Wall clock time and date at job start Tue Mar 31 2020 01:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 C 1.53005 * 109.46846 * 175.19258 * 3 2 1 5 5 C 1.53000 * 109.47079 * 55.18934 * 3 2 1 6 6 N 1.46506 * 109.46836 * 295.18745 * 3 2 1 7 7 C 1.46494 * 120.00003 * 334.68094 * 6 3 2 8 8 C 1.50705 * 109.46956 * 114.74394 * 7 6 3 9 9 H 1.07995 * 120.00385 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99795 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00209 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99874 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47183 * 59.99754 * 12 10 8 14 14 H 1.48503 * 109.47154 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47045 * 299.99691 * 12 10 8 16 16 C 1.34777 * 119.99593 * 154.40172 * 6 3 2 17 17 O 1.21612 * 119.99841 * 189.29720 * 16 6 3 18 18 C 1.47103 * 119.99957 * 9.30477 * 16 6 3 19 19 C 1.50703 * 120.00317 * 38.23190 * 18 16 6 20 20 C 1.32990 * 119.99508 * 218.23510 * 18 16 6 21 21 C 1.51405 * 136.31773 * 359.62711 * 20 18 16 22 22 C 1.53384 * 87.51817 * 206.05365 * 21 20 18 23 23 C 1.51411 * 136.31534 * 179.97438 * 20 18 16 24 24 H 1.08998 * 109.47267 * 58.47180 * 1 2 3 25 25 H 1.09008 * 109.47319 * 178.46845 * 1 2 3 26 26 H 1.08998 * 109.47145 * 298.46524 * 1 2 3 27 27 H 1.09005 * 109.47152 * 239.99969 * 2 1 3 28 28 H 1.09002 * 109.47146 * 120.00453 * 2 1 3 29 29 H 1.08993 * 109.46802 * 132.57260 * 4 3 2 30 30 H 1.09007 * 109.46524 * 252.56610 * 4 3 2 31 31 H 1.08995 * 109.47449 * 12.57172 * 4 3 2 32 32 H 1.09000 * 109.46763 * 315.31440 * 5 3 2 33 33 H 1.08998 * 109.47051 * 75.31729 * 5 3 2 34 34 H 1.08994 * 109.46529 * 195.31659 * 5 3 2 35 35 H 1.09002 * 109.47073 * 234.73981 * 7 6 3 36 36 H 1.09001 * 109.47664 * 354.74011 * 7 6 3 37 37 H 0.96994 * 120.00232 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.47012 * 49.80308 * 19 18 16 39 39 H 1.08995 * 109.46617 * 169.80204 * 19 18 16 40 40 H 1.08998 * 109.47180 * 289.80315 * 19 18 16 41 41 H 1.08994 * 113.56364 * 320.63527 * 21 20 18 42 42 H 1.09002 * 113.55898 * 91.37713 * 21 20 18 43 43 H 1.08994 * 113.97045 * 220.28429 * 22 21 20 44 44 H 1.09005 * 113.59524 * 88.79586 * 22 21 20 45 45 H 1.08999 * 113.56170 * 268.62904 * 23 20 18 46 46 H 1.09001 * 113.56017 * 39.35971 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4441 0.1209 5 6 1.4336 2.1978 1.1844 6 7 1.6485 2.0988 -1.2500 7 6 1.4019 1.2981 -2.4517 8 6 -0.0508 1.4063 -2.8380 9 1 -0.7231 2.0106 -2.2472 10 6 -0.5214 0.7336 -3.9457 11 7 0.2974 -0.0019 -4.6655 12 14 -2.3222 0.8672 -4.4242 13 1 -2.6577 2.2876 -4.6976 14 1 -2.5719 0.0566 -5.6431 15 1 -3.1684 0.3638 -3.3125 16 6 1.5098 3.4388 -1.2927 17 8 1.0245 3.9688 -2.2738 18 6 1.9457 4.2600 -0.1528 19 6 3.2012 3.9000 0.5991 20 6 1.2318 5.3203 0.2143 21 6 -0.0342 6.0043 -0.2568 22 6 0.5197 7.2999 0.3492 23 6 1.3256 6.3859 1.2859 24 1 -0.3634 0.5374 -0.8759 25 1 -0.3634 -1.0274 -0.0275 26 1 -0.3633 0.4898 0.9034 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9880 2.1183 -0.6239 30 1 3.8502 1.7797 1.1181 31 1 3.9440 0.4356 -0.0453 32 1 0.3695 1.9718 1.2530 33 1 1.9305 1.8901 2.1044 34 1 1.5689 3.2696 1.0393 35 1 2.0233 1.6668 -3.2678 36 1 1.6477 0.2554 -2.2504 37 1 -0.0338 -0.4754 -5.4446 38 1 4.0163 3.7452 -0.1079 39 1 3.4607 4.7093 1.2814 40 1 3.0345 2.9850 1.1674 41 1 -0.1324 6.0398 -1.3417 42 1 -0.9352 5.6421 0.2385 43 1 -0.2287 7.9048 0.8610 44 1 1.1356 7.8761 -0.3413 45 1 0.7973 6.1283 2.2038 46 1 2.3426 6.7343 1.4660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839327579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:52 Heat of formation + Delta-G solvation = 74.038874 kcal Electronic energy + Delta-G solvation = -24183.757248 eV Core-core repulsion = 21077.871089 eV Total energy + Delta-G solvation = -3105.886159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71623 -38.29025 -36.70331 -34.27499 -32.60626 -31.58163 -29.86206 -27.53458 -26.71920 -25.95727 -25.32635 -23.61396 -22.76930 -21.79612 -20.47402 -18.55060 -16.94151 -16.41433 -15.86590 -15.58678 -15.23545 -14.96664 -14.60185 -14.15040 -13.92499 -13.63688 -13.13395 -13.00723 -12.53462 -12.48458 -12.29616 -12.07040 -11.83551 -11.69889 -11.51954 -11.32717 -11.11069 -11.01337 -10.80310 -10.69350 -10.55705 -10.39530 -10.34576 -10.12981 -9.96933 -9.87271 -9.72462 -9.47623 -8.62113 -8.30672 -8.20922 -7.48974 -5.95745 -3.94060 1.91806 3.38149 3.41909 3.47093 3.77799 4.01240 4.51185 4.62431 4.69903 4.89988 5.09934 5.15359 5.21287 5.32421 5.38757 5.43165 5.48657 5.65995 5.72764 5.77032 5.79799 5.84746 5.87876 5.93542 6.02671 6.05243 6.15133 6.19283 6.22225 6.31540 6.39560 6.43533 6.44130 6.58196 6.64760 6.66816 6.85583 7.00151 7.25577 7.42326 7.52119 7.70465 8.03501 8.28043 8.61181 9.03579 9.26724 9.66955 11.12875 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.007239 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.484279 B = 3866.987531 C = 4876.851597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.117 4.117 3 C 0.166 3.834 4 C -0.171 4.171 5 C -0.221 4.221 6 N -0.587 5.587 7 C 0.245 3.755 8 C -0.498 4.498 9 H 0.059 0.941 10 C 0.059 3.941 11 N -0.899 5.899 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.546 3.454 17 O -0.521 6.521 18 C -0.119 4.119 19 C -0.160 4.160 20 C -0.126 4.126 21 C -0.105 4.105 22 C -0.137 4.137 23 C -0.099 4.099 24 H 0.107 0.893 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.023 0.977 36 H 0.047 0.953 37 H 0.261 0.739 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 6.440 14.905 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.155 4.155 3 C 0.080 3.920 4 C -0.229 4.229 5 C -0.276 4.276 6 N -0.319 5.319 7 C 0.126 3.874 8 C -0.537 4.537 9 H 0.077 0.923 10 C -0.142 4.142 11 N -0.539 5.539 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.204 1.204 16 C 0.333 3.667 17 O -0.397 6.397 18 C -0.122 4.122 19 C -0.215 4.215 20 C -0.128 4.128 21 C -0.141 4.141 22 C -0.175 4.175 23 C -0.136 4.136 24 H 0.126 0.874 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.137 0.863 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.621 6.570 14.187 16.303 hybrid contribution -0.928 -0.141 -0.321 0.992 sum 3.693 6.430 13.866 15.724 Atomic orbital electron populations 1.22236 0.95082 1.01593 1.04213 1.21828 0.97587 0.94364 1.01688 1.20350 0.93049 0.93555 0.85003 1.23037 0.96005 1.02243 1.01632 1.23812 1.02066 1.05043 0.96686 1.48256 1.66755 1.05485 1.11411 1.19351 0.96729 0.90742 0.80553 1.21212 0.94047 1.27713 1.10701 0.92289 1.24880 0.97708 0.95498 0.96137 1.69912 1.34819 1.31417 1.17796 0.86642 0.85417 0.78156 0.77744 1.20223 1.21395 1.20375 1.18027 0.79453 0.82498 0.86711 1.90786 1.42773 1.72150 1.34039 1.20371 0.98971 0.94824 0.98024 1.22635 0.94559 1.04274 1.00066 1.22895 0.98210 0.93182 0.98476 1.22089 0.95459 0.93910 1.02686 1.22638 0.99776 0.96080 0.98978 1.22161 1.00711 0.94221 0.96467 0.87423 0.93985 0.94097 0.90356 0.92533 0.91295 0.91607 0.92759 0.91819 0.92078 0.86546 0.95937 0.93533 0.92907 0.91431 0.92534 0.86265 0.89628 0.89427 0.91057 0.90002 0.89067 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 9.21 37.16 0.34 -2.88 16 2 C -0.12 -1.97 4.22 -26.73 -0.11 -2.08 16 3 C 0.17 2.75 0.62 -131.81 -0.08 2.67 16 4 C -0.17 -2.35 7.72 37.16 0.29 -2.06 16 5 C -0.22 -3.19 6.83 37.16 0.25 -2.93 16 6 N -0.59 -12.42 2.08 -161.55 -0.34 -12.75 16 7 C 0.25 6.28 4.45 -5.19 -0.02 6.26 16 8 C -0.50 -14.00 5.82 -34.44 -0.20 -14.20 16 9 H 0.06 1.72 7.34 -52.49 -0.39 1.34 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 11 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 12 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 13 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 C 0.55 11.95 6.68 -12.66 -0.08 11.86 16 17 O -0.52 -13.75 15.05 5.27 0.08 -13.67 16 18 C -0.12 -2.00 3.34 -102.85 -0.34 -2.34 16 19 C -0.16 -2.08 7.09 36.01 0.26 -1.83 16 20 C -0.13 -1.94 6.25 -100.48 -0.63 -2.56 16 21 C -0.10 -1.58 7.53 -27.55 -0.21 -1.79 16 22 C -0.14 -1.59 8.17 -26.18 -0.21 -1.80 16 23 C -0.10 -1.11 7.48 -27.39 -0.20 -1.32 16 24 H 0.11 2.43 4.22 -51.93 -0.22 2.21 16 25 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.04 0.67 6.12 -51.93 -0.32 0.36 16 27 H 0.08 1.47 5.91 -51.93 -0.31 1.16 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.02 5.93 -51.93 -0.31 0.71 16 30 H 0.07 0.71 5.82 -51.93 -0.30 0.41 16 31 H 0.05 0.71 7.64 -51.93 -0.40 0.31 16 32 H 0.06 1.00 5.61 -51.93 -0.29 0.70 16 33 H 0.06 0.70 7.52 -51.93 -0.39 0.31 16 34 H 0.12 1.70 1.97 -101.77 -0.20 1.50 16 35 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 1.19 5.27 -51.93 -0.27 0.91 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 0.90 6.37 -51.93 -0.33 0.56 16 39 H 0.06 0.62 7.36 -51.93 -0.38 0.23 16 40 H 0.12 1.43 1.69 -53.64 -0.09 1.34 16 41 H 0.09 1.54 7.56 -51.93 -0.39 1.15 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -31.90 331.75 -7.70 -39.60 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.10 Total: 3.76 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.06 Total: -13.43 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.40 Total: -38.65 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.08 Total: -13.67 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.90 -7.70 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839327579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.634 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds