Wall clock time and date at job start Tue Mar 31 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32994 * 119.99716 * 2 1 4 4 C 1.47095 * 120.00277 * 352.08941 * 3 2 1 5 5 O 1.21618 * 120.00009 * 353.28473 * 4 3 2 6 6 N 1.34776 * 120.00052 * 173.28396 * 4 3 2 7 7 C 1.46923 * 120.63065 * 354.39886 * 6 4 3 8 8 C 1.53195 * 108.89342 * 233.51090 * 7 6 4 9 9 C 1.53069 * 109.29932 * 305.58328 * 8 7 6 10 10 C 1.50702 * 109.45368 * 181.24167 * 9 8 7 11 11 H 1.08001 * 119.99741 * 239.78605 * 10 9 8 12 12 C 1.37870 * 119.99914 * 59.78384 * 10 9 8 13 13 N 1.31512 * 120.00308 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99648 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47258 * 60.00585 * 14 12 10 16 16 H 1.48506 * 109.47113 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47080 * 300.00022 * 14 12 10 18 18 C 1.53041 * 109.66077 * 61.14754 * 9 8 7 19 19 C 1.46934 * 120.62932 * 174.37829 * 6 4 3 20 20 C 1.50700 * 120.00108 * 180.02562 * 2 1 3 21 21 C 1.53000 * 109.47218 * 180.02562 * 20 2 1 22 22 C 1.53002 * 109.46815 * 299.99656 * 20 2 1 23 23 C 1.52990 * 109.47448 * 59.99780 * 20 2 1 24 24 H 1.09003 * 109.46719 * 83.67717 * 1 2 3 25 25 H 1.08997 * 109.46899 * 203.66994 * 1 2 3 26 26 H 1.08995 * 109.47231 * 323.67190 * 1 2 3 27 27 H 1.08000 * 119.99913 * 172.08491 * 3 2 1 28 28 H 1.08996 * 109.58981 * 353.37337 * 7 6 4 29 29 H 1.08998 * 109.58659 * 113.65869 * 7 6 4 30 30 H 1.09005 * 109.49227 * 65.39243 * 8 7 6 31 31 H 1.09003 * 109.49688 * 185.48013 * 8 7 6 32 32 H 1.09000 * 109.34325 * 301.12272 * 9 8 7 33 33 H 0.97001 * 120.00163 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.49735 * 178.75107 * 18 9 8 35 35 H 1.09005 * 109.51802 * 58.66821 * 18 9 8 36 36 H 1.09004 * 109.58249 * 246.20041 * 19 6 4 37 37 H 1.08996 * 109.58575 * 6.48089 * 19 6 4 38 38 H 1.09000 * 109.47691 * 59.99074 * 21 20 2 39 39 H 1.08994 * 109.47400 * 180.02562 * 21 20 2 40 40 H 1.09012 * 109.46508 * 299.99531 * 21 20 2 41 41 H 1.09001 * 109.47302 * 59.99999 * 22 20 2 42 42 H 1.09003 * 109.47166 * 180.02562 * 22 20 2 43 43 H 1.09006 * 109.47103 * 300.00293 * 22 20 2 44 44 H 1.08998 * 109.47333 * 60.00069 * 23 20 2 45 45 H 1.09003 * 109.47198 * 180.02562 * 23 20 2 46 46 H 1.09006 * 109.47428 * 300.00309 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4470 2.4196 -0.1753 5 8 0.2604 2.4098 -0.4418 6 7 2.0977 3.5922 -0.0407 7 6 3.4988 3.6244 0.4003 8 6 3.6182 4.5628 1.6053 9 6 3.0395 5.9319 1.2397 10 6 3.1828 6.8669 2.4128 11 1 2.3058 7.3125 2.8585 12 6 4.4336 7.1535 2.9171 13 7 5.5016 6.6112 2.3741 14 14 4.6112 8.3131 4.3709 15 1 3.8721 7.7635 5.5357 16 1 6.0481 8.4551 4.7181 17 1 4.0549 9.6429 4.0142 18 6 1.5587 5.7861 0.8818 19 6 1.4194 4.8625 -0.3325 20 6 2.2606 -1.3051 -0.0006 21 6 3.7648 -1.0255 0.0002 22 6 1.8910 -2.1079 1.2484 23 6 1.8910 -2.1069 -1.2500 24 1 -0.3633 0.1132 -1.0215 25 1 -0.3633 -0.9412 0.4126 26 1 -0.3633 0.8279 0.6088 27 1 3.2442 1.1563 0.1288 28 1 3.8153 2.6212 0.6855 29 1 4.1288 3.9895 -0.4108 30 1 3.0622 4.1477 2.4460 31 1 4.6675 4.6703 1.8801 32 1 3.5816 6.3364 0.3849 33 1 6.3816 6.8132 2.7287 34 1 1.1439 6.7655 0.6434 35 1 1.0199 5.3588 1.7276 36 1 1.8796 5.3309 -1.2025 37 1 0.3645 4.6758 -0.5331 38 1 4.0279 -0.4544 0.8905 39 1 4.3098 -1.9694 -0.0007 40 1 4.0284 -0.4534 -0.8895 41 1 0.8193 -2.3070 1.2484 42 1 2.4363 -3.0517 1.2482 43 1 2.1543 -1.5366 2.1386 44 1 2.1543 -1.5350 -2.1398 45 1 2.4357 -3.0510 -1.2502 46 1 0.8193 -2.3061 -1.2502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782054467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:27 Heat of formation + Delta-G solvation = -55.042187 kcal Electronic energy + Delta-G solvation = -22745.887789 eV Core-core repulsion = 19634.404255 eV Total energy + Delta-G solvation = -3111.483534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26452 -39.31111 -38.16861 -35.32982 -33.48456 -32.89525 -31.67053 -29.77895 -28.17655 -28.08812 -26.98102 -24.96401 -24.13700 -23.18337 -21.38000 -19.86776 -18.68595 -18.24869 -18.06193 -16.61709 -16.38248 -16.20933 -16.09490 -15.15630 -15.10439 -14.87007 -14.75171 -14.57348 -14.22938 -14.20042 -13.73820 -13.45309 -13.30652 -13.09539 -12.91775 -12.88973 -12.79341 -12.58400 -12.50256 -12.42996 -12.14840 -12.02083 -11.87419 -11.85388 -11.50240 -11.42904 -11.00937 -10.85900 -10.48614 -10.36376 -10.11250 -9.41606 -8.07951 -6.21544 0.43995 1.42684 1.42856 1.50555 2.16719 2.33666 2.44222 3.18226 3.50088 3.77982 3.94562 4.08335 4.09658 4.21801 4.28523 4.38345 4.42312 4.49324 4.57790 4.65108 4.73662 4.78627 4.79857 4.84469 4.86556 4.92857 4.97483 5.03412 5.06148 5.08354 5.17114 5.19218 5.23976 5.26978 5.34613 5.42860 5.46133 5.52524 5.64131 5.65842 5.72802 5.97759 6.12106 6.38675 6.59126 6.87296 7.26259 7.46033 8.95330 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.003988 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.660004 B = 7019.946516 C = 7586.656862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.012 4.012 3 C -0.250 4.250 4 C 0.536 3.464 5 O -0.584 6.584 6 N -0.604 5.604 7 C 0.116 3.884 8 C -0.113 4.113 9 C 0.046 3.954 10 C -0.538 4.538 11 H 0.046 0.954 12 C 0.019 3.981 13 N -0.911 5.911 14 Si 0.949 3.051 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.274 1.274 18 C -0.112 4.112 19 C 0.118 3.882 20 C -0.039 4.039 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.135 4.135 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.147 0.853 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.081 0.919 32 H 0.004 0.996 33 H 0.262 0.738 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -17.980 -5.507 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.014 4.014 3 C -0.270 4.270 4 C 0.329 3.671 5 O -0.468 6.468 6 N -0.336 5.336 7 C -0.006 4.006 8 C -0.152 4.152 9 C 0.027 3.973 10 C -0.576 4.576 11 H 0.064 0.936 12 C -0.180 4.180 13 N -0.550 5.550 14 Si 0.775 3.225 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.200 1.200 18 C -0.151 4.151 19 C -0.005 4.005 20 C -0.039 4.039 21 C -0.206 4.206 22 C -0.196 4.196 23 C -0.192 4.192 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.800 -17.951 -5.628 19.193 hybrid contribution 0.289 1.336 0.914 1.644 sum -3.511 -16.615 -4.714 17.625 Atomic orbital electron populations 1.20994 0.91453 1.02081 1.02590 1.22770 0.96385 0.94352 0.87872 1.22667 1.01484 0.90928 1.11930 1.19102 0.86366 0.85026 0.76574 1.90673 1.16365 1.87922 1.51797 1.48158 1.13748 1.05914 1.65750 1.21904 0.80417 1.01117 0.97205 1.21788 1.02922 0.95442 0.95046 1.18604 0.90809 0.92961 0.94886 1.21517 0.92474 1.27479 1.16139 0.93564 1.25625 0.95707 0.97416 0.99243 1.69936 0.98244 1.44535 1.42317 0.85757 0.77004 0.79650 0.80083 1.20093 1.20647 1.19968 1.21837 0.98741 0.98135 0.96345 1.21552 0.97902 0.83559 0.97493 1.19797 0.95033 0.91230 0.97847 1.22024 0.93806 1.02744 1.02059 1.21890 1.02299 0.99964 0.95473 1.21820 1.02267 0.99817 0.95265 0.91175 0.90381 0.92322 0.83591 0.88600 0.91691 0.95766 0.90066 0.97811 0.92857 0.91819 0.94302 0.91324 0.90188 0.92584 0.90407 0.92383 0.91783 0.90299 0.93155 0.93037 0.90224 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 7.77 71.24 0.55 -2.34 16 2 C -0.01 -0.28 4.90 -17.61 -0.09 -0.37 16 3 C -0.25 -7.10 8.15 23.43 0.19 -6.91 16 4 C 0.54 19.30 7.47 86.57 0.65 19.94 16 5 O -0.58 -23.40 12.74 -4.09 -0.05 -23.45 16 6 N -0.60 -22.48 2.97 -823.18 -2.45 -24.92 16 7 C 0.12 4.20 6.30 86.36 0.54 4.75 16 8 C -0.11 -5.16 5.16 30.68 0.16 -5.00 16 9 C 0.05 2.27 2.06 -11.50 -0.02 2.24 16 10 C -0.54 -29.54 8.56 25.60 0.22 -29.33 16 11 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 12 C 0.02 1.04 5.30 84.65 0.45 1.49 16 13 N -0.91 -50.59 11.30 21.44 0.24 -50.35 16 14 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 C -0.11 -4.81 5.30 30.67 0.16 -4.65 16 19 C 0.12 4.46 6.44 86.36 0.56 5.01 16 20 C -0.04 -0.67 0.87 -52.93 -0.05 -0.72 16 21 C -0.15 -2.42 7.14 71.98 0.51 -1.91 16 22 C -0.14 -2.05 8.30 71.98 0.60 -1.45 16 23 C -0.13 -1.92 8.32 71.98 0.60 -1.32 16 24 H 0.07 1.85 7.98 -2.39 -0.02 1.83 16 25 H 0.08 1.50 6.65 -2.39 -0.02 1.49 16 26 H 0.06 1.84 6.28 -2.39 -0.01 1.83 16 27 H 0.15 3.68 3.84 -2.91 -0.01 3.67 16 28 H 0.10 2.94 5.46 -2.39 -0.01 2.93 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.08 4.09 6.03 -2.39 -0.01 4.08 16 32 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 37 H 0.08 3.01 6.99 -2.39 -0.02 2.99 16 38 H 0.06 0.99 7.38 -2.39 -0.02 0.97 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.99 7.62 -2.38 -0.02 0.97 16 41 H 0.06 0.89 6.81 -2.39 -0.02 0.87 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 0.85 7.76 -2.38 -0.02 0.84 16 Total: -1.00 -62.10 348.35 5.74 -56.36 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.94 Total: 17.78 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.03 Total: -20.56 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -2.21 Total: -75.27 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.45 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -62.10 5.74 -56.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782054467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.315 kcal (2) G-P(sol) polarization free energy of solvation -62.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds