Wall clock time and date at job start Tue Mar 31 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32994 * 119.99891 * 2 1 4 4 C 1.50707 * 119.99701 * 186.80269 * 3 2 1 5 5 C 1.53000 * 109.46984 * 63.93702 * 4 3 2 6 6 C 1.53000 * 109.47034 * 303.93659 * 4 3 2 7 7 C 1.53004 * 109.46926 * 183.93790 * 4 3 2 8 8 C 1.47099 * 119.99854 * 179.97438 * 2 1 3 9 9 O 1.21616 * 119.99807 * 87.95668 * 8 2 1 10 10 N 1.34773 * 120.00130 * 267.95203 * 8 2 1 11 11 C 1.46931 * 120.63381 * 4.25167 * 10 8 2 12 12 C 1.53617 * 108.54313 * 126.36523 * 11 10 8 13 13 C 1.53044 * 109.24205 * 54.86094 * 12 11 10 14 14 C 1.53038 * 109.53494 * 298.50635 * 13 12 11 15 15 H 1.09001 * 109.49954 * 301.41302 * 14 13 12 16 16 C 1.50702 * 109.52418 * 181.33316 * 14 13 12 17 17 H 1.08005 * 119.99799 * 0.14961 * 16 14 13 18 18 C 1.37879 * 120.00317 * 180.14500 * 16 14 13 19 19 N 1.31514 * 119.99531 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00084 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47275 * 60.00025 * 20 18 16 22 22 H 1.48499 * 109.47095 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46974 * 300.00007 * 20 18 16 24 24 C 1.46930 * 120.63089 * 184.52966 * 10 8 2 25 25 H 1.09007 * 109.47175 * 94.83698 * 1 2 3 26 26 H 1.08996 * 109.47467 * 214.83737 * 1 2 3 27 27 H 1.09000 * 109.47421 * 334.84080 * 1 2 3 28 28 H 1.07999 * 120.00324 * 6.79838 * 3 2 1 29 29 H 1.08999 * 109.47135 * 46.55708 * 5 4 3 30 30 H 1.08999 * 109.47087 * 286.55731 * 5 4 3 31 31 H 1.09005 * 109.46770 * 166.55504 * 5 4 3 32 32 H 1.09000 * 109.47210 * 197.23750 * 6 4 3 33 33 H 1.09002 * 109.47421 * 317.23563 * 6 4 3 34 34 H 1.08995 * 109.46952 * 77.23568 * 6 4 3 35 35 H 1.08998 * 109.46741 * 300.00337 * 7 4 3 36 36 H 1.08994 * 109.46950 * 59.99953 * 7 4 3 37 37 H 1.08991 * 109.46859 * 179.97438 * 7 4 3 38 38 H 1.09005 * 109.58099 * 246.20295 * 11 10 8 39 39 H 1.08996 * 109.58144 * 6.62493 * 11 10 8 40 40 H 1.09004 * 109.64004 * 294.86559 * 12 11 10 41 41 H 1.09007 * 109.43035 * 174.72333 * 12 11 10 42 42 H 1.08998 * 109.45722 * 178.48892 * 13 12 11 43 43 H 1.09003 * 109.45044 * 58.51973 * 13 12 11 44 44 H 0.97000 * 119.99643 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.58746 * 353.37660 * 24 10 8 46 46 H 1.08997 * 109.58968 * 113.79784 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6710 1.1563 -0.1546 5 6 4.0434 0.6019 -1.5312 6 6 4.2986 0.2831 0.9337 7 6 4.1929 2.5886 -0.0233 8 6 2.2424 -1.2739 0.0006 9 8 2.5139 -1.8198 -1.0518 10 7 2.6155 -1.8362 1.1672 11 6 2.2152 -1.2382 2.4483 12 6 1.5233 -2.3166 3.2958 13 6 2.4520 -3.5256 3.4299 14 6 2.7343 -4.1103 2.0441 15 1 1.7949 -4.3993 1.5729 16 6 3.6224 -5.3203 2.1793 17 1 3.9510 -5.6424 3.1564 18 6 4.0153 -6.0162 1.0558 19 7 3.6155 -5.6236 -0.1340 20 14 5.1155 -7.5164 1.2235 21 1 4.4350 -8.5384 2.0587 22 1 5.3922 -8.0803 -0.1221 23 1 6.3945 -7.1227 1.8672 24 6 3.4353 -3.0554 1.1823 25 1 -0.3634 -0.0867 -1.0241 26 1 -0.3634 -0.8434 0.5870 27 1 -0.3634 0.9302 0.4369 28 1 1.6376 2.0838 0.1107 29 1 3.4155 1.0660 -2.2917 30 1 3.8897 -0.4771 -1.5420 31 1 5.0903 0.8220 -1.7404 32 1 5.3590 0.5190 1.0224 33 1 3.8028 0.4758 1.8852 34 1 4.1810 -0.7677 0.6691 35 1 3.7457 3.2107 -0.7986 36 1 3.9275 2.9835 0.9573 37 1 5.2771 2.5918 -0.1347 38 1 3.0978 -0.8692 2.9708 39 1 1.5244 -0.4148 2.2671 40 1 0.5952 -2.6226 2.8128 41 1 1.3039 -1.9149 4.2851 42 1 1.9754 -4.2822 4.0531 43 1 3.3896 -3.2137 3.8904 44 1 3.8922 -6.1129 -0.9245 45 1 3.5498 -3.4314 0.1656 46 1 4.4153 -2.8316 1.6038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:12 Heat of formation + Delta-G solvation = -29.478012 kcal Electronic energy + Delta-G solvation = -23968.888889 eV Core-core repulsion = 20858.513901 eV Total energy + Delta-G solvation = -3110.374988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.23744 -37.28503 -36.31941 -33.60998 -32.99524 -31.72322 -29.72401 -27.32478 -26.87537 -26.63332 -25.18948 -24.86694 -21.96590 -21.68943 -19.88494 -18.68888 -17.64848 -16.25371 -15.84857 -15.51642 -15.09023 -14.53262 -14.00536 -13.93987 -13.65389 -13.46504 -13.10371 -13.03793 -12.82197 -12.63047 -12.56614 -12.33267 -12.15199 -12.01054 -11.78628 -11.70001 -11.26893 -10.98700 -10.89680 -10.73008 -10.53803 -10.45033 -10.30382 -10.23965 -10.18509 -9.83530 -9.30210 -9.11634 -8.88543 -8.59639 -8.39888 -7.62529 -5.97931 -4.06948 2.03034 3.26515 3.32844 3.38752 3.39859 3.85942 4.44017 4.75071 4.91947 5.07293 5.15197 5.31528 5.37668 5.42949 5.48847 5.55292 5.65069 5.70030 5.73376 5.75797 5.86228 5.96739 5.99156 6.01590 6.03922 6.19781 6.22996 6.30051 6.30728 6.34221 6.52127 6.60675 6.63776 6.71969 6.73231 6.85606 6.89797 6.99434 7.18084 7.32847 7.65940 7.89277 8.01902 8.28907 8.40633 8.90801 8.97948 9.58535 11.07035 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.005749 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.415532 B = 4869.547277 C = 5295.015184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.153 4.153 3 C -0.117 4.117 4 C -0.042 4.042 5 C -0.155 4.155 6 C -0.168 4.168 7 C -0.135 4.135 8 C 0.554 3.446 9 O -0.531 6.531 10 N -0.599 5.599 11 C 0.110 3.890 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.264 0.736 45 H 0.123 0.877 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 15.197 3.202 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.156 4.156 3 C -0.136 4.136 4 C -0.042 4.042 5 C -0.212 4.212 6 C -0.226 4.226 7 C -0.193 4.193 8 C 0.342 3.658 9 O -0.409 6.409 10 N -0.332 5.332 11 C -0.013 4.013 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.022 3.978 15 H 0.046 0.954 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.008 4.008 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.141 0.859 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.009 14.830 2.442 15.328 hybrid contribution 0.560 -0.684 0.163 0.899 sum -2.449 14.146 2.604 14.591 Atomic orbital electron populations 1.20695 0.90432 1.02405 1.02665 1.21582 0.96624 0.93972 1.03436 1.23245 0.95207 0.96298 0.98816 1.19646 0.91862 0.95920 0.96815 1.22234 1.00179 1.04228 0.94569 1.22633 0.99852 1.02308 0.97776 1.21884 1.00782 0.95389 1.01214 1.18252 0.78930 0.84355 0.84234 1.90780 1.56060 1.63250 1.30855 1.48571 1.52053 1.28186 1.04358 1.21775 0.98768 0.95522 0.85258 1.22035 0.99553 0.97169 0.98449 1.21624 0.97498 0.95262 1.00418 1.18949 0.96667 0.92578 0.89628 0.95375 1.21040 1.31194 1.10856 0.92928 0.92489 1.25045 0.96095 0.97397 0.95436 1.69880 1.44352 1.39741 0.97708 0.86670 0.81080 0.83180 0.77141 1.20311 1.21277 1.20282 1.22280 0.91094 0.81050 1.06397 0.90921 0.91603 0.91528 0.86424 0.93166 0.89399 0.93212 0.93143 0.92420 0.89378 0.92882 0.92828 0.92685 0.91907 0.91049 0.92224 0.92382 0.93120 0.93226 0.92616 0.85903 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.91 36.00 0.36 -0.96 16 2 C -0.15 -2.34 3.55 -102.85 -0.37 -2.70 16 3 C -0.12 -1.54 8.07 -36.12 -0.29 -1.84 16 4 C -0.04 -0.58 0.75 -155.65 -0.12 -0.70 16 5 C -0.16 -2.41 8.21 37.16 0.30 -2.11 16 6 C -0.17 -2.53 6.85 37.16 0.25 -2.27 16 7 C -0.14 -1.47 8.30 37.16 0.31 -1.16 16 8 C 0.55 10.96 3.85 -12.67 -0.05 10.91 16 9 O -0.53 -12.84 14.16 5.26 0.07 -12.77 16 10 N -0.60 -11.66 1.50 -173.89 -0.26 -11.92 16 11 C 0.11 1.72 4.81 -3.49 -0.02 1.70 16 12 C -0.13 -2.15 6.10 -26.39 -0.16 -2.31 16 13 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 14 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 16 C -0.52 -14.04 8.57 -34.44 -0.29 -14.34 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -25.58 11.39 55.43 0.63 -24.95 16 20 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.11 2.64 4.70 -3.71 -0.02 2.63 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.64 7.99 -51.93 -0.41 0.23 16 28 H 0.12 1.24 7.93 -52.49 -0.42 0.83 16 29 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.09 1.70 4.59 -51.93 -0.24 1.47 16 31 H 0.05 0.70 8.07 -51.93 -0.42 0.29 16 32 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 33 H 0.06 0.79 5.71 -51.93 -0.30 0.50 16 34 H 0.09 1.61 3.57 -51.93 -0.19 1.43 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.92 6.76 -51.93 -0.35 0.57 16 39 H 0.07 0.96 6.27 -51.93 -0.33 0.64 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.12 3.43 5.11 -51.93 -0.27 3.16 16 46 H 0.04 0.99 8.06 -51.93 -0.42 0.57 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -29.97 341.82 -7.88 -37.86 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.93 Total: 3.42 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.52 Total: -13.02 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.37 Total: -36.87 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.07 Total: -12.77 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.97 -7.88 -37.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.377 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds