Wall clock time and date at job start Tue Mar 31 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47153 * 2 1 4 4 C 1.53007 * 109.46875 * 119.99670 * 2 1 3 5 5 N 1.46493 * 109.46995 * 65.00148 * 4 2 1 6 6 C 1.46498 * 120.00136 * 269.99873 * 5 4 2 7 7 C 1.50705 * 109.47067 * 270.00331 * 6 5 4 8 8 H 1.08001 * 120.00144 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99709 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99622 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00544 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47467 * 89.99486 * 11 9 7 13 13 H 1.48495 * 109.47309 * 210.00212 * 11 9 7 14 14 H 1.48503 * 109.46521 * 329.99860 * 11 9 7 15 15 C 1.34783 * 119.99896 * 90.00029 * 5 4 2 16 16 O 1.21612 * 119.99652 * 179.97438 * 15 5 4 17 17 C 1.47098 * 120.00090 * 359.97438 * 15 5 4 18 18 C 1.32993 * 119.99743 * 180.02562 * 17 15 5 19 19 C 1.50704 * 119.99690 * 179.97438 * 18 17 15 20 20 C 1.54892 * 110.59841 * 123.31679 * 19 18 17 21 21 C 1.54888 * 102.74611 * 156.67350 * 20 19 18 22 22 C 1.54265 * 104.19721 * 322.05788 * 21 20 19 23 23 C 1.53873 * 106.59997 * 23.61451 * 22 21 20 24 24 H 1.08996 * 109.46963 * 300.00495 * 1 2 3 25 25 H 1.09003 * 109.46812 * 59.99883 * 1 2 3 26 26 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47619 * 239.99858 * 2 1 3 28 28 H 1.09000 * 109.46863 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46876 * 299.99639 * 3 2 1 30 30 H 1.08996 * 109.47590 * 59.99889 * 3 2 1 31 31 H 1.08999 * 109.47384 * 304.99847 * 4 2 1 32 32 H 1.09004 * 109.46554 * 185.00381 * 4 2 1 33 33 H 1.08999 * 109.46934 * 29.99824 * 6 5 4 34 34 H 1.08994 * 109.47567 * 150.00149 * 6 5 4 35 35 H 0.96998 * 119.99800 * 180.02562 * 10 9 7 36 36 H 1.08001 * 119.99882 * 0.02562 * 17 15 5 37 37 H 1.08001 * 120.00374 * 359.97438 * 18 17 15 38 38 H 1.09002 * 110.43639 * 0.69971 * 19 18 17 39 39 H 1.08992 * 110.75663 * 274.99212 * 20 19 18 40 40 H 1.09000 * 110.75339 * 38.36236 * 20 19 18 41 41 H 1.09007 * 110.48520 * 203.37936 * 21 20 19 42 42 H 1.08996 * 110.48377 * 80.74349 * 21 20 19 43 43 H 1.08993 * 110.03585 * 264.31946 * 22 21 20 44 44 H 1.09006 * 110.07186 * 142.91875 * 22 21 20 45 45 H 1.09002 * 110.03017 * 240.71676 * 23 22 21 46 46 H 1.08992 * 110.03600 * 119.28231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6524 -2.1327 1.1907 6 6 0.3745 -2.5658 1.7614 7 6 0.5716 -2.9406 3.2077 8 1 1.5508 -2.8643 3.6568 9 6 -0.4984 -3.3810 3.9576 10 7 -0.3263 -3.7085 5.2197 11 14 -2.1920 -3.5137 3.1808 12 1 -2.3636 -4.8678 2.5958 13 1 -3.2311 -3.2868 4.2170 14 1 -2.3275 -2.4919 2.1117 15 6 2.4716 -3.0330 0.6118 16 8 2.1500 -4.2048 0.5635 17 6 3.7545 -2.5981 0.0383 18 6 4.5624 -3.4863 -0.5334 19 6 5.8765 -3.0407 -1.1214 20 6 7.0519 -3.8224 -0.4839 21 6 8.1597 -3.7120 -1.5607 22 6 7.4004 -3.8307 -2.8983 23 6 5.9487 -3.4038 -2.6190 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6054 -0.2617 2.1371 32 1 3.1263 -0.6442 1.2953 33 1 -0.3484 -1.7530 1.6919 34 1 0.0042 -3.4296 1.2094 35 1 -1.0790 -4.0187 5.7472 36 1 4.0402 -1.5574 0.0815 37 1 4.2769 -4.5270 -0.5763 38 1 6.0116 -1.9681 -0.9821 39 1 7.3693 -3.3517 0.4466 40 1 6.7776 -4.8641 -0.3172 41 1 8.8766 -4.5265 -1.4554 42 1 8.6636 -2.7479 -1.4922 43 1 7.4251 -4.8615 -3.2515 44 1 7.8472 -3.1708 -3.6419 45 1 5.2688 -4.2276 -2.8366 46 1 5.6912 -2.5362 -3.2264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843775942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:06 Heat of formation + Delta-G solvation = -66.367871 kcal Electronic energy + Delta-G solvation = -22277.649723 eV Core-core repulsion = 19165.675071 eV Total energy + Delta-G solvation = -3111.974652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91948 -39.18793 -37.84890 -35.41542 -34.27784 -34.15921 -30.74007 -29.53638 -28.86841 -27.98233 -26.92469 -25.05642 -22.62327 -21.40735 -21.26036 -20.61505 -19.62318 -19.14946 -18.05051 -17.46673 -16.55215 -16.31265 -15.94148 -15.81474 -15.49448 -14.94531 -14.72976 -14.36146 -14.31954 -14.24475 -13.78954 -13.61377 -13.17335 -13.02866 -12.94117 -12.68869 -12.59391 -12.43184 -12.24901 -12.15486 -12.00121 -11.97412 -11.91475 -11.78476 -11.58617 -11.57254 -11.53707 -11.24472 -10.84143 -10.69469 -10.27945 -9.34170 -8.36233 -6.40733 0.46300 1.28856 1.33243 1.41694 2.28179 2.30863 2.46213 2.97863 3.53606 3.76010 3.81565 3.88880 4.03296 4.04235 4.13270 4.26398 4.46475 4.57095 4.59459 4.63372 4.67623 4.70128 4.70506 4.72545 4.86896 4.87791 4.89360 4.94791 4.99635 5.07688 5.11102 5.14040 5.24117 5.28111 5.31951 5.34864 5.42356 5.43269 5.49339 5.52613 5.54240 5.59605 5.71072 6.23454 6.60027 6.72384 7.19423 7.41975 8.80999 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.004389 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.647228 B = 6378.686147 C = 7354.145970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.136 4.136 4 C 0.109 3.891 5 N -0.590 5.590 6 C 0.226 3.774 7 C -0.537 4.537 8 H 0.027 0.973 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.271 1.271 14 H -0.238 1.238 15 C 0.524 3.476 16 O -0.607 6.607 17 C -0.216 4.216 18 C -0.052 4.052 19 C -0.065 4.065 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.117 4.117 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.011 0.989 35 H 0.269 0.731 36 H 0.158 0.842 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.523 9.995 -17.782 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.194 4.194 4 C -0.013 4.013 5 N -0.319 5.319 6 C 0.103 3.897 7 C -0.575 4.575 8 H 0.045 0.955 9 C -0.186 4.186 10 N -0.585 5.585 11 Si 0.767 3.233 12 H -0.203 1.203 13 H -0.196 1.196 14 H -0.161 1.161 15 C 0.315 3.685 16 O -0.491 6.491 17 C -0.236 4.236 18 C -0.072 4.072 19 C -0.083 4.083 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.160 4.160 23 C -0.155 4.155 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.175 0.825 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.236 9.382 -17.630 23.959 hybrid contribution -1.156 -0.816 0.680 1.570 sum 12.080 8.567 -16.950 22.508 Atomic orbital electron populations 1.21953 0.95942 1.00877 1.02192 1.21536 0.96014 0.97713 0.97283 1.21730 1.01764 0.93316 1.02588 1.21917 1.01153 0.79180 0.99089 1.47854 1.19809 1.08816 1.55388 1.19393 0.83307 0.95460 0.91516 1.21596 0.95542 1.44684 0.95729 0.95505 1.25831 1.03661 0.93964 0.95116 1.70052 1.33277 1.46059 1.09092 0.85763 0.78554 0.79749 0.79242 1.20260 1.19602 1.16148 1.19391 0.85989 0.84921 0.78150 1.90695 1.76882 1.19801 1.61714 1.22767 0.93793 1.02233 1.04855 1.23831 0.94216 0.98647 0.90542 1.21307 0.90127 1.01337 0.95542 1.22583 0.94484 0.99936 0.98924 1.22358 0.97020 1.02658 0.93663 1.22150 0.94237 1.01741 0.97898 1.22191 0.97634 1.01663 0.93982 0.92751 0.91051 0.94824 0.90941 0.91062 0.91225 0.92471 0.91164 0.88689 0.92639 0.97066 0.92233 0.82501 0.88303 0.88113 0.90998 0.92294 0.91008 0.90370 0.91866 0.90384 0.92614 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 8.18 71.98 0.59 -3.56 16 2 C -0.11 -2.59 3.13 -10.79 -0.03 -2.63 16 3 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 4 C 0.11 3.43 4.61 86.38 0.40 3.83 16 5 N -0.59 -25.37 2.28 -830.44 -1.89 -27.26 16 6 C 0.23 11.51 3.30 85.64 0.28 11.79 16 7 C -0.54 -32.86 9.94 25.60 0.25 -32.61 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C 0.01 0.74 5.47 84.65 0.46 1.21 16 10 N -0.94 -61.13 13.96 21.45 0.30 -60.83 16 11 Si 0.94 45.80 27.47 68.60 1.88 47.68 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 14 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 15 C 0.52 23.02 7.62 86.57 0.66 23.68 16 16 O -0.61 -32.88 15.80 -4.07 -0.06 -32.94 16 17 C -0.22 -6.70 8.83 23.43 0.21 -6.49 16 18 C -0.05 -1.45 8.27 24.52 0.20 -1.25 16 19 C -0.06 -1.22 3.18 -10.46 -0.03 -1.26 16 20 C -0.12 -2.18 6.32 31.89 0.20 -1.98 16 21 C -0.12 -1.59 6.83 31.67 0.22 -1.37 16 22 C -0.12 -1.62 6.80 31.32 0.21 -1.41 16 23 C -0.12 -1.91 6.36 31.32 0.20 -1.72 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.03 1.11 5.89 -2.39 -0.01 1.09 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 32 H 0.09 2.48 6.10 -2.38 -0.01 2.47 16 33 H 0.06 2.61 5.03 -2.39 -0.01 2.59 16 34 H 0.01 0.62 6.85 -2.39 -0.02 0.61 16 35 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 36 H 0.16 3.64 6.06 -2.91 -0.02 3.62 16 37 H 0.10 3.27 7.49 -2.91 -0.02 3.25 16 38 H 0.10 1.57 7.87 -2.39 -0.02 1.55 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.20 8.05 -2.39 -0.02 1.18 16 41 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.05 1.06 7.83 -2.39 -0.02 1.04 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -78.44 361.62 5.57 -72.87 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.86 Total: 15.92 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 4.48 Total: -15.43 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.59 Total: -88.10 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.06 Total: -32.94 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -78.44 5.57 -72.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843775942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.500 kcal (2) G-P(sol) polarization free energy of solvation -78.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds