Wall clock time and date at job start Tue Mar 31 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32994 * 119.99978 * 2 1 4 4 C 1.47101 * 119.99961 * 172.86766 * 3 2 1 5 5 O 1.21610 * 119.99934 * 358.62810 * 4 3 2 6 6 N 1.34776 * 119.99920 * 178.62673 * 4 3 2 7 7 C 1.46926 * 120.62942 * 354.22076 * 6 4 3 8 8 C 1.53625 * 108.54198 * 126.36990 * 7 6 4 9 9 C 1.53044 * 109.24138 * 54.85272 * 8 7 6 10 10 C 1.50705 * 109.44852 * 178.49489 * 9 8 7 11 11 H 1.08004 * 119.99424 * 120.06637 * 10 9 8 12 12 C 1.37870 * 120.00045 * 300.06579 * 10 9 8 13 13 N 1.31518 * 120.00467 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99850 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47381 * 59.99609 * 14 12 10 16 16 H 1.48500 * 109.47391 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46924 * 300.00117 * 14 12 10 18 18 C 1.53035 * 109.54226 * 298.51385 * 9 8 7 19 19 C 1.46929 * 120.62929 * 174.50390 * 6 4 3 20 20 C 1.50700 * 119.99671 * 180.27093 * 2 1 3 21 21 C 1.52996 * 109.46878 * 247.03091 * 20 2 1 22 22 C 1.53001 * 109.47468 * 7.03247 * 20 2 1 23 23 C 1.53003 * 109.46729 * 127.03311 * 20 2 1 24 24 H 1.09001 * 109.46634 * 90.00242 * 1 2 3 25 25 H 1.08999 * 109.47477 * 209.99972 * 1 2 3 26 26 H 1.09001 * 109.47147 * 330.00315 * 1 2 3 27 27 H 1.07997 * 119.99606 * 352.87000 * 3 2 1 28 28 H 1.09002 * 109.58791 * 246.20154 * 7 6 4 29 29 H 1.09000 * 109.58591 * 6.63164 * 7 6 4 30 30 H 1.08997 * 109.63377 * 294.86740 * 8 7 6 31 31 H 1.09000 * 109.43288 * 174.72666 * 8 7 6 32 32 H 1.09003 * 109.45533 * 58.53422 * 9 8 7 33 33 H 0.97000 * 119.99914 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.49798 * 301.41608 * 18 9 8 35 35 H 1.08995 * 109.52938 * 181.32846 * 18 9 8 36 36 H 1.09000 * 109.58308 * 353.37452 * 19 6 4 37 37 H 1.08999 * 109.58581 * 113.65496 * 19 6 4 38 38 H 1.09002 * 109.47149 * 96.31419 * 21 20 2 39 39 H 1.09003 * 109.47078 * 216.30513 * 21 20 2 40 40 H 1.08999 * 109.47392 * 336.30478 * 21 20 2 41 41 H 1.09007 * 109.46788 * 59.99757 * 22 20 2 42 42 H 1.08998 * 109.46804 * 179.97438 * 22 20 2 43 43 H 1.09000 * 109.46835 * 300.00283 * 22 20 2 44 44 H 1.09000 * 109.47308 * 30.16146 * 23 20 2 45 45 H 1.08997 * 109.46922 * 150.16368 * 23 20 2 46 46 H 1.08999 * 109.47046 * 270.16127 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6345 1.1567 0.1582 5 8 4.2328 0.1095 0.3139 6 7 4.3114 2.3218 0.1304 7 6 3.6217 3.5809 -0.1822 8 6 3.9099 4.5879 0.9417 9 6 5.4237 4.7277 1.1177 10 6 5.7122 5.7422 2.1942 11 1 6.2650 5.4519 3.0755 12 6 5.2704 7.0406 2.0539 13 7 4.5977 7.3941 0.9805 14 14 5.6273 8.2979 3.3885 15 1 7.0961 8.4351 3.5594 16 1 5.0490 9.6094 3.0006 17 1 5.0202 7.8484 4.6671 18 6 6.0195 3.3761 1.5180 19 6 5.7541 2.3561 0.4062 20 6 2.2605 -1.3051 -0.0062 21 6 3.0029 -1.4716 1.3212 22 6 1.2756 -2.4618 -0.1882 23 6 3.2678 -1.3069 -1.1578 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6382 2.0834 -0.1161 28 1 3.9888 3.9729 -1.1307 29 1 2.5484 3.4029 -0.2488 30 1 3.4665 4.2345 1.8726 31 1 3.4831 5.5560 0.6794 32 1 5.8694 5.0573 0.1792 33 1 4.2866 8.3076 0.8821 34 1 5.5562 3.0340 2.4435 35 1 7.0942 3.4811 1.6663 36 1 6.0882 1.3697 0.7278 37 1 6.2917 2.6478 -0.4960 38 1 2.4053 -2.0827 1.9976 39 1 3.9615 -1.9588 1.1427 40 1 3.1710 -0.4921 1.7689 41 1 0.7467 -2.3431 -1.1340 42 1 1.8207 -3.4057 -0.1932 43 1 0.5579 -2.4604 0.6321 44 1 3.5997 -0.2870 -1.3518 45 1 4.1257 -1.9232 -0.8890 46 1 2.7957 -1.7119 -2.0528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782054462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:24 Heat of formation + Delta-G solvation = -19.477487 kcal Electronic energy + Delta-G solvation = -23209.987456 eV Core-core repulsion = 20100.046123 eV Total energy + Delta-G solvation = -3109.941333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.69082 -39.39577 -37.49631 -35.31140 -33.75241 -32.69843 -31.73606 -29.66412 -28.19662 -28.08914 -26.95410 -24.76456 -24.08111 -22.86512 -21.54375 -20.10147 -18.70695 -18.09629 -17.99619 -16.87746 -16.51776 -16.41892 -15.46723 -15.38693 -15.14772 -14.80546 -14.63831 -14.51608 -14.26457 -14.13824 -13.63440 -13.43594 -13.37461 -13.18885 -12.91248 -12.81693 -12.65844 -12.53219 -12.44620 -12.13929 -11.93940 -11.89776 -11.73271 -11.57928 -11.45040 -11.33381 -10.97968 -10.82173 -10.42622 -10.18697 -9.93466 -9.25811 -8.07533 -6.21457 0.48788 1.42509 1.42751 1.50437 2.23420 2.41512 2.45124 3.18427 3.65344 3.70697 3.95297 4.21316 4.24031 4.26735 4.38221 4.46120 4.48922 4.51790 4.59842 4.65248 4.76615 4.78045 4.87106 4.89349 4.91956 4.95370 4.97344 5.00650 5.15866 5.20430 5.23731 5.25814 5.26933 5.30089 5.44199 5.50859 5.57240 5.59724 5.63171 5.68539 5.85969 5.98806 6.14358 6.39197 6.67441 6.87818 7.36898 7.46202 8.95450 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.004033 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741923 B = 6940.770667 C = 7269.091780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.013 4.013 3 C -0.252 4.252 4 C 0.526 3.474 5 O -0.549 6.549 6 N -0.606 5.606 7 C 0.115 3.885 8 C -0.113 4.113 9 C 0.046 3.954 10 C -0.538 4.538 11 H 0.046 0.954 12 C 0.019 3.981 13 N -0.912 5.912 14 Si 0.949 3.051 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.275 1.275 18 C -0.112 4.112 19 C 0.122 3.878 20 C -0.035 4.035 21 C -0.100 4.100 22 C -0.138 4.138 23 C -0.113 4.113 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.138 0.862 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.026 0.974 31 H 0.077 0.923 32 H 0.001 0.999 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.479 -15.422 -4.205 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.015 4.015 3 C -0.272 4.272 4 C 0.320 3.680 5 O -0.431 6.431 6 N -0.338 5.338 7 C -0.008 4.008 8 C -0.151 4.151 9 C 0.027 3.973 10 C -0.576 4.576 11 H 0.064 0.936 12 C -0.180 4.180 13 N -0.551 5.551 14 Si 0.775 3.225 15 H -0.200 1.200 16 H -0.207 1.207 17 H -0.200 1.200 18 C -0.150 4.150 19 C -0.001 4.001 20 C -0.035 4.035 21 C -0.157 4.157 22 C -0.195 4.195 23 C -0.170 4.170 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.156 0.844 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.045 0.955 31 H 0.096 0.904 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.233 -15.785 -4.208 18.765 hybrid contribution 0.696 1.398 0.773 1.743 sum -8.537 -14.387 -3.435 17.078 Atomic orbital electron populations 1.21151 0.88759 1.04343 1.04091 1.22932 0.97274 0.93645 0.87638 1.22503 0.92443 1.00003 1.12283 1.18833 0.89271 0.82560 0.77337 1.90856 1.71610 1.30059 1.50574 1.48139 1.09230 1.07606 1.68834 1.21984 0.97585 0.83161 0.98023 1.21845 0.99065 0.98581 0.95649 1.18595 0.92648 0.91047 0.94965 1.21528 1.35149 0.95376 1.05517 0.93552 1.25633 0.94945 0.99949 0.97523 1.69948 1.38130 1.18730 1.28283 0.85758 0.78461 0.78449 0.79832 1.19989 1.20702 1.20024 1.21838 1.00187 0.95984 0.97029 1.21477 0.80810 0.99737 0.98039 1.19665 0.94871 0.92474 0.96497 1.21791 0.98554 1.00182 0.95191 1.22038 0.98274 0.96686 1.02476 1.22050 0.97438 1.01764 0.95792 0.88811 0.89056 0.90708 0.84411 0.92174 0.88427 0.95517 0.90432 0.98106 0.92897 0.94145 0.92081 0.90048 0.91946 0.93837 0.93675 0.94357 0.91460 0.92361 0.91208 0.93308 0.93766 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.20 71.24 0.66 -1.25 16 2 C -0.01 -0.29 4.93 -17.61 -0.09 -0.38 16 3 C -0.25 -6.89 8.41 23.43 0.20 -6.69 16 4 C 0.53 17.74 5.74 86.57 0.50 18.24 16 5 O -0.55 -19.51 7.84 -4.06 -0.03 -19.54 16 6 N -0.61 -21.81 2.97 -822.33 -2.44 -24.25 16 7 C 0.11 4.14 6.38 86.51 0.55 4.69 16 8 C -0.11 -5.09 5.17 30.82 0.16 -4.93 16 9 C 0.05 2.26 2.06 -11.51 -0.02 2.24 16 10 C -0.54 -29.46 8.56 25.60 0.22 -29.24 16 11 H 0.05 2.54 7.74 -2.91 -0.02 2.51 16 12 C 0.02 1.01 5.30 84.65 0.45 1.46 16 13 N -0.91 -50.77 11.31 21.45 0.24 -50.53 16 14 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 C -0.11 -4.74 5.30 30.67 0.16 -4.57 16 19 C 0.12 4.53 6.41 86.36 0.55 5.08 16 20 C -0.04 -0.82 0.75 -52.93 -0.04 -0.86 16 21 C -0.10 -2.72 7.58 71.98 0.55 -2.18 16 22 C -0.14 -2.27 7.02 71.98 0.51 -1.77 16 23 C -0.11 -3.00 7.52 71.98 0.54 -2.45 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.10 6.08 -2.39 -0.01 1.09 16 26 H 0.07 1.08 8.07 -2.39 -0.02 1.06 16 27 H 0.14 3.40 5.87 -2.91 -0.02 3.39 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.10 2.95 5.30 -2.39 -0.01 2.94 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 3.91 6.03 -2.39 -0.01 3.89 16 32 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.08 2.95 7.04 -2.39 -0.02 2.93 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.04 1.00 7.74 -2.39 -0.02 0.98 16 39 H 0.04 1.33 6.88 -2.39 -0.02 1.31 16 40 H 0.04 1.24 5.58 -2.39 -0.01 1.23 16 41 H 0.07 0.94 7.96 -2.38 -0.02 0.92 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.97 6.70 -2.39 -0.02 0.95 16 44 H 0.05 1.51 4.65 -2.39 -0.01 1.50 16 45 H 0.04 1.25 7.20 -2.39 -0.02 1.23 16 46 H 0.04 0.98 7.82 -2.39 -0.02 0.96 16 Total: -1.00 -60.43 337.41 5.63 -54.80 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.95 Total: 17.01 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 4.89 Total: -22.62 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -2.20 Total: -74.78 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.03 Total: -19.54 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -60.43 5.63 -54.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782054462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.321 kcal (2) G-P(sol) polarization free energy of solvation -60.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds