Wall clock time and date at job start Tue Mar 31 2020 00:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.47093 * 119.99792 * 2 1 4 4 O 1.21614 * 120.00007 * 231.59152 * 3 2 1 5 5 N 1.34778 * 120.00112 * 51.59334 * 3 2 1 6 6 C 1.46497 * 119.99897 * 3.11165 * 5 3 2 7 7 C 1.50707 * 109.47174 * 248.35908 * 6 5 3 8 8 H 1.08000 * 119.99857 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00148 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00245 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00105 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47059 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46828 * 120.00224 * 11 9 7 14 14 H 1.48499 * 109.47525 * 240.00174 * 11 9 7 15 15 C 1.46507 * 120.00195 * 182.83448 * 5 3 2 16 16 C 1.52993 * 109.47115 * 270.33819 * 15 5 3 17 17 C 1.53010 * 109.46814 * 55.05339 * 16 15 5 18 18 C 1.52996 * 109.47095 * 175.04812 * 16 15 5 19 19 C 1.53000 * 109.47798 * 295.05343 * 16 15 5 20 20 C 1.32994 * 119.99832 * 180.02562 * 2 1 3 21 21 C 1.51402 * 136.31118 * 179.62633 * 20 2 1 22 22 C 1.53375 * 87.51907 * 206.05522 * 21 20 2 23 23 C 1.51398 * 136.31778 * 359.97438 * 20 2 1 24 24 H 1.08998 * 109.47526 * 53.69582 * 1 2 3 25 25 H 1.09004 * 109.47182 * 173.69883 * 1 2 3 26 26 H 1.08996 * 109.46788 * 293.69263 * 1 2 3 27 27 H 1.08995 * 109.47140 * 8.35818 * 6 5 3 28 28 H 1.09000 * 109.47391 * 128.35998 * 6 5 3 29 29 H 0.96992 * 120.00549 * 179.97438 * 10 9 7 30 30 H 1.09005 * 109.46816 * 30.34232 * 15 5 3 31 31 H 1.09003 * 109.46992 * 150.34068 * 15 5 3 32 32 H 1.08998 * 109.47072 * 61.35016 * 17 16 15 33 33 H 1.09005 * 109.46727 * 181.34592 * 17 16 15 34 34 H 1.08997 * 109.46770 * 301.34761 * 17 16 15 35 35 H 1.09003 * 109.46989 * 60.00763 * 18 16 15 36 36 H 1.09003 * 109.47486 * 180.02562 * 18 16 15 37 37 H 1.08997 * 109.47551 * 300.00262 * 18 16 15 38 38 H 1.09003 * 109.46766 * 59.99777 * 19 16 15 39 39 H 1.08992 * 109.47423 * 179.97438 * 19 16 15 40 40 H 1.08999 * 109.46812 * 300.00419 * 19 16 15 41 41 H 1.08994 * 113.56672 * 320.63778 * 21 20 2 42 42 H 1.09003 * 113.55999 * 91.37911 * 21 20 2 43 43 H 1.08995 * 113.97672 * 220.29544 * 22 21 20 44 44 H 1.09008 * 113.59785 * 88.79145 * 22 21 20 45 45 H 1.08998 * 113.56377 * 268.62637 * 23 20 2 46 46 H 1.08999 * 113.56439 * 39.36237 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.1132 1.4734 -0.8253 5 7 1.9514 2.2201 0.9146 6 6 0.9507 1.9539 1.9509 7 6 -0.2618 2.8164 1.7117 8 1 -0.2844 3.4952 0.8720 9 6 -1.3422 2.7388 2.5647 10 7 -1.3145 1.9126 3.5876 11 14 -2.8447 3.8084 2.2686 12 1 -2.6266 4.6452 1.0614 13 1 -4.0348 2.9441 2.0629 14 1 -3.0677 4.6858 3.4458 15 6 2.6402 3.5125 0.8763 16 6 3.9122 3.4379 1.7232 17 6 4.7779 2.2718 1.2414 18 6 4.6947 4.7452 1.5844 19 6 3.5362 3.2217 3.1904 20 6 2.1720 -1.1518 -0.0005 21 6 3.6250 -1.5771 -0.0075 22 6 3.1709 -2.8815 -0.6744 23 6 1.8138 -2.6228 -0.0007 24 1 -0.3634 0.6084 -0.8281 25 1 -0.3634 -1.0215 -0.1128 26 1 -0.3633 0.4129 0.9410 27 1 0.6619 0.9035 1.9158 28 1 1.3717 2.1825 2.9299 29 1 -2.0743 1.8583 4.1879 30 1 2.9031 3.7537 -0.1537 31 1 1.9836 4.2861 1.2744 32 1 5.0657 2.4376 0.2033 33 1 5.6727 2.2038 1.8602 34 1 4.2119 1.3434 1.3178 35 1 4.0781 5.5759 1.9276 36 1 5.6012 4.6919 2.1874 37 1 4.9627 4.8992 0.5392 38 1 2.9788 2.2903 3.2892 39 1 4.4424 3.1681 3.7936 40 1 2.9195 4.0524 3.5336 41 1 4.2566 -0.9599 -0.6465 42 1 4.0421 -1.7197 0.9894 43 1 3.6835 -3.7696 -0.3049 44 1 3.1398 -2.8274 -1.7627 45 1 1.7344 -3.0521 0.9980 46 1 0.9600 -2.8633 -0.6341 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825727813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:09 Heat of formation + Delta-G solvation = -19.845964 kcal Electronic energy + Delta-G solvation = -23648.452237 eV Core-core repulsion = 20538.494926 eV Total energy + Delta-G solvation = -3109.957311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.31003 -39.48175 -37.92355 -36.22932 -34.29224 -33.57488 -29.51585 -28.20648 -28.07068 -27.69364 -27.09917 -26.31222 -24.81832 -23.22169 -21.04839 -19.65341 -18.59197 -18.46166 -17.42182 -17.13375 -16.60278 -16.28000 -16.12447 -15.58176 -15.20975 -15.02513 -14.44104 -14.26739 -14.15234 -13.96529 -13.54364 -13.31853 -13.19731 -13.03628 -12.93892 -12.86031 -12.70881 -12.62970 -12.47914 -12.40495 -12.12256 -11.97829 -11.97000 -11.79608 -11.57802 -11.49088 -11.43735 -11.26542 -10.61953 -10.36390 -9.64515 -9.27478 -8.15347 -6.27237 0.73229 1.40106 1.44413 1.53715 2.04387 2.36715 2.54114 3.15206 3.48970 3.65130 3.82831 3.90962 3.92795 4.08399 4.14115 4.29979 4.50204 4.58860 4.60094 4.75462 4.75871 4.81316 4.81740 4.85898 4.88553 4.91036 4.93273 4.99145 5.03778 5.04763 5.07366 5.10887 5.20041 5.23094 5.27868 5.34387 5.41740 5.50608 5.53399 5.58552 5.74767 5.87453 5.97699 6.12916 6.68768 6.88138 7.35886 7.47921 8.90268 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012145 B = 0.007758 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.884578 B = 3608.524017 C = 5265.965121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.159 4.159 3 C 0.553 3.447 4 O -0.588 6.588 5 N -0.584 5.584 6 C 0.235 3.765 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.027 3.973 10 N -0.916 5.916 11 Si 0.949 3.051 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.128 3.872 16 C -0.080 4.080 17 C -0.117 4.117 18 C -0.129 4.129 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.094 4.094 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.025 0.975 29 H 0.266 0.734 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 -4.933 -2.874 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.161 4.161 3 C 0.343 3.657 4 O -0.472 6.472 5 N -0.312 5.312 6 C 0.115 3.885 7 C -0.573 4.573 8 H 0.067 0.933 9 C -0.173 4.173 10 N -0.556 5.556 11 Si 0.775 3.225 12 H -0.199 1.199 13 H -0.204 1.204 14 H -0.206 1.206 15 C 0.005 3.995 16 C -0.081 4.081 17 C -0.174 4.174 18 C -0.187 4.187 19 C -0.192 4.192 20 C -0.123 4.123 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.127 0.873 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.617 -4.862 -3.122 10.375 hybrid contribution -1.213 0.868 0.012 1.492 sum 7.404 -3.995 -3.110 8.970 Atomic orbital electron populations 1.20909 0.89643 1.02402 1.03355 1.20473 0.96635 0.91492 1.07546 1.18595 0.82023 0.84611 0.80484 1.90646 1.34581 1.81214 1.40770 1.48070 1.39395 1.13921 1.29851 1.19618 0.85268 0.97647 0.85945 1.21563 1.00994 1.23293 1.11473 0.93341 1.25501 1.00706 0.96480 0.94657 1.70008 1.32100 1.37682 1.15773 0.85650 0.79896 0.79001 0.77970 1.19863 1.20426 1.20552 1.21442 0.93231 0.85237 0.99564 1.20920 0.94745 0.97033 0.95418 1.21694 0.98491 0.96924 1.00304 1.21734 0.99890 0.95082 1.01991 1.21911 1.00939 1.01338 0.95001 1.23458 0.98797 0.94695 0.95379 1.22232 0.93088 0.97797 1.01662 1.22596 0.95884 0.96976 1.00111 1.22273 0.99021 0.89345 1.02443 0.93116 0.90487 0.89731 0.93478 0.95712 0.92464 0.92211 0.91049 0.93462 0.92083 0.95278 0.92116 0.91039 0.92598 0.93996 0.91555 0.93165 0.92296 0.88410 0.88060 0.89775 0.87304 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 9.44 71.24 0.67 -3.47 16 2 C -0.16 -6.29 4.75 -18.70 -0.09 -6.38 16 3 C 0.55 24.22 5.43 86.57 0.47 24.69 16 4 O -0.59 -27.26 14.40 -4.08 -0.06 -27.32 16 5 N -0.58 -25.52 2.07 -830.43 -1.72 -27.24 16 6 C 0.24 11.30 4.32 85.64 0.37 11.67 16 7 C -0.53 -27.58 7.94 25.60 0.20 -27.37 16 8 H 0.05 2.58 7.81 -2.91 -0.02 2.55 16 9 C 0.03 1.39 5.46 84.65 0.46 1.86 16 10 N -0.92 -49.50 13.29 21.45 0.28 -49.22 16 11 Si 0.95 41.67 29.54 68.60 2.03 43.70 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 C 0.13 5.06 4.47 86.38 0.39 5.45 16 16 C -0.08 -2.65 0.85 -52.18 -0.04 -2.69 16 17 C -0.12 -3.94 7.07 71.99 0.51 -3.43 16 18 C -0.13 -3.39 8.47 71.98 0.61 -2.78 16 19 C -0.13 -4.52 7.71 71.98 0.55 -3.96 16 20 C -0.12 -4.05 6.60 -17.18 -0.11 -4.16 16 21 C -0.11 -3.15 7.77 30.06 0.23 -2.91 16 22 C -0.12 -2.51 8.17 30.95 0.25 -2.26 16 23 C -0.09 -2.26 7.45 30.16 0.22 -2.03 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.08 2.51 7.35 -2.39 -0.02 2.49 16 26 H 0.08 3.82 4.57 -2.39 -0.01 3.81 16 27 H 0.05 2.36 4.29 -2.39 -0.01 2.35 16 28 H 0.03 1.27 5.34 -2.39 -0.01 1.26 16 29 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.06 2.41 7.47 -2.38 -0.02 2.39 16 31 H 0.07 2.90 7.64 -2.39 -0.02 2.88 16 32 H 0.05 1.69 7.44 -2.39 -0.02 1.67 16 33 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.03 1.10 6.07 -2.39 -0.01 1.08 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.62 5.47 -2.39 -0.01 1.61 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.90 8.03 -2.39 -0.02 1.88 16 42 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.08 1.83 7.98 -2.39 -0.02 1.81 16 Total: -1.00 -59.43 353.85 6.18 -53.25 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.94 Total: 24.62 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 4.70 Total: -17.79 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.43 Total: -76.45 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -59.43 6.18 -53.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825727813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.402 kcal (2) G-P(sol) polarization free energy of solvation -59.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds