Wall clock time and date at job start Tue Mar 31 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47099 * 120.00594 * 2 1 4 4 O 1.21614 * 120.00002 * 230.96454 * 3 2 1 5 5 N 1.34782 * 119.99387 * 50.95985 * 3 2 1 6 6 C 1.46490 * 120.00565 * 5.70706 * 5 3 2 7 7 C 1.50696 * 109.47142 * 261.61214 * 6 5 3 8 8 H 1.07992 * 120.00375 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99802 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99934 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00240 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46878 * 89.99548 * 11 9 7 13 13 H 1.48502 * 109.47104 * 209.99533 * 11 9 7 14 14 H 1.48502 * 109.46907 * 329.99631 * 11 9 7 15 15 C 1.46503 * 119.99274 * 185.43063 * 5 3 2 16 16 C 1.53001 * 109.46993 * 270.27685 * 15 5 3 17 17 C 1.52999 * 109.47243 * 180.02562 * 16 15 5 18 18 C 1.53000 * 109.47160 * 174.99611 * 17 16 15 19 19 C 1.52991 * 109.47333 * 295.00284 * 17 16 15 20 20 C 1.33001 * 119.99441 * 180.02562 * 2 1 3 21 21 C 1.51405 * 136.31458 * 179.63238 * 20 2 1 22 22 C 1.53376 * 87.51781 * 206.05274 * 21 20 2 23 23 C 1.51398 * 136.31860 * 359.97438 * 20 2 1 24 24 H 1.09003 * 109.46920 * 81.02422 * 1 2 3 25 25 H 1.09000 * 109.47425 * 201.02961 * 1 2 3 26 26 H 1.09002 * 109.46498 * 321.03086 * 1 2 3 27 27 H 1.09007 * 109.46693 * 21.61024 * 6 5 3 28 28 H 1.08998 * 109.47414 * 141.60673 * 6 5 3 29 29 H 0.96996 * 120.00324 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.47642 * 30.27332 * 15 5 3 31 31 H 1.08996 * 109.46760 * 150.28276 * 15 5 3 32 32 H 1.09007 * 109.47177 * 300.00206 * 16 15 5 33 33 H 1.09007 * 109.47543 * 60.00370 * 16 15 5 34 34 H 1.09003 * 109.46795 * 55.00336 * 17 16 15 35 35 H 1.09003 * 109.46675 * 60.00651 * 18 17 16 36 36 H 1.09001 * 109.47050 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47649 * 300.00299 * 18 17 16 38 38 H 1.08995 * 109.47529 * 59.99571 * 19 17 16 39 39 H 1.09001 * 109.47277 * 179.97438 * 19 17 16 40 40 H 1.09003 * 109.47222 * 299.99790 * 19 17 16 41 41 H 1.09002 * 113.55800 * 320.63514 * 21 20 2 42 42 H 1.08998 * 113.55733 * 91.36862 * 21 20 2 43 43 H 1.08990 * 113.96839 * 220.28933 * 22 21 20 44 44 H 1.09000 * 113.59682 * 88.79222 * 22 21 20 45 45 H 1.09004 * 113.56256 * 268.63408 * 23 20 2 46 46 H 1.09004 * 113.56355 * 39.36065 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2427 1.2738 0.0000 4 8 3.1212 1.4687 -0.8181 5 7 1.9429 2.2250 0.9067 6 6 0.9739 1.9450 1.9690 7 6 -0.3718 2.5012 1.5809 8 1 -0.4932 3.0118 0.6370 9 6 -1.4483 2.3573 2.4303 10 7 -2.6228 2.8423 2.0914 11 14 -1.2385 1.4736 4.0626 12 1 -0.8590 2.4543 5.1112 13 1 -2.5165 0.8172 4.4380 14 1 -0.1730 0.4468 3.9362 15 6 2.5908 3.5369 0.8332 16 6 3.8821 3.5147 1.6535 17 6 4.5584 4.8849 1.5774 18 6 5.7817 4.9017 2.4962 19 6 4.9982 5.1573 0.1376 20 6 2.1719 -1.1519 -0.0005 21 6 3.6250 -1.5774 -0.0074 22 6 3.1706 -2.8817 -0.6743 23 6 1.8137 -2.6229 -0.0007 24 1 -0.3633 0.1603 -1.0151 25 1 -0.3634 -0.9592 0.3688 26 1 -0.3632 0.7990 0.6463 27 1 0.8939 0.8675 2.1130 28 1 1.3063 2.4118 2.8963 29 1 -3.3800 2.7414 2.6891 30 1 2.8244 3.7692 -0.2058 31 1 1.9193 4.2966 1.2333 32 1 3.6485 3.2824 2.6926 33 1 4.5537 2.7549 1.2535 34 1 3.8553 5.6552 1.8945 35 1 6.4848 4.1314 2.1791 36 1 6.2632 5.8781 2.4423 37 1 5.4684 4.7076 3.5220 38 1 4.1267 5.1454 -0.5170 39 1 5.4796 6.1338 0.0833 40 1 5.7013 4.3871 -0.1795 41 1 4.2566 -0.9602 -0.6464 42 1 4.0419 -1.7199 0.9895 43 1 3.6832 -3.7697 -0.3048 44 1 3.1397 -2.8276 -1.7625 45 1 1.7341 -3.0521 0.9981 46 1 0.9598 -2.8633 -0.6341 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825700174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:48 Heat of formation + Delta-G solvation = -16.103689 kcal Electronic energy + Delta-G solvation = -22942.045949 eV Core-core repulsion = 19832.250915 eV Total energy + Delta-G solvation = -3109.795034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.59476 -38.09342 -36.47839 -34.96375 -32.71945 -32.31120 -29.26376 -27.70579 -27.01889 -25.99135 -25.07858 -23.72316 -22.71955 -21.61690 -19.80052 -19.17532 -17.09087 -17.04111 -16.00418 -15.69094 -15.19985 -15.03188 -14.59311 -14.16159 -14.04470 -13.37810 -13.26836 -12.97672 -12.75493 -12.54910 -12.27071 -12.24029 -12.06003 -11.85098 -11.71121 -11.62634 -11.49856 -11.11791 -11.01157 -10.92293 -10.79639 -10.66674 -10.50152 -10.41504 -10.23187 -10.09171 -10.03820 -9.65546 -8.96446 -8.79006 -8.21516 -7.72110 -6.29735 -4.27940 2.12496 3.14173 3.22905 3.24648 3.59741 3.89685 4.20968 4.73892 4.83609 4.96471 5.00172 5.06622 5.11782 5.14298 5.28646 5.49159 5.67563 5.72294 5.74609 5.80310 5.82838 5.89029 5.96286 5.97810 5.98899 6.01193 6.10171 6.17568 6.25236 6.32835 6.38107 6.40048 6.47734 6.49266 6.52499 6.57781 6.65062 6.73362 6.76256 7.09180 7.30618 7.44110 7.58048 8.10008 8.40019 8.76501 8.94335 9.28699 10.81599 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.008151 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.019247 B = 3434.523090 C = 5626.016774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C 0.560 3.440 4 O -0.566 6.566 5 N -0.585 5.585 6 C 0.204 3.796 7 C -0.537 4.537 8 H 0.083 0.917 9 C 0.079 3.921 10 N -0.883 5.883 11 Si 0.867 3.133 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.261 1.261 15 C 0.120 3.880 16 C -0.128 4.128 17 C -0.094 4.094 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.134 4.134 21 C -0.105 4.105 22 C -0.136 4.136 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.145 0.855 27 H 0.041 0.959 28 H 0.027 0.973 29 H 0.268 0.732 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.187 -4.130 0.163 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C 0.349 3.651 4 O -0.447 6.447 5 N -0.314 5.314 6 C 0.083 3.917 7 C -0.574 4.574 8 H 0.101 0.899 9 C -0.126 4.126 10 N -0.520 5.520 11 Si 0.693 3.307 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.186 1.186 15 C -0.003 4.003 16 C -0.167 4.167 17 C -0.113 4.113 18 C -0.202 4.202 19 C -0.204 4.204 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.173 4.173 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.162 0.838 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.419 -3.992 -0.181 12.098 hybrid contribution -0.203 -0.437 0.963 1.077 sum 11.217 -4.429 0.782 12.085 Atomic orbital electron populations 1.21662 0.89120 1.05975 1.04229 1.20591 0.96975 0.90960 1.02685 1.18337 0.82032 0.84074 0.80607 1.90685 1.32901 1.80964 1.40187 1.47834 1.41837 1.12306 1.29454 1.19944 0.88248 0.97462 0.86095 1.21278 0.91630 1.37784 1.06752 0.89934 1.24887 0.95041 0.94891 0.97764 1.69885 1.00585 1.44318 1.37178 0.86978 0.78408 0.80800 0.84535 1.19807 1.20710 1.18578 1.21393 0.93044 0.85125 1.00748 1.21999 0.97359 0.96743 1.00562 1.21051 0.97003 0.97585 0.95685 1.21820 0.97802 1.01205 0.99337 1.21868 1.01531 1.00720 0.96284 1.22816 0.96815 0.93545 1.00375 1.22079 0.94764 0.96516 1.00851 1.22612 0.97100 0.97435 1.00168 1.22109 0.97814 0.92603 1.00943 0.92443 0.92996 0.83778 0.94066 0.95528 0.92172 0.90741 0.90115 0.92092 0.91888 0.91098 0.92942 0.93027 0.92871 0.92217 0.93285 0.92789 0.90472 0.89714 0.91169 0.90034 0.89204 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.44 36.01 0.34 -2.76 16 2 C -0.11 -2.19 4.62 -102.84 -0.47 -2.66 16 3 C 0.56 12.14 7.08 -12.66 -0.09 12.05 16 4 O -0.57 -13.11 16.44 5.27 0.09 -13.02 16 5 N -0.59 -12.31 2.46 -176.46 -0.43 -12.74 16 6 C 0.20 4.51 3.71 -5.20 -0.02 4.50 16 7 C -0.54 -13.57 7.05 -34.44 -0.24 -13.81 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 9 C 0.08 2.05 5.44 -17.82 -0.10 1.95 16 10 N -0.88 -24.66 13.96 55.43 0.77 -23.89 16 11 Si 0.87 19.35 27.47 -169.99 -4.67 14.68 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 15 C 0.12 2.22 5.12 -4.04 -0.02 2.20 16 16 C -0.13 -2.03 5.01 -26.73 -0.13 -2.16 16 17 C -0.09 -1.24 2.92 -90.62 -0.26 -1.50 16 18 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 19 C -0.15 -1.87 8.95 37.15 0.33 -1.54 16 20 C -0.13 -2.33 6.58 -100.48 -0.66 -2.99 16 21 C -0.11 -1.58 7.76 -27.56 -0.21 -1.80 16 22 C -0.14 -1.68 8.17 -26.19 -0.21 -1.90 16 23 C -0.10 -1.34 7.56 -27.40 -0.21 -1.54 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.93 7.69 -51.93 -0.40 0.53 16 26 H 0.14 3.30 3.00 -51.93 -0.16 3.15 16 27 H 0.04 0.92 5.05 -51.92 -0.26 0.66 16 28 H 0.03 0.58 7.56 -51.93 -0.39 0.18 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.07 1.41 5.93 -51.93 -0.31 1.10 16 31 H 0.08 1.50 8.07 -51.93 -0.42 1.08 16 32 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.27 8.00 -51.93 -0.42 0.85 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -28.22 361.90 -8.62 -36.84 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.20 Total: 5.94 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.62 Total: -13.26 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.34 Total: -36.63 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.67 Total: 14.68 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.22 -8.62 -36.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825700174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.732 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds