.25008 * 305.34882 * 18 17 15 20 20 C 1.50070 * 109.35446 * 65.00256 * 18 17 15 21 21 C 1.29452 * 124.07339 * 137.07573 * 20 18 17 22 22 C 1.50059 * 124.07349 * 359.78991 * 21 20 18 23 23 C 1.53022 * 110.14950 * 17.13248 * 22 21 20 24 24 C 1.52871 * 109.45736 * 185.85322 * 18 17 15 25 25 H 1.09004 * 109.47142 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47438 * 299.99811 * 1 2 3 27 27 H 1.08994 * 109.47442 * 60.00252 * 1 2 3 28 28 H 1.09004 * 109.47438 * 240.00189 * 2 1 3 29 29 H 1.08995 * 109.47527 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47045 * 300.00283 * 3 2 1 31 31 H 1.09000 * 109.47071 * 60.00192 * 3 2 1 32 32 H 1.09000 * 109.47095 * 305.00265 * 4 2 1 33 33 H 1.08994 * 109.47778 * 185.00020 * 4 2 1 34 34 H 1.09004 * 109.47079 * 29.99793 * 6 5 4 35 35 H 1.09000 * 109.47171 * 149.99724 * 6 5 4 36 36 H 0.97000 * 119.99642 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.46618 * 60.00003 * 17 15 5 38 38 H 1.08995 * 109.47212 * 300.00335 * 17 15 5 39 39 H 1.08002 * 117.96604 * 317.36210 * 20 18 17 40 40 H 1.08001 * 117.96054 * 179.81381 * 21 20 18 41 41 H 1.09001 * 109.35841 * 137.33844 * 22 21 20 42 42 H 1.09000 * 109.35974 * 257.06125 * 22 21 20 43 43 H 1.09003 * 109.64238 * 70.24891 * 23 22 21 44 44 H 1.09005 * 109.64041 * 190.66482 * 23 22 21 45 45 H 1.08996 * 109.69651 * 70.78449 * 24 18 17 46 46 H 1.08993 * 109.44648 * 310.24335 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 -2.1329 1.1906 6 6 0.3747 -2.5660 1.7613 7 6 0.5718 -2.9408 3.2076 8 1 1.5510 -2.8645 3.6566 9 6 -0.4981 -3.3813 3.9576 10 7 -0.3260 -3.7088 5.2196 11 14 -2.1920 -3.5126 3.1811 12 1 -2.3644 -4.8663 2.5952 13 1 -3.2307 -3.2860 4.2179 14 1 -2.3275 -2.4901 2.1129 15 6 2.4716 -3.0330 0.6116 16 8 2.1505 -4.2015 0.5626 17 6 3.7858 -2.5874 0.0239 18 6 4.5168 -3.7954 -0.5652 19 1 4.6138 -4.5652 0.2003 20 6 3.7280 -4.3393 -1.7203 21 6 4.2517 -4.7181 -2.8419 22 6 5.7202 -4.6619 -3.1455 23 6 6.5210 -4.5140 -1.8499 24 6 5.9100 -3.3708 -1.0298 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 -0.3484 -1.7532 1.6919 35 1 0.0043 -3.4298 1.2092 36 1 -1.0787 -4.0183 5.7473 37 1 4.3989 -2.1375 0.8048 38 1 3.6026 -1.8544 -0.7617 39 1 2.6563 -4.4154 -1.6106 40 1 3.5906 -5.0977 -3.6069 41 1 6.0197 -5.5792 -3.6525 42 1 5.9231 -3.8086 -3.7927 43 1 6.4705 -5.4417 -1.2800 44 1 7.5604 -4.2850 -2.0858 45 1 6.5388 -3.1643 -0.1638 46 1 5.8294 -2.4777 -1.6492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778604624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:13 Heat of formation + Delta-G solvation = -67.065101 kcal Electronic energy + Delta-G solvation = -22894.567846 eV Core-core repulsion = 19782.562959 eV Total energy + Delta-G solvation = -3112.004887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13615 -39.25382 -37.73558 -35.36607 -34.17661 -33.58338 -31.84597 -30.62467 -28.08149 -27.92203 -26.81524 -24.50268 -23.12975 -22.68354 -21.38513 -19.74006 -19.15303 -18.77848 -17.81189 -17.27214 -16.82325 -16.43515 -16.01184 -15.59705 -15.04620 -15.01860 -14.89443 -14.35868 -14.22903 -13.80997 -13.80141 -13.53876 -13.45278 -13.30598 -13.08944 -12.96711 -12.90923 -12.63610 -12.52183 -12.37493 -12.12421 -11.96941 -11.79142 -11.67367 -11.56452 -11.52234 -11.33599 -10.98596 -10.83702 -10.46150 -9.84559 -9.31656 -8.35881 -6.39562 1.28151 1.32224 1.40485 1.44622 1.87515 2.27895 2.36641 2.98615 3.64466 3.83855 3.87238 3.94986 4.03325 4.06039 4.22729 4.32569 4.42396 4.49872 4.53236 4.65321 4.68651 4.73693 4.75573 4.80628 4.83735 4.89698 4.91835 4.97265 4.99454 5.08701 5.11232 5.12503 5.12659 5.25286 5.29197 5.44170 5.44998 5.47225 5.52689 5.53592 5.71396 5.84492 6.12427 6.24812 6.61498 6.77190 7.21280 7.49670 8.81316 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.005258 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.960550 B = 5324.018479 C = 6269.945437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.109 3.891 5 N -0.598 5.598 6 C 0.226 3.774 7 C -0.533 4.533 8 H 0.028 0.972 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.942 3.058 12 H -0.278 1.278 13 H -0.272 1.272 14 H -0.240 1.240 15 C 0.495 3.505 16 O -0.592 6.592 17 C -0.118 4.118 18 C -0.043 4.043 19 H 0.053 0.947 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.086 4.086 23 C -0.121 4.121 24 C -0.108 4.108 25 H 0.033 0.967 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.010 0.990 36 H 0.268 0.732 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.540 9.422 -17.883 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.195 4.195 4 C -0.013 4.013 5 N -0.328 5.328 6 C 0.104 3.896 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.197 1.197 14 H -0.163 1.163 15 C 0.284 3.716 16 O -0.473 6.473 17 C -0.158 4.158 18 C -0.061 4.061 19 H 0.071 0.929 20 C -0.171 4.171 21 C -0.180 4.180 22 C -0.123 4.123 23 C -0.158 4.158 24 C -0.145 4.145 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.266 8.784 -17.741 22.778 hybrid contribution -1.422 -0.839 0.725 1.804 sum 9.843 7.945 -17.016 21.203 Atomic orbital electron populations 1.21952 0.96123 1.00835 1.02064 1.21525 0.95841 0.97698 0.97466 1.21732 1.01839 0.93398 1.02486 1.21878 1.01212 0.79369 0.98891 1.48000 1.19923 1.08840 1.56042 1.19341 0.83578 0.95253 0.91449 1.21606 0.95494 1.44318 0.95770 0.95346 1.25804 1.03526 0.94118 0.95109 1.70047 1.33179 1.46252 1.09073 0.85792 0.78842 0.79628 0.79197 1.20404 1.19741 1.16278 1.21460 0.87101 0.85243 0.77755 1.90626 1.76510 1.19805 1.60392 1.21760 0.92053 0.99914 1.02032 1.19781 0.95172 0.95729 0.95444 0.92916 1.22050 0.99080 1.00645 0.95275 1.22244 0.98147 1.00665 0.96969 1.20487 0.90707 1.03029 0.98064 1.21625 0.99907 0.98295 0.96005 1.21616 0.93135 0.99156 1.00579 0.94823 0.92896 0.91194 0.90847 0.90940 0.91366 0.92572 0.91385 0.88495 0.93026 0.97234 0.92316 0.87183 0.86645 0.90813 0.88098 0.90294 0.89272 0.93267 0.89287 0.90499 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.18 71.98 0.59 -3.49 16 2 C -0.11 -2.48 3.12 -10.80 -0.03 -2.52 16 3 C -0.14 -2.27 9.19 71.98 0.66 -1.61 16 4 C 0.11 3.27 4.70 86.38 0.41 3.68 16 5 N -0.60 -24.55 2.28 -826.15 -1.88 -26.43 16 6 C 0.23 11.31 3.30 85.63 0.28 11.59 16 7 C -0.53 -32.14 9.94 25.60 0.25 -31.88 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 9 C 0.01 0.74 5.47 84.66 0.46 1.21 16 10 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 11 Si 0.94 45.73 27.47 68.60 1.88 47.62 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 15 C 0.49 20.32 7.31 87.66 0.64 20.96 16 16 O -0.59 -30.36 13.87 -3.05 -0.04 -30.40 16 17 C -0.12 -3.28 3.69 29.85 0.11 -3.17 16 18 C -0.04 -1.19 2.11 -11.78 -0.02 -1.21 16 19 H 0.05 1.82 7.94 -2.39 -0.02 1.80 16 20 C -0.15 -4.58 8.42 27.03 0.23 -4.36 16 21 C -0.16 -3.91 9.80 27.03 0.26 -3.64 16 22 C -0.09 -1.49 6.11 29.65 0.18 -1.31 16 23 C -0.12 -2.10 6.01 30.73 0.18 -1.91 16 24 C -0.11 -2.03 5.30 30.68 0.16 -1.86 16 25 H 0.03 1.09 5.89 -2.38 -0.01 1.08 16 26 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.66 7.30 -2.38 -0.02 1.65 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 34 H 0.05 2.40 5.03 -2.38 -0.01 2.39 16 35 H 0.01 0.52 6.85 -2.39 -0.02 0.51 16 36 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 37 H 0.11 2.60 7.40 -2.39 -0.02 2.58 16 38 H 0.12 2.54 7.26 -2.39 -0.02 2.53 16 39 H 0.07 2.76 6.53 -2.91 -0.02 2.74 16 40 H 0.10 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 1.00 8.13 -2.39 -0.02 0.99 16 44 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 1.28 8.09 -2.39 -0.02 1.27 16 Total: -1.00 -77.49 353.62 5.49 -72.00 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.87 Total: 17.33 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 4.37 Total: -19.53 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -1.58 Total: -87.01 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.04 Total: -30.40 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.62 kcal Total: -77.49 5.49 -72.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778604624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.931 kcal (2) G-P(sol) polarization free energy of solvation -77.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds