Wall clock time and date at job start Tue Mar 31 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47153 * 2 1 4 4 C 1.53007 * 109.46875 * 119.99670 * 2 1 3 5 5 N 1.46493 * 109.46995 * 65.00148 * 4 2 1 6 6 C 1.46498 * 120.00136 * 269.99873 * 5 4 2 7 7 C 1.50705 * 109.47067 * 270.00331 * 6 5 4 8 8 H 1.08001 * 120.00144 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99709 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99622 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00544 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47467 * 89.99486 * 11 9 7 13 13 H 1.48495 * 109.47309 * 210.00212 * 11 9 7 14 14 H 1.48503 * 109.46521 * 329.99860 * 11 9 7 15 15 C 1.34783 * 119.99896 * 90.00029 * 5 4 2 16 16 O 1.21612 * 119.99652 * 179.97438 * 15 5 4 17 17 C 1.47098 * 120.00090 * 359.97438 * 15 5 4 18 18 C 1.32993 * 119.99743 * 180.02562 * 17 15 5 19 19 C 1.50704 * 119.99690 * 179.97438 * 18 17 15 20 20 C 1.54892 * 110.59841 * 123.31679 * 19 18 17 21 21 C 1.54888 * 102.74611 * 156.67350 * 20 19 18 22 22 C 1.54265 * 104.19721 * 322.05788 * 21 20 19 23 23 C 1.53873 * 106.59997 * 23.61451 * 22 21 20 24 24 H 1.08996 * 109.46963 * 300.00495 * 1 2 3 25 25 H 1.09003 * 109.46812 * 59.99883 * 1 2 3 26 26 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47619 * 239.99858 * 2 1 3 28 28 H 1.09000 * 109.46863 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46876 * 299.99639 * 3 2 1 30 30 H 1.08996 * 109.47590 * 59.99889 * 3 2 1 31 31 H 1.08999 * 109.47384 * 304.99847 * 4 2 1 32 32 H 1.09004 * 109.46554 * 185.00381 * 4 2 1 33 33 H 1.08999 * 109.46934 * 29.99824 * 6 5 4 34 34 H 1.08994 * 109.47567 * 150.00149 * 6 5 4 35 35 H 0.96998 * 119.99800 * 180.02562 * 10 9 7 36 36 H 1.08001 * 119.99882 * 0.02562 * 17 15 5 37 37 H 1.08001 * 120.00374 * 359.97438 * 18 17 15 38 38 H 1.09002 * 110.43639 * 0.69971 * 19 18 17 39 39 H 1.08992 * 110.75663 * 274.99212 * 20 19 18 40 40 H 1.09000 * 110.75339 * 38.36236 * 20 19 18 41 41 H 1.09007 * 110.48520 * 203.37936 * 21 20 19 42 42 H 1.08996 * 110.48377 * 80.74349 * 21 20 19 43 43 H 1.08993 * 110.03585 * 264.31946 * 22 21 20 44 44 H 1.09006 * 110.07186 * 142.91875 * 22 21 20 45 45 H 1.09002 * 110.03017 * 240.71676 * 23 22 21 46 46 H 1.08992 * 110.03600 * 119.28231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6524 -2.1327 1.1907 6 6 0.3745 -2.5658 1.7614 7 6 0.5716 -2.9406 3.2077 8 1 1.5508 -2.8643 3.6568 9 6 -0.4984 -3.3810 3.9576 10 7 -0.3263 -3.7085 5.2197 11 14 -2.1920 -3.5137 3.1808 12 1 -2.3636 -4.8678 2.5958 13 1 -3.2311 -3.2868 4.2170 14 1 -2.3275 -2.4919 2.1117 15 6 2.4716 -3.0330 0.6118 16 8 2.1500 -4.2048 0.5635 17 6 3.7545 -2.5981 0.0383 18 6 4.5624 -3.4863 -0.5334 19 6 5.8765 -3.0407 -1.1214 20 6 7.0519 -3.8224 -0.4839 21 6 8.1597 -3.7120 -1.5607 22 6 7.4004 -3.8307 -2.8983 23 6 5.9487 -3.4038 -2.6190 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6054 -0.2617 2.1371 32 1 3.1263 -0.6442 1.2953 33 1 -0.3484 -1.7530 1.6919 34 1 0.0042 -3.4296 1.2094 35 1 -1.0790 -4.0187 5.7472 36 1 4.0402 -1.5574 0.0815 37 1 4.2769 -4.5270 -0.5763 38 1 6.0116 -1.9681 -0.9821 39 1 7.3693 -3.3517 0.4466 40 1 6.7776 -4.8641 -0.3172 41 1 8.8766 -4.5265 -1.4554 42 1 8.6636 -2.7479 -1.4922 43 1 7.4251 -4.8615 -3.2515 44 1 7.8472 -3.1708 -3.6419 45 1 5.2688 -4.2276 -2.8366 46 1 5.6912 -2.5362 -3.2264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843775942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:06 Heat of formation + Delta-G solvation = -46.985152 kcal Electronic energy + Delta-G solvation = -22276.809225 eV Core-core repulsion = 19165.675071 eV Total energy + Delta-G solvation = -3111.134155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.34614 -38.33003 -36.41557 -33.69311 -33.04683 -32.22281 -29.04525 -28.82277 -27.65197 -26.93483 -25.51885 -23.31085 -21.16318 -20.59415 -20.23404 -19.64339 -18.15561 -16.91389 -16.61130 -16.12972 -15.42731 -14.97688 -14.59899 -14.42916 -13.97934 -13.52914 -13.47019 -13.35721 -13.18563 -12.58839 -12.27777 -12.12686 -11.91426 -11.81451 -11.75093 -11.44646 -11.33307 -11.23442 -11.20133 -11.06268 -10.94764 -10.78508 -10.61443 -10.55711 -10.52954 -10.30296 -10.06280 -9.48899 -9.05525 -8.98832 -8.54799 -7.61049 -6.05242 -4.03139 1.77610 3.30959 3.36860 3.38819 3.88115 4.00468 4.42390 4.45762 4.54655 4.57437 4.98014 5.05494 5.13652 5.18655 5.27840 5.29503 5.30011 5.39522 5.47864 5.49437 5.51933 5.59798 5.71063 5.73916 5.76419 5.80182 5.84405 5.90859 6.04486 6.06010 6.11084 6.13873 6.16743 6.21380 6.24836 6.47151 6.56334 6.60205 6.69902 6.84778 7.01909 7.43492 7.66325 8.34209 8.51605 8.97869 9.07009 9.55483 11.08352 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.004389 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.647228 B = 6378.686147 C = 7354.145970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.585 5.585 6 C 0.213 3.787 7 C -0.526 4.526 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.537 3.463 16 O -0.547 6.547 17 C -0.202 4.202 18 C -0.077 4.077 19 C -0.068 4.068 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.117 4.117 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.583 7.595 -15.334 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.315 5.315 6 C 0.092 3.908 7 C -0.565 4.565 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.326 3.674 16 O -0.426 6.426 17 C -0.223 4.223 18 C -0.097 4.097 19 C -0.087 4.087 20 C -0.155 4.155 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.155 4.155 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.269 6.922 -15.171 20.703 hybrid contribution -0.975 -0.003 -0.122 0.982 sum 11.294 6.920 -15.293 20.232 Atomic orbital electron populations 1.21940 0.95005 1.02656 1.01110 1.21608 0.96820 0.95962 0.99057 1.21773 1.00633 0.95897 1.01782 1.21586 0.99515 0.81888 0.97865 1.47767 1.21018 1.06606 1.56064 1.19759 0.80749 0.95702 0.94591 1.21364 0.97397 1.44341 0.93385 0.90808 1.24852 0.98822 0.94647 0.94703 1.69904 1.31562 1.44926 1.07351 0.86875 0.84364 0.79329 0.79303 1.19943 1.21093 1.19004 1.18434 0.84514 0.85690 0.78805 1.90740 1.75350 1.17353 1.59199 1.22907 0.96035 1.00240 1.03121 1.23595 0.93139 1.00084 0.92845 1.21217 0.92447 1.00142 0.94861 1.22544 0.94044 1.00842 0.98029 1.22367 0.97598 1.01613 0.94666 1.22147 0.95282 1.01311 0.97498 1.22173 0.96786 1.01515 0.94993 0.92469 0.93451 0.91732 0.91342 0.92842 0.92844 0.92441 0.89836 0.91202 0.94599 0.94804 0.92634 0.86059 0.85771 0.90168 0.91236 0.90922 0.91677 0.91685 0.91853 0.91998 0.91295 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.18 37.16 0.30 -1.87 16 2 C -0.11 -1.54 3.13 -90.61 -0.28 -1.83 16 3 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 4 C 0.12 1.88 4.61 -4.04 -0.02 1.86 16 5 N -0.59 -12.31 2.28 -176.46 -0.40 -12.72 16 6 C 0.21 5.27 3.30 -5.19 -0.02 5.25 16 7 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16 8 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 11 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 12 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 15 C 0.54 11.45 7.62 -12.66 -0.10 11.35 16 16 O -0.55 -14.02 15.80 5.27 0.08 -13.93 16 17 C -0.20 -3.21 8.83 -37.81 -0.33 -3.54 16 18 C -0.08 -1.09 8.27 -36.12 -0.30 -1.38 16 19 C -0.07 -0.72 3.18 -90.11 -0.29 -1.01 16 20 C -0.12 -1.15 6.32 -24.74 -0.16 -1.30 16 21 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 22 C -0.12 -1.00 6.80 -25.61 -0.17 -1.18 16 23 C -0.12 -1.10 6.36 -25.61 -0.16 -1.26 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.10 5.89 -51.93 -0.31 0.79 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 32 H 0.07 0.99 6.10 -51.93 -0.32 0.67 16 33 H 0.04 0.84 5.03 -51.93 -0.26 0.58 16 34 H 0.03 0.91 6.85 -51.93 -0.36 0.55 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.12 1.59 6.06 -52.49 -0.32 1.27 16 37 H 0.12 1.96 7.49 -52.49 -0.39 1.57 16 38 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 41 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -33.62 361.62 -8.83 -42.45 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.27 Total: -0.17 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.79 Total: -10.96 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.37 Total: -40.04 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.93 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.62 -8.83 -42.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843775942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.536 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds