Wall clock time and date at job start Tue Mar 31 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32994 * 119.99978 * 2 1 4 4 C 1.47101 * 119.99961 * 172.86766 * 3 2 1 5 5 O 1.21610 * 119.99934 * 358.62810 * 4 3 2 6 6 N 1.34776 * 119.99920 * 178.62673 * 4 3 2 7 7 C 1.46926 * 120.62942 * 354.22076 * 6 4 3 8 8 C 1.53625 * 108.54198 * 126.36990 * 7 6 4 9 9 C 1.53044 * 109.24138 * 54.85272 * 8 7 6 10 10 C 1.50705 * 109.44852 * 178.49489 * 9 8 7 11 11 H 1.08004 * 119.99424 * 120.06637 * 10 9 8 12 12 C 1.37870 * 120.00045 * 300.06579 * 10 9 8 13 13 N 1.31518 * 120.00467 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99850 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47381 * 59.99609 * 14 12 10 16 16 H 1.48500 * 109.47391 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46924 * 300.00117 * 14 12 10 18 18 C 1.53035 * 109.54226 * 298.51385 * 9 8 7 19 19 C 1.46929 * 120.62929 * 174.50390 * 6 4 3 20 20 C 1.50700 * 119.99671 * 180.27093 * 2 1 3 21 21 C 1.52996 * 109.46878 * 247.03091 * 20 2 1 22 22 C 1.53001 * 109.47468 * 7.03247 * 20 2 1 23 23 C 1.53003 * 109.46729 * 127.03311 * 20 2 1 24 24 H 1.09001 * 109.46634 * 90.00242 * 1 2 3 25 25 H 1.08999 * 109.47477 * 209.99972 * 1 2 3 26 26 H 1.09001 * 109.47147 * 330.00315 * 1 2 3 27 27 H 1.07997 * 119.99606 * 352.87000 * 3 2 1 28 28 H 1.09002 * 109.58791 * 246.20154 * 7 6 4 29 29 H 1.09000 * 109.58591 * 6.63164 * 7 6 4 30 30 H 1.08997 * 109.63377 * 294.86740 * 8 7 6 31 31 H 1.09000 * 109.43288 * 174.72666 * 8 7 6 32 32 H 1.09003 * 109.45533 * 58.53422 * 9 8 7 33 33 H 0.97000 * 119.99914 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.49798 * 301.41608 * 18 9 8 35 35 H 1.08995 * 109.52938 * 181.32846 * 18 9 8 36 36 H 1.09000 * 109.58308 * 353.37452 * 19 6 4 37 37 H 1.08999 * 109.58581 * 113.65496 * 19 6 4 38 38 H 1.09002 * 109.47149 * 96.31419 * 21 20 2 39 39 H 1.09003 * 109.47078 * 216.30513 * 21 20 2 40 40 H 1.08999 * 109.47392 * 336.30478 * 21 20 2 41 41 H 1.09007 * 109.46788 * 59.99757 * 22 20 2 42 42 H 1.08998 * 109.46804 * 179.97438 * 22 20 2 43 43 H 1.09000 * 109.46835 * 300.00283 * 22 20 2 44 44 H 1.09000 * 109.47308 * 30.16146 * 23 20 2 45 45 H 1.08997 * 109.46922 * 150.16368 * 23 20 2 46 46 H 1.08999 * 109.47046 * 270.16127 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6345 1.1567 0.1582 5 8 4.2328 0.1095 0.3139 6 7 4.3114 2.3218 0.1304 7 6 3.6217 3.5809 -0.1822 8 6 3.9099 4.5879 0.9417 9 6 5.4237 4.7277 1.1177 10 6 5.7122 5.7422 2.1942 11 1 6.2650 5.4519 3.0755 12 6 5.2704 7.0406 2.0539 13 7 4.5977 7.3941 0.9805 14 14 5.6273 8.2979 3.3885 15 1 7.0961 8.4351 3.5594 16 1 5.0490 9.6094 3.0006 17 1 5.0202 7.8484 4.6671 18 6 6.0195 3.3761 1.5180 19 6 5.7541 2.3561 0.4062 20 6 2.2605 -1.3051 -0.0062 21 6 3.0029 -1.4716 1.3212 22 6 1.2756 -2.4618 -0.1882 23 6 3.2678 -1.3069 -1.1578 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6382 2.0834 -0.1161 28 1 3.9888 3.9729 -1.1307 29 1 2.5484 3.4029 -0.2488 30 1 3.4665 4.2345 1.8726 31 1 3.4831 5.5560 0.6794 32 1 5.8694 5.0573 0.1792 33 1 4.2866 8.3076 0.8821 34 1 5.5562 3.0340 2.4435 35 1 7.0942 3.4811 1.6663 36 1 6.0882 1.3697 0.7278 37 1 6.2917 2.6478 -0.4960 38 1 2.4053 -2.0827 1.9976 39 1 3.9615 -1.9588 1.1427 40 1 3.1710 -0.4921 1.7689 41 1 0.7467 -2.3431 -1.1340 42 1 1.8207 -3.4057 -0.1932 43 1 0.5579 -2.4604 0.6321 44 1 3.5997 -0.2870 -1.3518 45 1 4.1257 -1.9232 -0.8890 46 1 2.7957 -1.7119 -2.0528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782054462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:24 Heat of formation + Delta-G solvation = -6.484491 kcal Electronic energy + Delta-G solvation = -23209.424038 eV Core-core repulsion = 20100.046123 eV Total energy + Delta-G solvation = -3109.377914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43538 -38.01549 -36.14614 -33.57328 -32.51477 -31.11328 -30.12380 -28.66294 -27.00436 -26.67119 -25.67095 -23.18500 -22.52706 -21.59958 -20.07558 -18.58402 -17.17653 -16.92492 -16.20007 -15.58848 -15.14840 -14.58126 -14.35990 -14.20437 -14.05325 -13.23337 -13.12204 -13.01986 -12.97298 -12.72589 -12.51381 -12.42405 -12.11204 -11.83088 -11.60736 -11.53593 -11.20792 -10.96557 -10.74180 -10.67771 -10.60477 -10.54011 -10.38461 -10.35032 -10.08530 -9.58799 -9.14922 -9.04784 -8.89190 -8.79299 -8.36588 -7.78514 -6.02856 -4.09163 1.57898 3.29575 3.34278 3.37381 3.58813 3.70360 4.40831 4.65682 4.74901 5.06986 5.16227 5.26346 5.35403 5.40774 5.46905 5.53961 5.70883 5.73088 5.77954 5.84156 5.87888 5.96741 6.02607 6.05862 6.13564 6.15336 6.18190 6.29276 6.32471 6.35462 6.49468 6.56787 6.63563 6.69527 6.70151 6.81980 6.95125 7.08112 7.20402 7.31214 7.67192 7.93027 8.02945 8.06865 8.40684 8.70089 8.94033 9.55877 11.02447 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.004033 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741923 B = 6940.770667 C = 7269.091780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.033 4.033 3 C -0.224 4.224 4 C 0.530 3.470 5 O -0.537 6.537 6 N -0.597 5.597 7 C 0.102 3.898 8 C -0.123 4.123 9 C 0.049 3.951 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 C -0.123 4.123 19 C 0.114 3.886 20 C -0.028 4.028 21 C -0.105 4.105 22 C -0.142 4.142 23 C -0.118 4.118 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.102 0.898 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -14.132 -4.018 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.035 4.035 3 C -0.245 4.245 4 C 0.322 3.678 5 O -0.419 6.419 6 N -0.328 5.328 7 C -0.020 4.020 8 C -0.162 4.162 9 C 0.030 3.970 10 C -0.551 4.551 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.161 4.161 19 C -0.008 4.008 20 C -0.028 4.028 21 C -0.162 4.162 22 C -0.200 4.200 23 C -0.174 4.174 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.344 -14.478 -4.019 16.724 hybrid contribution 0.092 1.080 0.708 1.295 sum -7.253 -13.398 -3.311 15.591 Atomic orbital electron populations 1.21044 0.91600 1.03184 1.02558 1.22552 0.95390 0.94535 0.91013 1.22549 0.94134 0.98658 1.09143 1.18357 0.88089 0.83246 0.78087 1.90857 1.71012 1.29851 1.50200 1.48121 1.09528 1.07260 1.67933 1.22169 0.95814 0.84074 0.99981 1.22089 1.00743 0.98604 0.94738 1.18624 0.91325 0.90050 0.96954 1.21180 1.34830 0.94106 1.04963 0.92803 1.24950 0.95088 0.98300 0.95570 1.69831 1.37781 1.18418 1.27075 0.86684 0.78615 0.80585 0.82267 1.20312 1.21304 1.20352 1.22000 1.00417 0.96983 0.96697 1.21639 0.79886 1.00507 0.98765 1.19579 0.94439 0.90940 0.97884 1.21887 0.98584 1.01675 0.94085 1.22075 0.98724 0.98070 1.01095 1.22137 0.97327 1.03394 0.94586 0.90780 0.90718 0.91310 0.85420 0.92140 0.91272 0.94291 0.87946 0.95539 0.92947 0.93067 0.92306 0.90444 0.92500 0.95611 0.92253 0.91667 0.92900 0.92663 0.92659 0.91062 0.92529 0.95522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.20 36.01 0.33 -0.88 16 2 C -0.03 -0.42 4.93 -101.16 -0.50 -0.91 16 3 C -0.22 -3.24 8.41 -37.81 -0.32 -3.56 16 4 C 0.53 9.03 5.74 -12.67 -0.07 8.96 16 5 O -0.54 -9.54 7.84 5.27 0.04 -9.50 16 6 N -0.60 -10.74 2.97 -173.89 -0.52 -11.25 16 7 C 0.10 1.84 6.38 -3.49 -0.02 1.82 16 8 C -0.12 -2.72 5.17 -26.38 -0.14 -2.86 16 9 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 10 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 11 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 13 N -0.89 -24.44 11.31 55.43 0.63 -23.82 16 14 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 19 C 0.11 2.09 6.41 -3.71 -0.02 2.07 16 20 C -0.03 -0.36 0.75 -155.66 -0.12 -0.48 16 21 C -0.11 -1.49 7.58 37.16 0.28 -1.21 16 22 C -0.14 -1.44 7.02 37.16 0.26 -1.18 16 23 C -0.12 -1.63 7.52 37.16 0.28 -1.35 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.63 6.08 -51.93 -0.32 0.31 16 26 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 27 H 0.13 1.70 5.87 -52.49 -0.31 1.40 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.08 5.30 -51.93 -0.28 0.81 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.39 7.04 -51.93 -0.37 1.03 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.32 7.74 -51.93 -0.40 -0.08 16 39 H 0.06 0.88 6.88 -51.93 -0.36 0.52 16 40 H 0.06 1.07 5.58 -51.93 -0.29 0.78 16 41 H 0.05 0.49 7.96 -51.92 -0.41 0.07 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.50 6.70 -51.93 -0.35 0.16 16 44 H 0.07 1.13 4.65 -51.93 -0.24 0.89 16 45 H 0.06 0.81 7.20 -51.93 -0.37 0.44 16 46 H 0.03 0.32 7.82 -51.93 -0.41 -0.08 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -27.57 337.41 -8.29 -35.86 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.75 Total: 1.47 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.75 Total: -13.69 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.11 Total: -35.07 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.04 Total: -9.50 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.57 -8.29 -35.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782054462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.378 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds