Wall clock time and date at job start Tue Mar 31 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47099 * 120.00594 * 2 1 4 4 O 1.21614 * 120.00002 * 230.96454 * 3 2 1 5 5 N 1.34782 * 119.99387 * 50.95985 * 3 2 1 6 6 C 1.46490 * 120.00565 * 5.70706 * 5 3 2 7 7 C 1.50696 * 109.47142 * 261.61214 * 6 5 3 8 8 H 1.07992 * 120.00375 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99802 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99934 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00240 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46878 * 89.99548 * 11 9 7 13 13 H 1.48502 * 109.47104 * 209.99533 * 11 9 7 14 14 H 1.48502 * 109.46907 * 329.99631 * 11 9 7 15 15 C 1.46503 * 119.99274 * 185.43063 * 5 3 2 16 16 C 1.53001 * 109.46993 * 270.27685 * 15 5 3 17 17 C 1.52999 * 109.47243 * 180.02562 * 16 15 5 18 18 C 1.53000 * 109.47160 * 174.99611 * 17 16 15 19 19 C 1.52991 * 109.47333 * 295.00284 * 17 16 15 20 20 C 1.33001 * 119.99441 * 180.02562 * 2 1 3 21 21 C 1.51405 * 136.31458 * 179.63238 * 20 2 1 22 22 C 1.53376 * 87.51781 * 206.05274 * 21 20 2 23 23 C 1.51398 * 136.31860 * 359.97438 * 20 2 1 24 24 H 1.09003 * 109.46920 * 81.02422 * 1 2 3 25 25 H 1.09000 * 109.47425 * 201.02961 * 1 2 3 26 26 H 1.09002 * 109.46498 * 321.03086 * 1 2 3 27 27 H 1.09007 * 109.46693 * 21.61024 * 6 5 3 28 28 H 1.08998 * 109.47414 * 141.60673 * 6 5 3 29 29 H 0.96996 * 120.00324 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.47642 * 30.27332 * 15 5 3 31 31 H 1.08996 * 109.46760 * 150.28276 * 15 5 3 32 32 H 1.09007 * 109.47177 * 300.00206 * 16 15 5 33 33 H 1.09007 * 109.47543 * 60.00370 * 16 15 5 34 34 H 1.09003 * 109.46795 * 55.00336 * 17 16 15 35 35 H 1.09003 * 109.46675 * 60.00651 * 18 17 16 36 36 H 1.09001 * 109.47050 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47649 * 300.00299 * 18 17 16 38 38 H 1.08995 * 109.47529 * 59.99571 * 19 17 16 39 39 H 1.09001 * 109.47277 * 179.97438 * 19 17 16 40 40 H 1.09003 * 109.47222 * 299.99790 * 19 17 16 41 41 H 1.09002 * 113.55800 * 320.63514 * 21 20 2 42 42 H 1.08998 * 113.55733 * 91.36862 * 21 20 2 43 43 H 1.08990 * 113.96839 * 220.28933 * 22 21 20 44 44 H 1.09000 * 113.59682 * 88.79222 * 22 21 20 45 45 H 1.09004 * 113.56256 * 268.63408 * 23 20 2 46 46 H 1.09004 * 113.56355 * 39.36065 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2427 1.2738 0.0000 4 8 3.1212 1.4687 -0.8181 5 7 1.9429 2.2250 0.9067 6 6 0.9739 1.9450 1.9690 7 6 -0.3718 2.5012 1.5809 8 1 -0.4932 3.0118 0.6370 9 6 -1.4483 2.3573 2.4303 10 7 -2.6228 2.8423 2.0914 11 14 -1.2385 1.4736 4.0626 12 1 -0.8590 2.4543 5.1112 13 1 -2.5165 0.8172 4.4380 14 1 -0.1730 0.4468 3.9362 15 6 2.5908 3.5369 0.8332 16 6 3.8821 3.5147 1.6535 17 6 4.5584 4.8849 1.5774 18 6 5.7817 4.9017 2.4962 19 6 4.9982 5.1573 0.1376 20 6 2.1719 -1.1519 -0.0005 21 6 3.6250 -1.5774 -0.0074 22 6 3.1706 -2.8817 -0.6743 23 6 1.8137 -2.6229 -0.0007 24 1 -0.3633 0.1603 -1.0151 25 1 -0.3634 -0.9592 0.3688 26 1 -0.3632 0.7990 0.6463 27 1 0.8939 0.8675 2.1130 28 1 1.3063 2.4118 2.8963 29 1 -3.3800 2.7414 2.6891 30 1 2.8244 3.7692 -0.2058 31 1 1.9193 4.2966 1.2333 32 1 3.6485 3.2824 2.6926 33 1 4.5537 2.7549 1.2535 34 1 3.8553 5.6552 1.8945 35 1 6.4848 4.1314 2.1791 36 1 6.2632 5.8781 2.4423 37 1 5.4684 4.7076 3.5220 38 1 4.1267 5.1454 -0.5170 39 1 5.4796 6.1338 0.0833 40 1 5.7013 4.3871 -0.1795 41 1 4.2566 -0.9602 -0.6464 42 1 4.0419 -1.7199 0.9895 43 1 3.6832 -3.7697 -0.3048 44 1 3.1397 -2.8276 -1.7625 45 1 1.7341 -3.0521 0.9981 46 1 0.9598 -2.8633 -0.6341 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825700174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:47 Heat of formation + Delta-G solvation = -29.764002 kcal Electronic energy + Delta-G solvation = -22942.638305 eV Core-core repulsion = 19832.250915 eV Total energy + Delta-G solvation = -3110.387390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16884 -39.36973 -37.78114 -36.62401 -34.54235 -33.84888 -30.81615 -29.40099 -28.02509 -27.32369 -26.32250 -25.08600 -24.58307 -22.92690 -20.94037 -20.63458 -19.05715 -18.58332 -17.59216 -17.14592 -16.51339 -16.28956 -16.09030 -15.75000 -15.46747 -14.72375 -14.66683 -14.49547 -14.35946 -14.18893 -13.66287 -13.43652 -13.32713 -13.24263 -13.08129 -12.83844 -12.74733 -12.70522 -12.53357 -12.28184 -12.18213 -11.96084 -11.83587 -11.77324 -11.62799 -11.55765 -11.44164 -11.30480 -10.76931 -10.56508 -9.67776 -9.41633 -8.30723 -6.33229 0.65915 1.39003 1.41541 1.50605 1.97356 2.30376 2.33611 3.01970 3.42756 3.62371 3.80504 3.90912 3.93871 4.05965 4.10257 4.27398 4.33991 4.53629 4.55792 4.66043 4.67230 4.73909 4.76522 4.80566 4.81584 4.84495 4.85019 4.93442 4.96103 5.01529 5.03010 5.08345 5.10914 5.12605 5.25854 5.30362 5.39284 5.40566 5.45480 5.49697 5.64289 5.74245 5.97723 6.17132 6.60478 6.69436 7.20526 7.32068 8.84421 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.008151 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.019247 B = 3434.523090 C = 5626.016774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 C 0.555 3.445 4 O -0.591 6.591 5 N -0.591 5.591 6 C 0.216 3.784 7 C -0.527 4.527 8 H 0.035 0.965 9 C 0.029 3.971 10 N -0.933 5.933 11 Si 0.930 3.070 12 H -0.265 1.265 13 H -0.281 1.281 14 H -0.241 1.241 15 C 0.117 3.883 16 C -0.115 4.115 17 C -0.093 4.093 18 C -0.140 4.140 19 C -0.145 4.145 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.094 4.094 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.270 0.730 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.018 -6.237 1.864 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.345 3.655 4 O -0.475 6.475 5 N -0.319 5.319 6 C 0.094 3.906 7 C -0.565 4.565 8 H 0.054 0.946 9 C -0.172 4.172 10 N -0.571 5.571 11 Si 0.752 3.248 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.164 1.164 15 C -0.006 4.006 16 C -0.154 4.154 17 C -0.112 4.112 18 C -0.197 4.197 19 C -0.202 4.202 20 C -0.125 4.125 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.131 4.131 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.133 0.867 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.132 0.868 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.272 -6.092 1.516 14.682 hybrid contribution -0.733 0.209 0.300 0.819 sum 12.539 -5.883 1.816 13.970 Atomic orbital electron populations 1.21424 0.89707 1.05783 1.03037 1.20447 0.96652 0.91109 1.07643 1.18741 0.81851 0.84827 0.80063 1.90648 1.34262 1.81603 1.40940 1.47935 1.41653 1.13059 1.29259 1.19751 0.86720 0.97544 0.86606 1.21249 0.93530 1.36906 1.04861 0.94621 1.25656 0.94362 0.95629 1.01503 1.70026 1.01681 1.46501 1.38926 0.85973 0.78893 0.80156 0.79750 1.18965 1.20636 1.16377 1.21505 0.94194 0.84098 1.00762 1.21884 0.95559 0.98220 0.99722 1.21064 0.97850 0.95787 0.96455 1.21778 0.96745 1.02285 0.98879 1.21844 1.00833 1.01767 0.95739 1.23533 0.98873 0.94752 0.95339 1.22273 0.92966 0.97720 1.01927 1.22585 0.95910 0.97081 1.00046 1.22290 0.98955 0.89250 1.02605 0.93469 0.90963 0.86695 0.93410 0.94359 0.92083 0.91803 0.90760 0.91826 0.93185 0.90709 0.92960 0.91257 0.92433 0.93862 0.91096 0.93375 0.92450 0.87827 0.87809 0.90026 0.86849 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 9.44 71.24 0.67 -5.17 16 2 C -0.16 -6.24 4.62 -18.70 -0.09 -6.32 16 3 C 0.55 24.65 7.08 86.57 0.61 25.26 16 4 O -0.59 -28.26 16.44 -4.07 -0.07 -28.33 16 5 N -0.59 -25.49 2.46 -830.46 -2.05 -27.54 16 6 C 0.22 9.58 3.71 85.63 0.32 9.90 16 7 C -0.53 -27.59 7.05 25.60 0.18 -27.41 16 8 H 0.04 2.16 8.06 -2.91 -0.02 2.13 16 9 C 0.03 1.52 5.44 84.66 0.46 1.98 16 10 N -0.93 -53.77 13.96 21.45 0.30 -53.48 16 11 Si 0.93 39.30 27.47 68.60 1.88 41.18 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 13 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 14 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 15 C 0.12 4.49 5.12 86.38 0.44 4.93 16 16 C -0.12 -3.64 5.01 30.59 0.15 -3.49 16 17 C -0.09 -2.35 2.92 -10.80 -0.03 -2.38 16 18 C -0.14 -2.88 9.19 71.98 0.66 -2.22 16 19 C -0.14 -3.63 8.95 71.98 0.64 -2.98 16 20 C -0.12 -4.07 6.58 -17.17 -0.11 -4.19 16 21 C -0.11 -3.09 7.76 30.06 0.23 -2.86 16 22 C -0.12 -2.48 8.17 30.95 0.25 -2.22 16 23 C -0.09 -2.22 7.56 30.16 0.23 -1.99 16 24 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 2.54 7.69 -2.39 -0.02 2.52 16 26 H 0.12 5.42 3.00 -2.39 -0.01 5.41 16 27 H 0.05 2.09 5.05 -2.38 -0.01 2.08 16 28 H 0.04 1.62 7.56 -2.39 -0.02 1.60 16 29 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.06 2.56 5.93 -2.39 -0.01 2.55 16 31 H 0.07 2.89 8.07 -2.39 -0.02 2.87 16 32 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 1.21 6.57 -2.39 -0.02 1.19 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 42 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -63.71 361.90 5.57 -58.14 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.87 Total: 29.19 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.63 Total: -19.17 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -1.75 Total: -81.01 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.07 Total: -28.33 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.88 Total: 41.18 kcal Total: -63.71 5.57 -58.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825700174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.374 kcal (2) G-P(sol) polarization free energy of solvation -63.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds