Wall clock time and date at job start Tue Mar 31 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47595 * 2 1 4 4 C 1.53006 * 109.47257 * 120.00089 * 2 1 3 5 5 N 1.46504 * 109.47046 * 64.99657 * 4 2 1 6 6 C 1.46488 * 120.00228 * 270.00223 * 5 4 2 7 7 C 1.50701 * 109.47399 * 270.00119 * 6 5 4 8 8 H 1.07998 * 119.99484 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00181 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99868 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00127 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46580 * 90.00305 * 11 9 7 13 13 H 1.48492 * 109.47054 * 210.00280 * 11 9 7 14 14 H 1.48502 * 109.47128 * 330.00469 * 11 9 7 15 15 C 1.34786 * 119.99737 * 90.00302 * 5 4 2 16 16 O 1.21282 * 119.99497 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00032 * 359.97438 * 15 5 4 18 18 H 1.09003 * 115.55886 * 34.31100 * 17 15 5 19 19 C 1.53070 * 117.49728 * 248.60523 * 17 15 5 20 20 C 1.53001 * 117.50034 * 179.97438 * 17 15 5 21 21 H 1.09002 * 117.49542 * 359.97438 * 20 17 15 22 22 C 1.52995 * 117.50090 * 214.98299 * 20 17 15 23 23 C 1.53785 * 113.69093 * 81.02377 * 22 20 17 24 24 C 1.53779 * 87.08093 * 139.99088 * 23 22 20 25 25 C 1.53781 * 113.61293 * 178.56002 * 22 20 17 26 26 H 1.09002 * 109.46855 * 299.99911 * 1 2 3 27 27 H 1.08995 * 109.47526 * 59.99852 * 1 2 3 28 28 H 1.09008 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47287 * 239.99873 * 2 1 3 30 30 H 1.08993 * 109.47252 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46804 * 300.00590 * 3 2 1 32 32 H 1.08998 * 109.46907 * 59.99640 * 3 2 1 33 33 H 1.09003 * 109.47300 * 305.00145 * 4 2 1 34 34 H 1.08994 * 109.47237 * 184.99464 * 4 2 1 35 35 H 1.09002 * 109.47411 * 30.00000 * 6 5 4 36 36 H 1.09004 * 109.47310 * 149.99908 * 6 5 4 37 37 H 0.96998 * 120.00057 * 179.97438 * 10 9 7 38 38 H 1.08998 * 117.51891 * 145.03770 * 19 17 15 39 39 H 1.09006 * 117.51102 * 359.97438 * 19 17 15 40 40 H 1.09002 * 112.85043 * 309.75261 * 22 20 17 41 41 H 1.09003 * 113.60734 * 254.54208 * 23 22 20 42 42 H 1.08996 * 113.61146 * 25.43706 * 23 22 20 43 43 H 1.08994 * 113.61314 * 220.01752 * 24 23 22 44 44 H 1.09003 * 113.61186 * 89.11185 * 24 23 22 45 45 H 1.09005 * 113.61302 * 334.47929 * 25 22 20 46 46 H 1.08996 * 113.61527 * 105.30092 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6523 -2.1329 1.1906 6 6 0.3745 -2.5659 1.7612 7 6 0.5715 -2.9408 3.2075 8 1 1.5508 -2.8646 3.6565 9 6 -0.4982 -3.3822 3.9572 10 7 -0.3263 -3.7089 5.2195 11 14 -2.1918 -3.5148 3.1803 12 1 -2.3629 -4.8686 2.5944 13 1 -3.2308 -3.2891 4.2169 14 1 -2.3278 -2.4923 2.1121 15 6 2.4715 -3.0332 0.6116 16 8 2.1503 -4.2017 0.5626 17 6 3.7857 -2.5876 0.0240 18 1 4.2828 -1.7716 0.5486 19 6 3.9347 -2.6441 -1.4984 20 6 4.6711 -3.6571 -0.6186 21 1 4.3032 -4.6832 -0.6160 22 6 6.1862 -3.4991 -0.4761 23 6 6.7339 -3.9872 0.8755 24 6 7.9241 -4.5685 0.0942 25 6 6.9882 -4.6401 -1.1240 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6053 -0.2618 2.1370 34 1 3.1262 -0.6445 1.2951 35 1 -0.3485 -1.7532 1.6919 36 1 0.0042 -3.4298 1.2092 37 1 -1.0789 -4.0191 5.7470 38 1 4.5298 -1.8655 -1.9754 39 1 3.0823 -3.0040 -2.0747 40 1 6.5364 -2.5056 -0.7561 41 1 7.0092 -3.1785 1.5526 42 1 6.1114 -4.7452 1.3508 43 1 8.2476 -5.5451 0.4543 44 1 8.7493 -3.8673 -0.0299 45 1 6.4352 -5.5768 -1.1953 46 1 7.4675 -4.3592 -2.0617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845310082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:44 Heat of formation + Delta-G solvation = -25.811688 kcal Electronic energy + Delta-G solvation = -22749.980788 eV Core-core repulsion = 19639.764783 eV Total energy + Delta-G solvation = -3110.216004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26791 -39.75298 -37.90130 -36.60623 -35.28454 -34.18181 -30.63986 -27.98003 -27.38892 -26.84503 -26.44618 -25.50639 -23.24250 -21.98081 -21.33725 -20.36021 -19.56220 -19.16243 -18.10744 -17.40804 -16.44981 -16.37208 -16.03484 -15.80227 -15.52615 -14.98996 -14.72773 -14.39281 -14.16319 -13.81997 -13.66749 -13.48168 -13.30167 -13.18097 -13.14783 -12.98282 -12.75001 -12.60886 -12.46149 -12.16236 -12.00576 -11.87775 -11.79468 -11.60339 -11.54889 -11.45852 -11.37464 -10.85635 -10.78862 -10.71362 -10.55817 -9.36442 -8.37035 -6.41472 1.27833 1.32115 1.40581 1.66060 2.26734 2.28194 2.87278 2.97107 3.51527 3.69243 3.75302 3.91064 3.95505 4.01000 4.05345 4.13728 4.23940 4.27720 4.32617 4.47307 4.64619 4.67810 4.73952 4.79845 4.87100 4.89745 4.89977 4.92292 4.92836 4.96883 5.07210 5.10416 5.12636 5.14021 5.14711 5.28989 5.29450 5.42051 5.43226 5.45201 5.53072 5.68844 5.70233 6.22339 6.59285 6.72152 7.18967 7.43588 8.80236 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.005317 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.444593 B = 5265.309350 C = 6438.683419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.111 3.889 5 N -0.591 5.591 6 C 0.226 3.774 7 C -0.536 4.536 8 H 0.026 0.974 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.271 1.271 14 H -0.238 1.238 15 C 0.524 3.476 16 O -0.603 6.603 17 C -0.189 4.189 18 H 0.141 0.859 19 C -0.120 4.120 20 C -0.116 4.116 21 H 0.080 0.920 22 C -0.072 4.072 23 C -0.148 4.148 24 C -0.135 4.135 25 C -0.130 4.130 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.010 0.990 37 H 0.269 0.731 38 H 0.142 0.858 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 10.011 -16.521 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 C -0.193 4.193 4 C -0.011 4.011 5 N -0.320 5.320 6 C 0.104 3.896 7 C -0.575 4.575 8 H 0.044 0.956 9 C -0.186 4.186 10 N -0.585 5.585 11 Si 0.767 3.233 12 H -0.203 1.203 13 H -0.196 1.196 14 H -0.162 1.162 15 C 0.314 3.686 16 O -0.485 6.485 17 C -0.210 4.210 18 H 0.159 0.841 19 C -0.157 4.157 20 C -0.135 4.135 21 H 0.099 0.901 22 C -0.090 4.090 23 C -0.186 4.186 24 C -0.172 4.172 25 C -0.167 4.167 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.078 0.922 38 H 0.160 0.840 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.086 0.914 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.311 9.381 -16.364 22.524 hybrid contribution -1.245 -0.848 0.887 1.748 sum 11.066 8.533 -15.477 20.852 Atomic orbital electron populations 1.21956 0.96094 1.00808 1.02113 1.21501 0.95776 0.97628 0.97407 1.21719 1.01750 0.93396 1.02484 1.21882 1.01002 0.79240 0.99016 1.47880 1.19693 1.08808 1.55597 1.19380 0.83386 0.95378 0.91480 1.21588 0.95490 1.44601 0.95772 0.95581 1.25828 1.03645 0.93981 0.95112 1.70050 1.33271 1.46099 1.09084 0.85770 0.78603 0.79722 0.79246 1.20291 1.19610 1.16150 1.20451 0.85864 0.84774 0.77532 1.90609 1.76609 1.20039 1.61218 1.22234 0.94686 1.05045 0.99022 0.84113 1.23124 1.02190 1.01817 0.88560 1.22357 0.93815 0.94759 1.02531 0.90137 1.22208 0.89580 1.00473 0.96764 1.22936 0.98171 1.00642 0.96848 1.22825 0.96587 1.01529 0.96246 1.22887 0.97420 0.98006 0.98392 0.92940 0.91032 0.94868 0.90598 0.91084 0.91203 0.92690 0.91504 0.88883 0.92722 0.97176 0.92248 0.84019 0.89700 0.86567 0.91160 0.92826 0.91696 0.88293 0.91403 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 8.18 71.98 0.59 -3.51 16 2 C -0.10 -2.49 3.13 -10.79 -0.03 -2.52 16 3 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 4 C 0.11 3.46 4.73 86.38 0.41 3.87 16 5 N -0.59 -25.04 2.28 -826.14 -1.88 -26.92 16 6 C 0.23 11.47 3.30 85.64 0.28 11.76 16 7 C -0.54 -32.73 9.94 25.60 0.25 -32.48 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 9 C 0.01 0.75 5.47 84.65 0.46 1.21 16 10 N -0.94 -61.20 13.96 21.45 0.30 -60.90 16 11 Si 0.94 45.80 27.47 68.60 1.88 47.69 16 12 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 15 C 0.52 22.50 7.46 87.66 0.65 23.16 16 16 O -0.60 -32.26 15.84 -3.04 -0.05 -32.31 16 17 C -0.19 -5.56 5.01 -11.52 -0.06 -5.62 16 18 H 0.14 3.45 6.44 -2.39 -0.02 3.43 16 19 C -0.12 -2.64 9.95 30.64 0.30 -2.34 16 20 C -0.12 -3.09 4.93 -10.78 -0.05 -3.15 16 21 H 0.08 2.74 7.65 -2.39 -0.02 2.72 16 22 C -0.07 -1.43 3.81 -10.27 -0.04 -1.47 16 23 C -0.15 -3.35 7.65 31.12 0.24 -3.11 16 24 C -0.13 -2.31 8.08 31.12 0.25 -2.05 16 25 C -0.13 -2.29 7.64 31.12 0.24 -2.06 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 1.08 5.90 -2.38 -0.01 1.07 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 34 H 0.09 2.42 5.99 -2.39 -0.01 2.40 16 35 H 0.06 2.56 5.04 -2.39 -0.01 2.55 16 36 H 0.01 0.56 6.85 -2.38 -0.02 0.55 16 37 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 38 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.12 1.71 8.12 -2.39 -0.02 1.69 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.07 1.39 8.09 -2.38 -0.02 1.37 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -78.81 363.09 5.28 -73.52 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.87 Total: 18.85 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 4.16 Total: -19.93 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -1.59 Total: -87.82 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.05 Total: -32.31 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.69 kcal Total: -78.81 5.28 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845310082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.713 kcal (2) G-P(sol) polarization free energy of solvation -78.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds