Wall clock time and date at job start Tue Mar 31 2020 01:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32994 * 119.99477 * 2 1 4 4 C 1.50696 * 120.00224 * 352.42554 * 3 2 1 5 5 C 1.52992 * 109.47608 * 64.62917 * 4 3 2 6 6 C 1.53004 * 109.47304 * 184.63447 * 4 3 2 7 7 C 1.53002 * 109.46973 * 304.63030 * 4 3 2 8 8 C 1.47101 * 120.00477 * 179.97438 * 2 1 3 9 9 O 1.21614 * 119.99852 * 76.10575 * 8 2 1 10 10 N 1.34784 * 119.99647 * 256.37783 * 8 2 1 11 11 C 1.46918 * 120.63191 * 4.29273 * 10 8 2 12 12 C 1.53190 * 108.77979 * 126.36486 * 11 10 8 13 13 C 1.53047 * 109.30936 * 54.62967 * 12 11 10 14 14 C 1.53038 * 109.54160 * 298.63633 * 13 12 11 15 15 H 1.09003 * 109.49614 * 301.41945 * 14 13 12 16 16 C 1.50693 * 109.50079 * 181.34992 * 14 13 12 17 17 H 1.08001 * 119.99895 * 0.02562 * 16 14 13 18 18 C 1.37874 * 120.00058 * 180.02562 * 16 14 13 19 19 N 1.31515 * 120.00370 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99993 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46830 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47071 * 119.99996 * 20 18 16 23 23 H 1.48494 * 109.47203 * 240.00015 * 20 18 16 24 24 C 1.46925 * 120.62346 * 184.00406 * 10 8 2 25 25 H 1.08998 * 109.46948 * 243.51685 * 1 2 3 26 26 H 1.08987 * 109.47751 * 3.52087 * 1 2 3 27 27 H 1.09004 * 109.46641 * 123.52561 * 1 2 3 28 28 H 1.08004 * 120.00316 * 172.41803 * 3 2 1 29 29 H 1.09004 * 109.47209 * 75.01841 * 5 4 3 30 30 H 1.08997 * 109.47684 * 195.01747 * 5 4 3 31 31 H 1.09004 * 109.47436 * 315.01911 * 5 4 3 32 32 H 1.08997 * 109.47250 * 59.99861 * 6 4 3 33 33 H 1.09005 * 109.47188 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.47165 * 299.99414 * 6 4 3 35 35 H 1.08998 * 109.46937 * 62.17306 * 7 4 3 36 36 H 1.09000 * 109.47047 * 182.17834 * 7 4 3 37 37 H 1.08999 * 109.47249 * 302.17700 * 7 4 3 38 38 H 1.09009 * 109.58209 * 246.15101 * 11 10 8 39 39 H 1.09003 * 109.59008 * 6.43288 * 11 10 8 40 40 H 1.08993 * 109.50315 * 174.57879 * 12 11 10 41 41 H 1.09001 * 109.49626 * 294.68625 * 12 11 10 42 42 H 1.08997 * 109.45914 * 58.65991 * 13 12 11 43 43 H 1.08999 * 109.45714 * 178.61824 * 13 12 11 44 44 H 0.96997 * 120.00205 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.59076 * 353.42293 * 24 10 8 46 46 H 1.08998 * 109.58429 * 113.84838 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1718 1.1518 0.0000 4 6 1.4282 2.4512 -0.1720 5 6 0.4948 2.6665 1.0209 6 6 2.4294 3.6054 -0.2510 7 6 0.6052 2.4009 -1.4609 8 6 2.2426 -1.2739 0.0006 9 8 2.3276 -1.9274 -1.0215 10 7 2.8176 -1.7194 1.1352 11 6 2.6399 -0.9929 2.3998 12 6 2.1171 -1.9678 3.4594 13 6 3.0610 -3.1690 3.5517 14 6 3.0995 -3.8945 2.2048 15 1 2.0936 -4.2176 1.9368 16 6 4.0034 -5.0960 2.3063 17 1 4.5007 -5.3204 3.2384 18 6 4.1955 -5.9088 1.2093 19 7 3.5904 -5.6352 0.0741 20 14 5.3166 -7.3978 1.3349 21 1 5.8729 -7.4839 2.7091 22 1 4.5403 -8.6283 1.0376 23 1 6.4271 -7.2651 0.3582 24 6 3.6289 -2.9444 1.1321 25 1 -0.3633 -0.4583 0.9198 26 1 -0.3634 1.0256 -0.0631 27 1 -0.3633 -0.5676 -0.8568 28 1 3.2448 1.1561 0.1234 29 1 1.0797 2.9664 1.8904 30 1 -0.2268 3.4476 0.7815 31 1 -0.0337 1.7388 1.2409 32 1 3.0944 3.4520 -1.1010 33 1 1.8915 4.5452 -0.3759 34 1 3.0157 3.6412 0.6672 35 1 -0.1341 1.6032 -1.3890 36 1 0.0977 3.3548 -1.6053 37 1 1.2656 2.2091 -2.3065 38 1 3.5965 -0.5813 2.7222 39 1 1.9230 -0.1840 2.2589 40 1 2.0721 -1.4654 4.4256 41 1 1.1204 -2.3091 3.1795 42 1 4.0630 -2.8245 3.8074 43 1 2.7046 -3.8525 4.3223 44 1 3.7253 -6.2072 -0.6975 45 1 3.5623 -3.4243 0.1558 46 1 4.6676 -2.6953 1.3490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:14 Heat of formation + Delta-G solvation = -45.787127 kcal Electronic energy + Delta-G solvation = -23145.966828 eV Core-core repulsion = 20034.884623 eV Total energy + Delta-G solvation = -3111.082204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.29600 -39.34760 -38.25580 -35.36094 -33.93141 -33.14348 -31.53922 -29.29808 -28.04131 -27.30676 -27.15337 -26.44132 -23.57634 -23.27411 -21.15541 -19.84343 -19.13973 -18.32475 -17.59548 -17.03376 -16.53581 -16.16150 -15.77969 -15.30353 -15.13461 -14.95989 -14.76505 -14.59619 -14.40490 -14.24888 -13.87494 -13.54989 -13.21344 -12.93129 -12.86782 -12.79778 -12.71335 -12.61355 -12.32457 -12.31966 -12.23625 -11.92839 -11.87944 -11.78673 -11.65923 -11.28146 -11.06564 -10.96210 -10.58121 -10.45572 -9.86295 -9.45115 -8.13064 -6.31141 0.83940 1.38015 1.39237 1.51792 1.66208 2.26531 2.41120 3.15003 3.53180 3.90344 3.99876 4.06857 4.15160 4.15859 4.17206 4.32827 4.48227 4.56045 4.63778 4.69388 4.73869 4.79358 4.81732 4.85354 4.88316 4.92216 5.00441 5.06956 5.08346 5.12088 5.23072 5.24598 5.27581 5.32298 5.34279 5.44945 5.52702 5.54232 5.55484 5.61615 5.73405 5.86822 5.97745 6.30263 6.63657 6.82672 7.27472 7.39838 8.90551 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028851 B = 0.004383 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.285526 B = 6387.235681 C = 6827.408569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.161 4.161 3 C -0.094 4.094 4 C -0.034 4.034 5 C -0.156 4.156 6 C -0.139 4.139 7 C -0.159 4.159 8 C 0.534 3.466 9 O -0.599 6.599 10 N -0.603 5.603 11 C 0.107 3.893 12 C -0.125 4.125 13 C -0.105 4.105 14 C 0.038 3.962 15 H -0.016 1.016 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.918 5.918 20 Si 0.960 3.040 21 H -0.258 1.258 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.122 3.878 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.259 0.741 45 H 0.074 0.926 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 20.722 4.934 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.164 4.164 3 C -0.113 4.113 4 C -0.034 4.034 5 C -0.213 4.213 6 C -0.196 4.196 7 C -0.216 4.216 8 C 0.324 3.676 9 O -0.481 6.481 10 N -0.334 5.334 11 C -0.015 4.015 12 C -0.163 4.163 13 C -0.143 4.143 14 C 0.019 3.981 15 H 0.002 0.998 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.191 4.191 19 N -0.557 5.557 20 Si 0.785 3.215 21 H -0.182 1.182 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.001 4.001 25 H 0.091 0.909 26 H 0.148 0.852 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.186 20.317 4.260 21.661 hybrid contribution 0.945 -1.718 -0.616 2.055 sum -5.241 18.600 3.644 19.665 Atomic orbital electron populations 1.21506 0.88937 1.05844 1.02105 1.21229 0.97731 0.90971 1.06448 1.23474 0.99163 0.93121 0.95545 1.19649 0.95669 0.91174 0.96954 1.22274 0.99200 1.03237 0.96564 1.21893 0.98350 0.97391 1.01940 1.22331 1.00065 1.03405 0.95792 1.19520 0.78643 0.86540 0.82918 1.90778 1.62928 1.59693 1.34704 1.48606 1.49553 1.26246 1.09000 1.21955 1.02367 0.94713 0.82439 1.21912 0.98494 0.96254 0.99675 1.21518 0.99138 0.96586 0.97024 1.18825 0.94463 0.92768 0.92043 0.99797 1.21560 1.28471 1.10039 0.97298 0.91803 1.25939 0.97297 1.00844 0.95046 1.70114 1.44050 1.39322 1.02164 0.85477 0.78488 0.78972 0.78569 1.18214 1.20800 1.20871 1.21639 0.91479 0.83384 1.03557 0.90888 0.85152 0.93071 0.87632 0.91549 0.90515 0.91000 0.93409 0.90716 0.91920 0.91033 0.90235 0.93918 0.90445 0.87677 0.87556 0.93153 0.92387 0.92811 0.93173 0.90721 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 7.28 71.24 0.52 -2.62 16 2 C -0.16 -4.87 3.68 -18.70 -0.07 -4.94 16 3 C -0.09 -2.28 7.72 24.52 0.19 -2.09 16 4 C -0.03 -0.57 0.75 -52.93 -0.04 -0.61 16 5 C -0.16 -1.97 8.05 71.98 0.58 -1.39 16 6 C -0.14 -1.95 8.36 71.98 0.60 -1.35 16 7 C -0.16 -2.68 7.99 71.98 0.57 -2.11 16 8 C 0.53 23.28 7.09 86.57 0.61 23.90 16 9 O -0.60 -33.30 16.52 -4.07 -0.07 -33.36 16 10 N -0.60 -25.45 2.98 -824.01 -2.45 -27.91 16 11 C 0.11 3.21 6.22 86.36 0.54 3.75 16 12 C -0.13 -3.80 6.08 30.67 0.19 -3.61 16 13 C -0.10 -4.14 5.11 30.62 0.16 -3.98 16 14 C 0.04 1.99 2.24 -11.61 -0.03 1.96 16 15 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 16 C -0.54 -30.17 8.57 25.60 0.22 -29.95 16 17 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 18 C 0.01 0.45 5.31 84.65 0.45 0.90 16 19 N -0.92 -57.56 11.39 21.45 0.24 -57.32 16 20 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 C 0.12 6.35 5.39 86.22 0.46 6.82 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.13 2.28 2.67 -2.39 -0.01 2.27 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.11 2.70 7.99 -2.91 -0.02 2.68 16 29 H 0.07 0.76 8.05 -2.38 -0.02 0.74 16 30 H 0.08 0.72 8.05 -2.39 -0.02 0.70 16 31 H 0.07 0.97 4.88 -2.38 -0.01 0.96 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.80 8.14 -2.38 -0.02 0.79 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.27 4.69 -2.39 -0.01 1.26 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.11 2.52 6.12 -2.39 -0.01 2.50 16 40 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 45 H 0.07 4.67 5.10 -2.39 -0.01 4.66 16 46 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -75.69 349.14 5.64 -70.05 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.94 Total: 16.69 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.96 Total: -15.32 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -2.21 Total: -85.23 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.07 Total: -33.36 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -75.69 5.64 -70.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.260 kcal (2) G-P(sol) polarization free energy of solvation -75.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds