Wall clock time and date at job start Tue Mar 31 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47309 * 2 1 4 4 C 1.53001 * 109.46615 * 240.00215 * 2 1 3 5 5 C 1.50700 * 109.47336 * 60.00331 * 4 2 1 6 6 H 1.07996 * 119.99933 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99786 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00298 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99652 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47076 * 60.00362 * 9 7 5 11 11 H 1.48499 * 109.46956 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47169 * 300.00034 * 9 7 5 13 13 C 1.52999 * 109.46875 * 120.00506 * 2 1 3 14 14 N 1.46496 * 109.47003 * 299.99350 * 13 2 1 15 15 C 1.34781 * 120.00046 * 180.02562 * 14 13 2 16 16 O 1.21618 * 119.99745 * 0.27951 * 15 14 13 17 17 C 1.47100 * 120.00043 * 180.02562 * 15 14 13 18 18 C 1.32995 * 119.99717 * 187.26177 * 17 15 14 19 19 C 1.51263 * 120.85124 * 12.17420 * 18 17 15 20 20 C 1.53663 * 108.31214 * 128.61897 * 19 18 17 21 21 C 1.52961 * 109.32390 * 54.85853 * 20 19 18 22 22 C 1.52955 * 109.81820 * 296.27331 * 21 20 19 23 23 C 1.51268 * 120.84610 * 192.45331 * 18 17 15 24 24 H 1.08998 * 109.46954 * 299.99972 * 1 2 3 25 25 H 1.08999 * 109.47109 * 59.99609 * 1 2 3 26 26 H 1.09000 * 109.47407 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46936 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47355 * 300.00241 * 3 2 1 29 29 H 1.08998 * 109.47090 * 60.00111 * 3 2 1 30 30 H 1.09005 * 109.47136 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47336 * 299.99653 * 4 2 1 32 32 H 0.97005 * 120.00111 * 179.97438 * 8 7 5 33 33 H 1.09011 * 109.46689 * 179.97438 * 13 2 1 34 34 H 1.09002 * 109.47660 * 59.99989 * 13 2 1 35 35 H 0.96999 * 120.00296 * 0.02562 * 14 13 2 36 36 H 1.07996 * 119.99929 * 7.26477 * 17 15 14 37 37 H 1.09003 * 109.62484 * 248.38983 * 19 18 17 38 38 H 1.09000 * 109.63018 * 8.95924 * 19 18 17 39 39 H 1.09007 * 109.62271 * 294.83862 * 20 19 18 40 40 H 1.09000 * 109.42898 * 174.75956 * 20 19 18 41 41 H 1.09005 * 109.41008 * 176.16850 * 21 20 19 42 42 H 1.08996 * 109.41010 * 56.38316 * 21 20 19 43 43 H 1.09002 * 109.48155 * 303.62301 * 22 21 20 44 44 H 1.08990 * 109.48638 * 183.57911 * 22 21 20 45 45 H 1.08996 * 109.62732 * 351.03712 * 23 18 17 46 46 H 1.09004 * 109.62418 * 111.61315 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 2.6279 -1.5503 -3.8527 9 14 1.2478 0.3988 -5.2572 10 1 1.7419 1.7991 -5.2571 11 1 1.7428 -0.3012 -6.4697 12 1 -0.2372 0.3978 -5.2572 13 6 2.0399 -0.7214 1.2492 14 7 1.5517 -0.0308 2.4453 15 6 1.8777 -0.4910 3.6695 16 8 2.5813 -1.4767 3.7810 17 6 1.3870 0.2021 4.8706 18 6 1.8231 -0.1618 6.0731 19 6 3.0122 -1.0851 6.2203 20 6 4.0094 -0.4368 7.1931 21 6 3.2969 -0.1132 8.5074 22 6 2.2006 0.9247 8.2611 23 6 1.1389 0.3321 7.3285 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7217 -1.2492 31 1 1.6766 -1.7489 -1.2493 32 1 2.8621 -1.8817 -4.7338 33 1 3.1300 -0.7217 1.2489 34 1 1.6766 -1.7491 1.2492 35 1 0.9938 0.7577 2.3564 36 1 0.6725 1.0064 4.7758 37 1 2.6827 -2.0461 6.6156 38 1 3.4866 -1.2288 5.2496 39 1 4.4021 0.4817 6.7567 40 1 4.8301 -1.1279 7.3851 41 1 4.0178 0.2839 9.2221 42 1 2.8512 -1.0222 8.9111 43 1 2.6361 1.8108 7.7994 44 1 1.7393 1.1983 9.2098 45 1 0.4093 1.0995 7.0701 46 1 0.6392 -0.4999 7.8247 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807722900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:06 Heat of formation + Delta-G solvation = -56.824293 kcal Electronic energy + Delta-G solvation = -21911.492101 eV Core-core repulsion = 18799.931289 eV Total energy + Delta-G solvation = -3111.560812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91498 -38.25407 -36.95623 -33.58124 -32.78854 -32.04063 -31.12365 -27.72969 -26.95335 -26.49794 -25.62389 -23.15754 -22.96550 -21.50929 -20.30269 -19.01921 -17.86800 -16.69577 -16.34492 -15.74241 -15.22464 -14.88064 -14.58216 -14.45383 -14.21027 -13.82078 -13.63515 -13.24457 -13.06115 -12.78175 -12.75605 -12.42617 -12.13825 -12.05964 -11.97367 -11.30336 -11.13850 -11.09671 -10.99618 -10.87803 -10.82040 -10.61812 -10.48450 -10.38692 -10.25591 -9.85994 -9.38236 -9.19175 -8.97563 -8.88978 -8.56911 -8.35025 -5.99159 -4.00537 1.37212 3.32378 3.37769 3.38801 3.46469 3.56836 4.45500 4.50630 4.53841 4.68538 4.84067 4.97226 5.14121 5.20544 5.27997 5.36186 5.38779 5.43052 5.53035 5.63818 5.64832 5.72673 5.76893 5.80346 5.85408 5.89107 6.11221 6.18470 6.19099 6.25820 6.30484 6.41505 6.45113 6.56409 6.64174 6.69629 6.86502 7.07846 7.08632 7.14859 7.64802 7.77480 7.84968 7.99605 8.41229 8.53770 9.04085 9.62466 11.12285 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.045105 B = 0.002867 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.622122 B = 9762.480153 C =10020.131598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.717 5.717 15 C 0.540 3.460 16 O -0.545 6.545 17 C -0.228 4.228 18 C -0.027 4.027 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.093 4.093 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.398 0.602 36 H 0.123 0.877 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 5.662 22.691 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.367 5.367 15 C 0.330 3.670 16 O -0.427 6.427 17 C -0.249 4.249 18 C -0.029 4.029 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.130 4.130 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.141 0.859 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.781 4.850 22.591 23.175 hybrid contribution -0.693 0.873 -1.011 1.505 sum -2.474 5.723 21.580 22.463 Atomic orbital electron populations 1.21759 0.95309 1.01148 1.00205 1.20900 0.95449 0.95846 0.95113 1.21757 1.00523 0.95919 1.00204 1.19085 0.96341 0.95211 0.89482 1.21148 1.31201 1.12089 0.90546 0.92323 1.25014 0.95319 0.95088 0.99071 1.69956 1.36881 1.23045 1.23539 0.86709 0.79138 0.79763 0.82676 1.20331 1.21396 1.20338 1.21613 0.98863 0.96015 0.83009 1.46145 1.53016 1.31655 1.05883 1.18558 0.80216 0.84440 0.83808 1.90601 1.38485 1.27311 1.86254 1.22372 1.06272 1.03853 0.92427 1.22661 0.93360 0.93211 0.93635 1.21683 0.93707 0.96738 1.03649 1.21680 0.97930 1.00839 0.95025 1.21566 0.97726 0.99110 0.97675 1.21569 0.96217 0.98626 0.99022 1.20959 0.97365 1.00900 0.93741 0.95235 0.91470 0.93387 0.93393 0.91469 0.95238 0.96359 0.96364 0.92982 0.91852 0.91860 0.76679 0.85863 0.90802 0.85892 0.92061 0.91635 0.92094 0.91918 0.91734 0.91697 0.90893 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.63 7.65 -34.44 -0.26 -13.89 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.13 2.30 4.56 -4.04 -0.02 2.28 16 14 N -0.72 -10.69 4.95 -61.49 -0.30 -11.00 16 15 C 0.54 8.28 7.62 -12.66 -0.10 8.18 16 16 O -0.55 -10.03 13.22 5.26 0.07 -9.96 16 17 C -0.23 -2.70 9.65 -37.81 -0.37 -3.06 16 18 C -0.03 -0.29 5.38 -100.61 -0.54 -0.83 16 19 C -0.12 -1.43 5.32 -27.26 -0.14 -1.57 16 20 C -0.12 -1.11 5.95 -26.41 -0.16 -1.26 16 21 C -0.12 -0.94 5.81 -26.77 -0.16 -1.09 16 22 C -0.12 -0.84 5.94 -26.63 -0.16 -1.00 16 23 C -0.09 -0.74 6.04 -27.48 -0.17 -0.90 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 25 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 29 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.40 5.06 6.15 -40.82 -0.25 4.81 16 36 H 0.12 1.15 7.96 -52.49 -0.42 0.73 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.12 1.83 4.79 -52.86 -0.25 1.58 16 39 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -30.15 354.12 -9.03 -39.18 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.08 Total: 2.28 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -1.76 Total: -16.27 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.43 Total: -36.79 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.15 -9.03 -39.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807722900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.649 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds