Wall clock time and date at job start Tue Mar 31 2020 02:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47675 * 2 1 4 4 C 1.52999 * 109.47293 * 119.99959 * 2 1 3 5 5 N 1.46497 * 109.47362 * 174.13905 * 4 2 1 6 6 C 1.46492 * 120.00235 * 276.69372 * 5 4 2 7 7 C 1.50703 * 109.47658 * 270.00264 * 6 5 4 8 8 H 1.08006 * 119.99564 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00396 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00202 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47065 * 89.99629 * 11 9 7 13 13 H 1.48490 * 109.47287 * 209.99851 * 11 9 7 14 14 H 1.48498 * 109.47057 * 329.99931 * 11 9 7 15 15 C 1.34780 * 119.99597 * 96.69963 * 5 4 2 16 16 O 1.21282 * 119.99501 * 185.36796 * 15 5 4 17 17 C 1.50697 * 120.00304 * 5.36868 * 15 5 4 18 18 C 1.52996 * 109.47057 * 174.42480 * 17 15 5 19 19 H 1.08996 * 109.36315 * 54.72238 * 18 17 15 20 20 C 1.50068 * 109.35628 * 294.99551 * 18 17 15 21 21 C 1.29441 * 124.07689 * 222.66330 * 20 18 17 22 22 C 1.50070 * 124.07690 * 0.49093 * 21 20 18 23 23 C 1.53025 * 110.03306 * 342.91867 * 22 21 20 24 24 C 1.53028 * 109.35995 * 174.30776 * 18 17 15 25 25 H 1.08994 * 109.47095 * 300.00330 * 1 2 3 26 26 H 1.09009 * 109.46769 * 59.99849 * 1 2 3 27 27 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47364 * 239.99858 * 2 1 3 29 29 H 1.09001 * 109.46658 * 64.69567 * 3 2 1 30 30 H 1.08993 * 109.47544 * 184.69588 * 3 2 1 31 31 H 1.09001 * 109.47045 * 304.70437 * 3 2 1 32 32 H 1.09008 * 109.46989 * 54.14115 * 4 2 1 33 33 H 1.09005 * 109.47042 * 294.14410 * 4 2 1 34 34 H 1.09003 * 109.47139 * 30.00346 * 6 5 4 35 35 H 1.09004 * 109.47117 * 150.00226 * 6 5 4 36 36 H 0.96999 * 120.00426 * 180.02562 * 10 9 7 37 37 H 1.08993 * 109.47124 * 54.42252 * 17 15 5 38 38 H 1.08999 * 109.46984 * 294.42115 * 17 15 5 39 39 H 1.07999 * 117.96462 * 42.68980 * 20 18 17 40 40 H 1.07996 * 117.96404 * 180.47089 * 21 20 18 41 41 H 1.09002 * 109.35500 * 103.05135 * 22 21 20 42 42 H 1.08997 * 109.36461 * 222.77581 * 22 21 20 43 43 H 1.09004 * 109.63896 * 169.05044 * 23 22 21 44 44 H 1.08995 * 109.64384 * 289.67579 * 23 22 21 45 45 H 1.08991 * 109.64236 * 289.32835 * 24 18 17 46 46 H 1.09006 * 109.63742 * 49.74323 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.4982 -0.8446 1.1808 6 6 4.1057 -1.9437 0.4265 7 6 4.3004 -3.1297 1.3357 8 1 4.0018 -3.0705 2.3720 9 6 4.8607 -4.2899 0.8450 10 7 5.2248 -4.3619 -0.4167 11 14 5.1026 -5.7598 1.9721 12 1 3.8930 -6.6202 1.9302 13 1 6.2818 -6.5412 1.5204 14 1 5.3254 -5.2864 3.3619 15 6 4.2807 0.0531 1.8120 16 8 5.4851 0.0092 1.6760 17 6 3.6592 1.1114 2.6865 18 6 4.7626 1.9058 3.3881 19 1 5.4529 2.3011 2.6430 20 6 5.5073 1.0012 4.3257 21 6 5.8697 1.3365 5.5222 22 6 5.5866 2.6732 6.1430 23 6 5.2129 3.6862 5.0586 24 6 4.1369 3.0678 4.1627 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.7471 1.9314 0.9291 30 1 3.1268 1.4436 -0.0841 31 1 1.6096 1.9801 -0.8449 32 1 1.5935 -1.7142 1.3032 33 1 1.7648 -0.1504 2.1361 34 1 3.4516 -2.2226 -0.3995 35 1 5.0712 -1.6247 0.0337 36 1 5.6186 -5.1783 -0.7621 37 1 3.0218 0.6375 3.4330 38 1 3.0610 1.7847 2.0726 39 1 5.7568 0.0087 3.9806 40 1 6.4092 0.6091 6.1106 41 1 4.7604 2.5766 6.8474 42 1 6.4737 3.0211 6.6722 43 1 4.8230 4.5922 5.5224 44 1 6.0931 3.9259 4.4622 45 1 3.7663 3.8169 3.4632 46 1 3.3137 2.6990 4.7747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778604636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:18 Heat of formation + Delta-G solvation = -52.020361 kcal Electronic energy + Delta-G solvation = -22931.525848 eV Core-core repulsion = 19820.173350 eV Total energy + Delta-G solvation = -3111.352498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.65453 -38.06081 -36.21780 -33.70276 -32.42780 -32.15804 -30.85325 -28.24935 -27.08792 -26.52509 -25.32132 -23.10230 -22.15192 -21.44643 -20.16542 -18.10536 -17.74614 -16.51713 -16.40362 -15.78618 -15.35213 -14.93758 -14.46588 -14.26738 -13.99845 -13.72200 -13.53341 -12.88581 -12.79809 -12.55101 -12.41667 -12.34156 -12.12867 -11.93314 -11.73995 -11.66010 -11.34723 -11.15747 -10.89341 -10.83477 -10.79323 -10.71286 -10.51002 -10.42970 -10.25238 -10.09940 -9.90167 -9.57728 -8.76531 -8.70230 -8.41576 -7.56293 -6.02290 -4.06974 2.61007 3.30416 3.37136 3.40727 3.52225 4.00997 4.46070 4.79974 4.85189 4.89424 5.08103 5.13911 5.15998 5.31661 5.31904 5.37420 5.46591 5.57380 5.61849 5.65879 5.68984 5.73555 5.79315 5.83404 5.86369 5.93113 5.95620 5.98796 6.05211 6.10157 6.17589 6.21976 6.29391 6.46122 6.49134 6.54148 6.59225 7.01073 7.12623 7.26238 7.50365 7.61690 7.95083 8.27026 8.51248 8.93531 9.18321 9.58406 11.05597 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.005942 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.441784 B = 4711.276483 C = 6376.919282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.116 3.884 5 N -0.598 5.598 6 C 0.246 3.754 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.508 3.492 16 O -0.543 6.543 17 C -0.143 4.143 18 C -0.044 4.044 19 H 0.087 0.913 20 C -0.123 4.123 21 C -0.183 4.183 22 C -0.086 4.086 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 14.698 7.180 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.205 4.205 4 C -0.009 4.009 5 N -0.329 5.329 6 C 0.127 3.873 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.295 3.705 16 O -0.421 6.421 17 C -0.183 4.183 18 C -0.062 4.062 19 H 0.105 0.895 20 C -0.141 4.141 21 C -0.201 4.201 22 C -0.123 4.123 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.080 14.517 6.961 17.587 hybrid contribution 0.113 -1.150 0.521 1.268 sum -6.967 13.367 7.482 16.828 Atomic orbital electron populations 1.21758 0.95098 1.01811 1.01320 1.21561 0.95344 0.96514 1.00222 1.21965 1.01516 0.96028 1.00971 1.21527 0.81917 1.00940 0.96511 1.48188 1.05180 1.28124 1.51361 1.19220 0.94433 0.82655 0.90986 1.21446 1.40929 0.97327 0.96698 0.92579 1.24921 0.95290 0.98696 0.95136 1.69931 1.42123 1.27814 1.13496 0.86533 0.77680 0.82429 0.81002 1.20655 1.21111 1.19947 1.20307 0.87263 0.82284 0.80635 1.90653 1.14556 1.73581 1.63294 1.21979 0.99176 0.97822 0.99296 1.19843 0.95983 0.93913 0.96478 0.89461 1.22265 0.97070 1.00464 0.94264 1.21942 1.03325 0.97760 0.97073 1.20392 1.00861 0.93398 0.97600 1.21528 0.99125 0.97653 0.97350 1.21613 0.98013 0.97186 0.98430 0.92898 0.92887 0.92478 0.90488 0.92757 0.92461 0.93035 0.90408 0.91465 0.95243 0.93887 0.92773 0.89755 0.88781 0.86886 0.88390 0.91513 0.91710 0.92073 0.91757 0.91833 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.12 -1.62 3.11 -90.62 -0.28 -1.90 16 3 C -0.15 -1.86 7.59 37.16 0.28 -1.58 16 4 C 0.12 1.87 4.89 -4.04 -0.02 1.85 16 5 N -0.60 -12.48 2.26 -175.06 -0.40 -12.87 16 6 C 0.25 6.44 5.22 -5.20 -0.03 6.42 16 7 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 11 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.51 10.39 5.98 -10.99 -0.07 10.32 16 16 O -0.54 -13.42 14.09 5.56 0.08 -13.34 16 17 C -0.14 -2.14 3.49 -27.89 -0.10 -2.23 16 18 C -0.04 -0.64 2.10 -92.06 -0.19 -0.83 16 19 H 0.09 1.40 7.86 -51.93 -0.41 0.99 16 20 C -0.12 -1.99 8.44 -35.90 -0.30 -2.30 16 21 C -0.18 -2.56 9.80 -35.90 -0.35 -2.91 16 22 C -0.09 -0.94 6.13 -28.17 -0.17 -1.12 16 23 C -0.12 -1.24 5.98 -26.68 -0.16 -1.40 16 24 C -0.11 -1.28 5.30 -26.68 -0.14 -1.42 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 29 H 0.05 0.59 6.50 -51.93 -0.34 0.25 16 30 H 0.06 0.85 6.87 -51.93 -0.36 0.50 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.33 8.12 -51.92 -0.42 0.91 16 33 H 0.07 0.91 6.09 -51.93 -0.32 0.60 16 34 H 0.03 0.78 7.94 -51.93 -0.41 0.37 16 35 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.08 1.18 7.35 -51.93 -0.38 0.80 16 38 H 0.09 1.19 4.81 -51.93 -0.25 0.94 16 39 H 0.11 2.24 6.72 -52.49 -0.35 1.89 16 40 H 0.10 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.71 8.12 -51.93 -0.42 0.28 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -31.87 355.71 -9.08 -40.95 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.23 Total: 0.83 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.61 Total: -11.90 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.34 Total: -38.90 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.87 -9.08 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778604636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.071 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds