Wall clock time and date at job start Tue Mar 31 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32994 * 119.99891 * 2 1 4 4 C 1.50707 * 119.99701 * 186.80269 * 3 2 1 5 5 C 1.53000 * 109.46984 * 63.93702 * 4 3 2 6 6 C 1.53000 * 109.47034 * 303.93659 * 4 3 2 7 7 C 1.53004 * 109.46926 * 183.93790 * 4 3 2 8 8 C 1.47099 * 119.99854 * 179.97438 * 2 1 3 9 9 O 1.21616 * 119.99807 * 87.95668 * 8 2 1 10 10 N 1.34773 * 120.00130 * 267.95203 * 8 2 1 11 11 C 1.46931 * 120.63381 * 4.25167 * 10 8 2 12 12 C 1.53617 * 108.54313 * 126.36523 * 11 10 8 13 13 C 1.53044 * 109.24205 * 54.86094 * 12 11 10 14 14 C 1.53038 * 109.53494 * 298.50635 * 13 12 11 15 15 H 1.09001 * 109.49954 * 301.41302 * 14 13 12 16 16 C 1.50702 * 109.52418 * 181.33316 * 14 13 12 17 17 H 1.08005 * 119.99799 * 0.14961 * 16 14 13 18 18 C 1.37879 * 120.00317 * 180.14500 * 16 14 13 19 19 N 1.31514 * 119.99531 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00084 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47275 * 60.00025 * 20 18 16 22 22 H 1.48499 * 109.47095 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46974 * 300.00007 * 20 18 16 24 24 C 1.46930 * 120.63089 * 184.52966 * 10 8 2 25 25 H 1.09007 * 109.47175 * 94.83698 * 1 2 3 26 26 H 1.08996 * 109.47467 * 214.83737 * 1 2 3 27 27 H 1.09000 * 109.47421 * 334.84080 * 1 2 3 28 28 H 1.07999 * 120.00324 * 6.79838 * 3 2 1 29 29 H 1.08999 * 109.47135 * 46.55708 * 5 4 3 30 30 H 1.08999 * 109.47087 * 286.55731 * 5 4 3 31 31 H 1.09005 * 109.46770 * 166.55504 * 5 4 3 32 32 H 1.09000 * 109.47210 * 197.23750 * 6 4 3 33 33 H 1.09002 * 109.47421 * 317.23563 * 6 4 3 34 34 H 1.08995 * 109.46952 * 77.23568 * 6 4 3 35 35 H 1.08998 * 109.46741 * 300.00337 * 7 4 3 36 36 H 1.08994 * 109.46950 * 59.99953 * 7 4 3 37 37 H 1.08991 * 109.46859 * 179.97438 * 7 4 3 38 38 H 1.09005 * 109.58099 * 246.20295 * 11 10 8 39 39 H 1.08996 * 109.58144 * 6.62493 * 11 10 8 40 40 H 1.09004 * 109.64004 * 294.86559 * 12 11 10 41 41 H 1.09007 * 109.43035 * 174.72333 * 12 11 10 42 42 H 1.08998 * 109.45722 * 178.48892 * 13 12 11 43 43 H 1.09003 * 109.45044 * 58.51973 * 13 12 11 44 44 H 0.97000 * 119.99643 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.58746 * 353.37660 * 24 10 8 46 46 H 1.08997 * 109.58968 * 113.79784 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6710 1.1563 -0.1546 5 6 4.0434 0.6019 -1.5312 6 6 4.2986 0.2831 0.9337 7 6 4.1929 2.5886 -0.0233 8 6 2.2424 -1.2739 0.0006 9 8 2.5139 -1.8198 -1.0518 10 7 2.6155 -1.8362 1.1672 11 6 2.2152 -1.2382 2.4483 12 6 1.5233 -2.3166 3.2958 13 6 2.4520 -3.5256 3.4299 14 6 2.7343 -4.1103 2.0441 15 1 1.7949 -4.3993 1.5729 16 6 3.6224 -5.3203 2.1793 17 1 3.9510 -5.6424 3.1564 18 6 4.0153 -6.0162 1.0558 19 7 3.6155 -5.6236 -0.1340 20 14 5.1155 -7.5164 1.2235 21 1 4.4350 -8.5384 2.0587 22 1 5.3922 -8.0803 -0.1221 23 1 6.3945 -7.1227 1.8672 24 6 3.4353 -3.0554 1.1823 25 1 -0.3634 -0.0867 -1.0241 26 1 -0.3634 -0.8434 0.5870 27 1 -0.3634 0.9302 0.4369 28 1 1.6376 2.0838 0.1107 29 1 3.4155 1.0660 -2.2917 30 1 3.8897 -0.4771 -1.5420 31 1 5.0903 0.8220 -1.7404 32 1 5.3590 0.5190 1.0224 33 1 3.8028 0.4758 1.8852 34 1 4.1810 -0.7677 0.6691 35 1 3.7457 3.2107 -0.7986 36 1 3.9275 2.9835 0.9573 37 1 5.2771 2.5918 -0.1347 38 1 3.0978 -0.8692 2.9708 39 1 1.5244 -0.4148 2.2671 40 1 0.5952 -2.6226 2.8128 41 1 1.3039 -1.9149 4.2851 42 1 1.9754 -4.2822 4.0531 43 1 3.3896 -3.2137 3.8904 44 1 3.8922 -6.1129 -0.9245 45 1 3.5498 -3.4314 0.1656 46 1 4.4153 -2.8316 1.6038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:11 Heat of formation + Delta-G solvation = -45.741379 kcal Electronic energy + Delta-G solvation = -23969.594121 eV Core-core repulsion = 20858.513901 eV Total energy + Delta-G solvation = -3111.080221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.67318 -38.70624 -37.79444 -35.32685 -34.36952 -33.35768 -31.48972 -28.28172 -28.11579 -27.68725 -27.12600 -26.41545 -23.54648 -23.14907 -21.30547 -20.11262 -19.14886 -18.21747 -17.31461 -16.96074 -16.48854 -16.41214 -15.40533 -15.18513 -15.09470 -14.73900 -14.49198 -14.38252 -14.19737 -14.00582 -13.92801 -13.68654 -13.54079 -13.15151 -13.11074 -12.87750 -12.79929 -12.66531 -12.54178 -12.25871 -12.18087 -11.90679 -11.68502 -11.61210 -11.55067 -11.38222 -11.09013 -10.93624 -10.59966 -10.48612 -9.76676 -9.24732 -8.10774 -6.28182 0.91183 1.39384 1.40909 1.49179 1.78554 2.34900 2.43965 3.17171 3.63187 3.80254 3.96925 4.08839 4.10722 4.18367 4.31901 4.37417 4.52424 4.59764 4.70659 4.72380 4.74067 4.77612 4.80737 4.82816 4.87898 4.92946 4.96648 5.09187 5.11643 5.13124 5.21275 5.24849 5.26535 5.30630 5.36961 5.45163 5.46987 5.49441 5.56297 5.70878 5.81287 5.91445 6.01513 6.33655 6.73893 6.84699 7.39265 7.43273 8.91976 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.005749 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.415532 B = 4869.547277 C = 5295.015184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.175 4.175 3 C -0.090 4.090 4 C -0.047 4.047 5 C -0.153 4.153 6 C -0.167 4.167 7 C -0.128 4.128 8 C 0.549 3.451 9 O -0.591 6.591 10 N -0.599 5.599 11 C 0.107 3.893 12 C -0.126 4.126 13 C -0.105 4.105 14 C 0.039 3.961 15 H -0.017 1.017 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.010 3.990 19 N -0.915 5.915 20 Si 0.956 3.044 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.131 3.869 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.163 0.837 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.103 0.897 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.258 0.742 45 H 0.074 0.926 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 18.381 5.502 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.178 4.178 3 C -0.109 4.109 4 C -0.047 4.047 5 C -0.211 4.211 6 C -0.224 4.224 7 C -0.185 4.185 8 C 0.340 3.660 9 O -0.473 6.473 10 N -0.330 5.330 11 C -0.014 4.014 12 C -0.164 4.164 13 C -0.142 4.142 14 C 0.019 3.981 15 H 0.001 0.999 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.189 4.189 19 N -0.553 5.553 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.192 1.192 24 C 0.008 3.992 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.180 0.820 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.581 18.036 4.793 19.002 hybrid contribution 0.784 -1.680 -0.579 1.943 sum -2.797 16.355 4.214 17.120 Atomic orbital electron populations 1.20727 0.88217 1.04121 1.02601 1.21510 0.97826 0.91837 1.06580 1.23623 0.94766 0.97020 0.95453 1.19728 0.92666 0.97585 0.94742 1.22165 1.00866 1.01450 0.96577 1.22566 1.00648 1.00199 0.99011 1.21822 1.00822 0.92953 1.02912 1.19105 0.78145 0.85593 0.83144 1.90749 1.58252 1.65275 1.33003 1.48509 1.51355 1.26862 1.06282 1.22079 1.00117 0.96044 0.83204 1.21999 0.97952 0.95615 1.00869 1.21510 0.98917 0.96880 0.96921 1.18894 0.94061 0.92645 0.92464 0.99873 1.21494 1.31138 1.11838 0.92991 0.92055 1.25890 0.97580 1.00418 0.95060 1.70097 1.45905 1.40973 0.98355 0.85638 0.79521 0.79702 0.76990 1.19276 1.21555 1.19187 1.21587 0.91466 0.82952 1.03149 0.91499 0.92767 0.87314 0.81983 0.92548 0.93835 0.92561 0.92732 0.90692 0.93320 0.91428 0.90816 0.92726 0.90292 0.87788 0.93211 0.87903 0.93125 0.92477 0.93248 0.90776 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 9.91 71.23 0.71 -1.54 16 2 C -0.17 -5.02 3.55 -18.71 -0.07 -5.09 16 3 C -0.09 -2.05 8.07 24.52 0.20 -1.85 16 4 C -0.05 -1.18 0.75 -52.92 -0.04 -1.22 16 5 C -0.15 -4.80 8.21 71.98 0.59 -4.21 16 6 C -0.17 -4.79 6.85 71.98 0.49 -4.29 16 7 C -0.13 -2.24 8.30 71.98 0.60 -1.64 16 8 C 0.55 22.44 3.85 86.57 0.33 22.77 16 9 O -0.59 -30.88 14.16 -4.08 -0.06 -30.94 16 10 N -0.60 -23.86 1.50 -822.33 -1.23 -25.10 16 11 C 0.11 3.10 4.81 86.50 0.42 3.52 16 12 C -0.13 -3.77 6.10 30.82 0.19 -3.58 16 13 C -0.10 -4.07 5.11 30.62 0.16 -3.92 16 14 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 15 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 16 C -0.54 -29.95 8.57 25.60 0.22 -29.73 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.01 0.57 5.30 84.66 0.45 1.01 16 19 N -0.91 -56.75 11.39 21.45 0.24 -56.51 16 20 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.13 6.58 4.70 86.36 0.41 6.99 16 25 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.11 1.53 7.99 -2.39 -0.02 1.51 16 28 H 0.16 2.33 7.93 -2.91 -0.02 2.31 16 29 H 0.06 1.63 8.07 -2.39 -0.02 1.61 16 30 H 0.04 1.79 4.59 -2.39 -0.01 1.78 16 31 H 0.06 1.61 8.07 -2.38 -0.02 1.59 16 32 H 0.05 1.47 8.02 -2.39 -0.02 1.45 16 33 H 0.07 1.83 5.71 -2.39 -0.01 1.82 16 34 H 0.05 1.82 3.57 -2.39 -0.01 1.81 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 2.06 6.76 -2.38 -0.02 2.04 16 39 H 0.10 2.38 6.27 -2.39 -0.01 2.37 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.07 4.51 5.11 -2.39 -0.01 4.50 16 46 H 0.03 1.69 8.06 -2.39 -0.02 1.67 16 Total: -1.00 -73.44 341.82 6.54 -66.90 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.94 Total: 19.50 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.62 Total: -20.83 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -0.99 Total: -81.60 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.06 Total: -30.94 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.44 6.54 -66.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.160 kcal (2) G-P(sol) polarization free energy of solvation -73.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds