Wall clock time and date at job start Tue Mar 31 2020 01:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32994 * 119.99477 * 2 1 4 4 C 1.50696 * 120.00224 * 352.42554 * 3 2 1 5 5 C 1.52992 * 109.47608 * 64.62917 * 4 3 2 6 6 C 1.53004 * 109.47304 * 184.63447 * 4 3 2 7 7 C 1.53002 * 109.46973 * 304.63030 * 4 3 2 8 8 C 1.47101 * 120.00477 * 179.97438 * 2 1 3 9 9 O 1.21614 * 119.99852 * 76.10575 * 8 2 1 10 10 N 1.34784 * 119.99647 * 256.37783 * 8 2 1 11 11 C 1.46918 * 120.63191 * 4.29273 * 10 8 2 12 12 C 1.53190 * 108.77979 * 126.36486 * 11 10 8 13 13 C 1.53047 * 109.30936 * 54.62967 * 12 11 10 14 14 C 1.53038 * 109.54160 * 298.63633 * 13 12 11 15 15 H 1.09003 * 109.49614 * 301.41945 * 14 13 12 16 16 C 1.50693 * 109.50079 * 181.34992 * 14 13 12 17 17 H 1.08001 * 119.99895 * 0.02562 * 16 14 13 18 18 C 1.37874 * 120.00058 * 180.02562 * 16 14 13 19 19 N 1.31515 * 120.00370 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99993 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46830 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47071 * 119.99996 * 20 18 16 23 23 H 1.48494 * 109.47203 * 240.00015 * 20 18 16 24 24 C 1.46925 * 120.62346 * 184.00406 * 10 8 2 25 25 H 1.08998 * 109.46948 * 243.51685 * 1 2 3 26 26 H 1.08987 * 109.47751 * 3.52087 * 1 2 3 27 27 H 1.09004 * 109.46641 * 123.52561 * 1 2 3 28 28 H 1.08004 * 120.00316 * 172.41803 * 3 2 1 29 29 H 1.09004 * 109.47209 * 75.01841 * 5 4 3 30 30 H 1.08997 * 109.47684 * 195.01747 * 5 4 3 31 31 H 1.09004 * 109.47436 * 315.01911 * 5 4 3 32 32 H 1.08997 * 109.47250 * 59.99861 * 6 4 3 33 33 H 1.09005 * 109.47188 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.47165 * 299.99414 * 6 4 3 35 35 H 1.08998 * 109.46937 * 62.17306 * 7 4 3 36 36 H 1.09000 * 109.47047 * 182.17834 * 7 4 3 37 37 H 1.08999 * 109.47249 * 302.17700 * 7 4 3 38 38 H 1.09009 * 109.58209 * 246.15101 * 11 10 8 39 39 H 1.09003 * 109.59008 * 6.43288 * 11 10 8 40 40 H 1.08993 * 109.50315 * 174.57879 * 12 11 10 41 41 H 1.09001 * 109.49626 * 294.68625 * 12 11 10 42 42 H 1.08997 * 109.45914 * 58.65991 * 13 12 11 43 43 H 1.08999 * 109.45714 * 178.61824 * 13 12 11 44 44 H 0.96997 * 120.00205 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.59076 * 353.42293 * 24 10 8 46 46 H 1.08998 * 109.58429 * 113.84838 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1718 1.1518 0.0000 4 6 1.4282 2.4512 -0.1720 5 6 0.4948 2.6665 1.0209 6 6 2.4294 3.6054 -0.2510 7 6 0.6052 2.4009 -1.4609 8 6 2.2426 -1.2739 0.0006 9 8 2.3276 -1.9274 -1.0215 10 7 2.8176 -1.7194 1.1352 11 6 2.6399 -0.9929 2.3998 12 6 2.1171 -1.9678 3.4594 13 6 3.0610 -3.1690 3.5517 14 6 3.0995 -3.8945 2.2048 15 1 2.0936 -4.2176 1.9368 16 6 4.0034 -5.0960 2.3063 17 1 4.5007 -5.3204 3.2384 18 6 4.1955 -5.9088 1.2093 19 7 3.5904 -5.6352 0.0741 20 14 5.3166 -7.3978 1.3349 21 1 5.8729 -7.4839 2.7091 22 1 4.5403 -8.6283 1.0376 23 1 6.4271 -7.2651 0.3582 24 6 3.6289 -2.9444 1.1321 25 1 -0.3633 -0.4583 0.9198 26 1 -0.3634 1.0256 -0.0631 27 1 -0.3633 -0.5676 -0.8568 28 1 3.2448 1.1561 0.1234 29 1 1.0797 2.9664 1.8904 30 1 -0.2268 3.4476 0.7815 31 1 -0.0337 1.7388 1.2409 32 1 3.0944 3.4520 -1.1010 33 1 1.8915 4.5452 -0.3759 34 1 3.0157 3.6412 0.6672 35 1 -0.1341 1.6032 -1.3890 36 1 0.0977 3.3548 -1.6053 37 1 1.2656 2.2091 -2.3065 38 1 3.5965 -0.5813 2.7222 39 1 1.9230 -0.1840 2.2589 40 1 2.0721 -1.4654 4.4256 41 1 1.1204 -2.3091 3.1795 42 1 4.0630 -2.8245 3.8074 43 1 2.7046 -3.8525 4.3223 44 1 3.7253 -6.2072 -0.6975 45 1 3.5623 -3.4243 0.1558 46 1 4.6676 -2.6953 1.3490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:16 Heat of formation + Delta-G solvation = -27.425534 kcal Electronic energy + Delta-G solvation = -23145.170609 eV Core-core repulsion = 20034.884623 eV Total energy + Delta-G solvation = -3110.285986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.81657 -38.22307 -36.55677 -33.48880 -32.54891 -31.58939 -29.73869 -28.35398 -27.34907 -26.48419 -25.15583 -24.84478 -22.03594 -21.73502 -19.63933 -18.60139 -17.68460 -16.49058 -15.99324 -15.54245 -14.93679 -14.64444 -14.49882 -14.24598 -13.95581 -13.65643 -13.44819 -13.22976 -12.73929 -12.56636 -12.48626 -12.17649 -12.12267 -11.97816 -11.86182 -11.60564 -11.54704 -11.13429 -11.00335 -10.91155 -10.87383 -10.47171 -10.37886 -10.34902 -10.22097 -9.86571 -9.21978 -9.11354 -8.82135 -8.71624 -8.41637 -7.70087 -5.97730 -4.06984 1.99534 3.26678 3.31572 3.39290 3.42321 3.84028 4.44162 4.63236 4.72086 4.88335 5.07204 5.15782 5.31813 5.33561 5.40155 5.47212 5.50171 5.54780 5.59274 5.64486 5.71221 5.73894 5.79078 5.82824 5.89240 5.98621 6.03795 6.11028 6.20937 6.23637 6.26771 6.33983 6.52888 6.63441 6.69494 6.78302 6.88390 6.99899 7.18362 7.33719 7.67113 7.89951 8.02658 8.30186 8.41109 8.90862 8.98697 9.58799 11.07417 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028851 B = 0.004383 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.285526 B = 6387.235681 C = 6827.408569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C -0.124 4.124 4 C -0.035 4.035 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.157 4.157 8 C 0.543 3.457 9 O -0.534 6.534 10 N -0.601 5.601 11 C 0.111 3.889 12 C -0.133 4.133 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.880 5.880 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.110 3.890 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.263 0.737 45 H 0.123 0.877 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 17.837 2.695 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.142 4.142 3 C -0.143 4.143 4 C -0.035 4.035 5 C -0.214 4.214 6 C -0.196 4.196 7 C -0.214 4.214 8 C 0.330 3.670 9 O -0.411 6.411 10 N -0.333 5.333 11 C -0.013 4.013 12 C -0.171 4.171 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.517 5.517 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.010 4.010 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.814 17.401 1.963 18.451 hybrid contribution 0.791 -0.872 0.086 1.181 sum -5.022 16.528 2.049 17.396 Atomic orbital electron populations 1.21447 0.90951 1.04036 1.02668 1.21497 0.96786 0.93420 1.02463 1.23147 0.99285 0.92306 0.99546 1.19541 0.95218 0.92838 0.95941 1.22279 0.99177 1.02627 0.97289 1.21888 0.98580 0.97217 1.01953 1.22310 1.00356 1.02200 0.96530 1.18524 0.79290 0.85191 0.83998 1.90825 1.60672 1.57214 1.32418 1.48543 1.50468 1.27335 1.06952 1.21607 1.00359 0.94426 0.84873 1.21942 1.00287 0.97633 0.97279 1.21626 0.97439 0.95318 1.00431 1.18888 0.97537 0.92518 0.89003 0.95376 1.21115 1.28457 1.09097 0.97251 0.92319 1.25062 0.95794 0.97725 0.95471 1.69903 1.42249 1.38178 1.01419 0.86544 0.80625 0.82847 0.78044 1.19785 1.21005 1.20981 1.22203 0.91030 0.81539 1.06193 0.91319 0.88428 0.91161 0.86970 0.92439 0.92520 0.90739 0.92541 0.92615 0.92494 0.90637 0.92688 0.92396 0.92358 0.90901 0.92279 0.92212 0.93229 0.93052 0.92710 0.85933 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.28 36.00 0.26 -1.46 16 2 C -0.14 -2.13 3.68 -102.85 -0.38 -2.51 16 3 C -0.12 -1.61 7.72 -36.13 -0.28 -1.89 16 4 C -0.04 -0.35 0.75 -155.66 -0.12 -0.47 16 5 C -0.16 -1.35 8.05 37.15 0.30 -1.05 16 6 C -0.14 -1.22 8.36 37.16 0.31 -0.91 16 7 C -0.16 -1.53 7.99 37.16 0.30 -1.24 16 8 C 0.54 11.37 7.09 -12.66 -0.09 11.28 16 9 O -0.53 -13.79 16.52 5.27 0.09 -13.70 16 10 N -0.60 -12.39 2.98 -174.43 -0.52 -12.91 16 11 C 0.11 1.79 6.22 -3.72 -0.02 1.77 16 12 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 13 C -0.11 -2.22 5.11 -26.69 -0.14 -2.36 16 14 C 0.04 0.99 2.24 -91.88 -0.21 0.79 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.27 8.57 -34.44 -0.30 -14.57 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 19 N -0.88 -26.09 11.39 55.43 0.63 -25.45 16 20 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.11 2.74 5.39 -3.93 -0.02 2.72 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.10 0.98 2.67 -51.94 -0.14 0.84 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.11 1.52 7.99 -52.48 -0.42 1.10 16 29 H 0.06 0.47 8.05 -51.93 -0.42 0.05 16 30 H 0.06 0.41 8.05 -51.93 -0.42 0.00 16 31 H 0.07 0.66 4.88 -51.93 -0.25 0.41 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.75 4.69 -51.93 -0.24 0.51 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.07 1.00 6.12 -51.93 -0.32 0.68 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.12 3.56 5.10 -51.93 -0.26 3.29 16 46 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -31.65 349.14 -8.13 -39.78 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.93 Total: 1.19 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.63 Total: -10.59 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.11 Total: -38.36 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.65 -8.13 -39.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.350 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds