Wall clock time and date at job start Tue Mar 31 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47720 * 2 1 4 4 C 1.53008 * 109.46998 * 120.00116 * 2 1 3 5 5 N 1.46498 * 109.47381 * 174.99547 * 4 2 1 6 6 C 1.46503 * 119.99541 * 89.99933 * 5 4 2 7 7 C 1.50701 * 109.46853 * 90.00373 * 6 5 4 8 8 H 1.07997 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99597 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00424 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99836 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46763 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47210 * 120.00107 * 11 9 7 14 14 H 1.48495 * 109.47309 * 240.00022 * 11 9 7 15 15 C 1.34773 * 120.00251 * 270.00414 * 5 4 2 16 16 O 1.21610 * 120.00356 * 180.02562 * 15 5 4 17 17 C 1.47102 * 119.99964 * 359.97438 * 15 5 4 18 18 C 1.32993 * 120.00256 * 186.57364 * 17 15 5 19 19 C 1.50701 * 119.99889 * 17.80088 * 18 17 15 20 20 C 1.54269 * 110.02995 * 251.04765 * 19 18 17 21 21 C 1.54887 * 104.19330 * 217.10306 * 20 19 18 22 22 C 1.54889 * 102.75119 * 37.94132 * 21 20 19 23 23 C 1.53874 * 110.03570 * 133.88014 * 19 18 17 24 24 H 1.09000 * 109.47290 * 300.00816 * 1 2 3 25 25 H 1.09007 * 109.47002 * 59.99860 * 1 2 3 26 26 H 1.08994 * 109.47469 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47304 * 239.99494 * 2 1 3 28 28 H 1.08993 * 109.47200 * 300.00146 * 3 2 1 29 29 H 1.09002 * 109.46789 * 59.99963 * 3 2 1 30 30 H 1.08994 * 109.47151 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46681 * 54.99354 * 4 2 1 32 32 H 1.08997 * 109.47056 * 295.00023 * 4 2 1 33 33 H 1.09003 * 109.46653 * 210.00102 * 6 5 4 34 34 H 1.08990 * 109.47383 * 329.99855 * 6 5 4 35 35 H 0.96998 * 120.00118 * 179.97438 * 10 9 7 36 36 H 1.07999 * 120.00338 * 6.58128 * 17 15 5 37 37 H 1.08004 * 120.00395 * 197.79814 * 18 17 15 38 38 H 1.09002 * 110.01770 * 12.48508 * 19 18 17 39 39 H 1.09004 * 110.48798 * 335.77802 * 20 19 18 40 40 H 1.08998 * 110.49188 * 98.42272 * 20 19 18 41 41 H 1.09001 * 110.76161 * 279.62483 * 21 20 19 42 42 H 1.09004 * 110.75586 * 156.25693 * 21 20 19 43 43 H 1.08999 * 110.49008 * 203.37862 * 22 21 20 44 44 H 1.09003 * 110.59666 * 80.78775 * 22 21 20 45 45 H 1.08998 * 110.02688 * 238.57164 * 23 19 18 46 46 H 1.08998 * 110.02563 * 359.94787 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8266 1.1907 6 6 4.3342 0.2339 1.7614 7 6 4.6219 -0.0770 3.2077 8 1 4.2229 -0.9744 3.6568 9 6 5.3946 0.7844 3.9573 10 7 5.8810 1.8770 3.4102 11 14 5.7507 0.3995 5.7502 12 1 5.0936 -0.8793 6.1219 13 1 7.2174 0.2779 5.9486 14 1 5.2247 1.4937 6.6053 15 6 4.0756 -1.8988 0.6116 16 8 5.2876 -1.9865 0.5634 17 6 3.2378 -2.9638 0.0390 18 6 3.7998 -4.0807 -0.4143 19 6 5.2016 -4.4425 0.0042 20 6 6.1687 -4.2730 -1.1857 21 6 7.1696 -5.4448 -1.0315 22 6 6.2663 -6.6039 -0.5419 23 6 5.2637 -5.9245 0.4135 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1300 1.4423 0.0005 31 1 1.6052 -1.7198 1.2952 32 1 1.7516 -0.1584 2.1370 33 1 5.2721 0.2950 1.2093 34 1 3.8091 1.1864 1.6919 35 1 6.4243 2.4831 3.9377 36 1 2.1664 -2.8387 -0.0135 37 1 3.2516 -4.7285 -1.0823 38 1 5.5172 -3.8120 0.8355 39 1 5.6297 -4.3534 -2.1298 40 1 6.6880 -3.3168 -1.1222 41 1 7.9306 -5.2077 -0.2879 42 1 7.6277 -5.6903 -1.9897 43 1 6.8569 -7.3487 -0.0085 44 1 5.7429 -7.0627 -1.3808 45 1 5.6102 -6.0132 1.4431 46 1 4.2797 -6.3818 0.3103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843775943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:10 Heat of formation + Delta-G solvation = -39.813243 kcal Electronic energy + Delta-G solvation = -22749.186140 eV Core-core repulsion = 19638.362983 eV Total energy + Delta-G solvation = -3110.823157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.44014 -37.88642 -36.25003 -33.62741 -32.73945 -32.21570 -28.50919 -28.40299 -27.22634 -26.79519 -25.38212 -23.47043 -21.11209 -20.45318 -20.11536 -19.70597 -17.80160 -16.55614 -16.34342 -15.72849 -15.22178 -14.79210 -14.47891 -14.36517 -13.83120 -13.34824 -13.16371 -13.13064 -12.97746 -12.52871 -12.25248 -12.04088 -12.02204 -11.51642 -11.41661 -11.29861 -10.99651 -10.98135 -10.90353 -10.80939 -10.68782 -10.52555 -10.47998 -10.44279 -10.27555 -10.21194 -9.99063 -9.51822 -8.87919 -8.48899 -8.39151 -7.50618 -6.00720 -4.04704 1.80920 3.31105 3.38803 3.42951 4.04427 4.09773 4.48494 4.84017 4.89386 4.92275 5.09380 5.18097 5.23832 5.32512 5.34060 5.44868 5.63436 5.68753 5.78598 5.80274 5.80716 5.87892 5.91573 5.92785 5.94254 6.03883 6.08669 6.13510 6.21187 6.22705 6.25249 6.35058 6.45815 6.57657 6.59901 6.65982 6.68045 6.74003 7.03535 7.23198 7.51385 7.65054 7.96902 8.29485 8.54293 8.95934 9.21191 9.60330 11.07001 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.006080 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.663292 B = 4604.125910 C = 6376.177829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.117 3.883 5 N -0.591 5.591 6 C 0.242 3.758 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.533 3.467 16 O -0.535 6.535 17 C -0.216 4.216 18 C -0.070 4.070 19 C -0.085 4.085 20 C -0.104 4.104 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.119 4.119 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 -10.742 -9.092 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.205 4.205 4 C -0.008 4.008 5 N -0.321 5.321 6 C 0.123 3.877 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.323 3.677 16 O -0.416 6.416 17 C -0.237 4.237 18 C -0.089 4.089 19 C -0.103 4.103 20 C -0.141 4.141 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.157 4.157 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.995 -10.580 -9.041 15.576 hybrid contribution -0.064 -0.088 1.026 1.031 sum -7.059 -10.668 -8.015 15.096 Atomic orbital electron populations 1.21779 0.95321 1.01277 1.01714 1.21600 0.95148 0.97632 0.99017 1.21920 1.02661 0.95072 1.00864 1.21536 0.81578 0.99936 0.97749 1.48126 1.05968 1.22253 1.55737 1.19378 0.90600 0.84542 0.93167 1.21496 1.31703 1.07325 0.95576 0.92549 1.24916 0.95590 0.95023 0.98563 1.69941 1.35015 1.12064 1.36445 0.86490 0.78154 0.78185 0.84879 1.19853 1.20939 1.21021 1.18429 0.87844 0.82760 0.78705 1.90659 1.14328 1.77632 1.58934 1.22955 0.99717 0.96161 1.04861 1.23619 0.96661 0.95063 0.93595 1.21411 0.92108 0.95989 1.00815 1.22218 0.96121 0.98895 0.96888 1.22517 0.97883 0.95403 1.00552 1.22357 0.97398 0.97539 0.98783 1.22249 0.98862 0.95211 0.99338 0.92529 0.92907 0.92998 0.91501 0.93713 0.92579 0.91273 0.91659 0.90149 0.94076 0.94309 0.92868 0.86080 0.86824 0.86452 0.92635 0.90650 0.91477 0.92136 0.92210 0.92114 0.91856 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 37.15 0.34 -1.24 16 2 C -0.11 -1.61 3.13 -90.62 -0.28 -1.90 16 3 C -0.15 -2.31 8.18 37.16 0.30 -2.00 16 4 C 0.12 1.93 4.57 -4.04 -0.02 1.91 16 5 N -0.59 -12.49 2.28 -176.46 -0.40 -12.89 16 6 C 0.24 6.26 4.23 -5.19 -0.02 6.24 16 7 C -0.52 -14.81 9.39 -34.44 -0.32 -15.13 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 11 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.53 11.16 7.38 -12.67 -0.09 11.06 16 16 O -0.54 -13.00 12.42 5.27 0.07 -12.93 16 17 C -0.22 -3.44 9.11 -37.81 -0.34 -3.79 16 18 C -0.07 -0.99 8.44 -36.13 -0.30 -1.30 16 19 C -0.09 -1.32 2.33 -90.65 -0.21 -1.54 16 20 C -0.10 -1.52 6.16 -25.07 -0.15 -1.67 16 21 C -0.13 -1.57 6.91 -24.74 -0.17 -1.74 16 22 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 23 C -0.12 -1.52 6.45 -25.62 -0.17 -1.69 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.28 5.89 -51.93 -0.31 0.98 16 31 H 0.07 0.94 6.19 -51.93 -0.32 0.62 16 32 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 33 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 34 H 0.04 1.01 5.98 -51.93 -0.31 0.70 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.12 1.60 6.35 -52.49 -0.33 1.27 16 37 H 0.11 1.28 8.06 -52.48 -0.42 0.85 16 38 H 0.12 2.33 5.36 -51.93 -0.28 2.05 16 39 H 0.05 0.74 7.85 -51.93 -0.41 0.33 16 40 H 0.07 1.30 7.67 -51.93 -0.40 0.90 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -31.11 358.79 -9.10 -40.22 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.18 Total: 1.77 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.71 Total: -12.69 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.33 Total: -38.77 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.11 -9.10 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843775943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.403 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds