Wall clock time and date at job start Tue Mar 31 2020 01:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32999 * 120.00115 * 2 1 4 4 C 1.50707 * 120.00022 * 191.58149 * 3 2 1 5 5 C 1.52995 * 109.46967 * 7.05860 * 4 3 2 6 6 C 1.52995 * 109.46806 * 127.05638 * 4 3 2 7 7 C 1.52992 * 109.46812 * 247.05683 * 4 3 2 8 8 C 1.47106 * 120.00122 * 179.97438 * 2 1 3 9 9 O 1.21612 * 119.99653 * 82.45038 * 8 2 1 10 10 N 1.34773 * 120.00130 * 262.44827 * 8 2 1 11 11 C 1.46929 * 120.63097 * 353.53067 * 10 8 2 12 12 C 1.53188 * 108.89283 * 233.51522 * 11 10 8 13 13 C 1.53075 * 109.29605 * 305.58197 * 12 11 10 14 14 C 1.53038 * 109.66180 * 61.15226 * 13 12 11 15 15 H 1.08992 * 109.49740 * 58.65341 * 14 13 12 16 16 C 1.50696 * 109.49940 * 178.75265 * 14 13 12 17 17 H 1.08006 * 119.99816 * 359.83454 * 16 14 13 18 18 C 1.37880 * 120.00191 * 179.83632 * 16 14 13 19 19 N 1.31513 * 119.99740 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00015 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47005 * 60.00180 * 20 18 16 22 22 H 1.48503 * 109.46939 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47014 * 299.99949 * 20 18 16 24 24 C 1.46928 * 120.62886 * 173.51039 * 10 8 2 25 25 H 1.09000 * 109.46777 * 265.01596 * 1 2 3 26 26 H 1.09002 * 109.47239 * 25.00964 * 1 2 3 27 27 H 1.08997 * 109.47290 * 145.00905 * 1 2 3 28 28 H 1.07998 * 120.00095 * 11.57562 * 3 2 1 29 29 H 1.08998 * 109.47569 * 54.17101 * 5 4 3 30 30 H 1.09001 * 109.47393 * 174.17242 * 5 4 3 31 31 H 1.09002 * 109.47085 * 294.17469 * 5 4 3 32 32 H 1.09003 * 109.47395 * 60.00568 * 6 4 3 33 33 H 1.09008 * 109.46956 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.47951 * 299.99750 * 6 4 3 35 35 H 1.09005 * 109.47274 * 60.00283 * 7 4 3 36 36 H 1.09001 * 109.47045 * 179.97438 * 7 4 3 37 37 H 1.08996 * 109.47847 * 300.00136 * 7 4 3 38 38 H 1.09004 * 109.58619 * 353.37133 * 11 10 8 39 39 H 1.08994 * 109.58192 * 113.65748 * 11 10 8 40 40 H 1.09004 * 109.49641 * 65.38510 * 12 11 10 41 41 H 1.08998 * 109.49882 * 185.48210 * 12 11 10 42 42 H 1.09000 * 109.34382 * 301.12549 * 13 12 11 43 43 H 1.09001 * 109.45398 * 181.24501 * 13 12 11 44 44 H 0.97004 * 119.99753 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.58428 * 246.19829 * 24 10 8 46 46 H 1.09000 * 109.58681 * 6.62274 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6560 1.1651 -0.2620 5 6 4.1147 -0.2369 -0.6680 6 6 3.9657 2.1499 -1.3911 7 6 4.3941 1.5956 1.0071 8 6 2.2425 -1.2740 0.0006 9 8 2.4267 -1.8701 -1.0433 10 7 2.7123 -1.7803 1.1578 11 6 2.6231 -1.0073 2.4041 12 6 4.0165 -0.9201 3.0346 13 6 4.5834 -2.3316 3.2061 14 6 4.7102 -3.0054 1.8379 15 1 5.3601 -2.4091 1.1976 16 6 5.2970 -4.3829 2.0079 17 1 5.5565 -4.7414 2.9931 18 6 5.5026 -5.1856 0.9059 19 7 5.1861 -4.7492 -0.2937 20 14 6.2307 -6.8929 1.1167 21 1 5.3458 -7.7039 1.9911 22 1 6.3502 -7.5474 -0.2109 23 1 7.5754 -6.7844 1.7374 24 6 3.3231 -3.1161 1.1972 25 1 -0.3633 -0.0893 1.0238 26 1 -0.3634 0.9313 -0.4345 27 1 -0.3634 -0.8419 -0.5893 28 1 1.6485 2.0776 0.1877 29 1 3.5163 -0.5855 -1.5097 30 1 5.1652 -0.2060 -0.9572 31 1 3.9895 -0.9181 0.1736 32 1 3.6389 3.1488 -1.1019 33 1 5.0392 2.1599 -1.5804 34 1 3.4399 1.8432 -2.2953 35 1 4.1734 0.8939 1.8115 36 1 5.4675 1.6048 0.8177 37 1 4.0673 2.5944 1.2964 38 1 2.2571 -0.0039 2.1864 39 1 1.9404 -1.5037 3.0938 40 1 4.6742 -0.3425 2.3849 41 1 3.9459 -0.4332 4.0072 42 1 3.9137 -2.9154 3.8377 43 1 5.5657 -2.2738 3.6748 44 1 5.3312 -5.3137 -1.0690 45 1 2.6994 -3.7857 1.7895 46 1 3.4188 -3.5041 0.1831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:19 Heat of formation + Delta-G solvation = -7.594058 kcal Electronic energy + Delta-G solvation = -24363.451273 eV Core-core repulsion = 21254.025244 eV Total energy + Delta-G solvation = -3109.426029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.28359 -38.64512 -37.82005 -35.30201 -34.42879 -33.26566 -31.60080 -28.61189 -28.08594 -27.57718 -27.10714 -26.32072 -23.48085 -23.26600 -20.98919 -20.63588 -18.95264 -18.33029 -17.54635 -16.97369 -16.54348 -16.11876 -15.61649 -15.40072 -15.15608 -14.77535 -14.55345 -14.41918 -14.22095 -13.91655 -13.87696 -13.57829 -13.42987 -13.17005 -13.09830 -12.87242 -12.77991 -12.53277 -12.39428 -12.27162 -12.21789 -12.06135 -11.64733 -11.62626 -11.38529 -10.99556 -10.97139 -10.89509 -10.60487 -10.50296 -9.67084 -9.17379 -8.09887 -6.27147 0.85960 1.39351 1.40705 1.48905 1.73924 2.33932 2.43650 3.17856 3.60939 3.81162 3.93802 4.09012 4.13154 4.21007 4.34176 4.38485 4.52346 4.61501 4.66520 4.73581 4.77616 4.78965 4.83420 4.84820 4.87928 4.94598 4.99058 5.06347 5.08174 5.15364 5.24071 5.25438 5.27025 5.32582 5.36112 5.47254 5.54075 5.57022 5.59489 5.71623 5.78962 5.92789 6.01857 6.34636 6.70771 6.85616 7.37411 7.43256 8.92396 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.005977 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.951752 B = 4683.523531 C = 4778.387873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.180 4.180 3 C -0.090 4.090 4 C -0.044 4.044 5 C -0.216 4.216 6 C -0.129 4.129 7 C -0.156 4.156 8 C 0.565 3.435 9 O -0.597 6.597 10 N -0.613 5.613 11 C 0.104 3.896 12 C -0.140 4.140 13 C -0.105 4.105 14 C 0.043 3.957 15 H -0.012 1.012 16 C -0.537 4.537 17 H 0.061 0.939 18 C 0.011 3.989 19 N -0.912 5.912 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.269 1.269 24 C 0.126 3.874 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.048 0.952 28 H 0.167 0.833 29 H 0.064 0.936 30 H 0.020 0.980 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.258 0.742 45 H 0.032 0.968 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.104 16.411 5.994 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.182 4.182 3 C -0.109 4.109 4 C -0.044 4.044 5 C -0.273 4.273 6 C -0.186 4.186 7 C -0.213 4.213 8 C 0.359 3.641 9 O -0.480 6.480 10 N -0.344 5.344 11 C -0.018 4.018 12 C -0.177 4.177 13 C -0.143 4.143 14 C 0.024 3.976 15 H 0.006 0.994 16 C -0.576 4.576 17 H 0.079 0.921 18 C -0.189 4.189 19 N -0.550 5.550 20 Si 0.780 3.220 21 H -0.192 1.192 22 H -0.216 1.216 23 H -0.194 1.194 24 C 0.004 3.996 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.185 0.815 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.022 16.031 5.297 18.692 hybrid contribution 0.965 -1.765 -0.644 2.113 sum -7.057 14.265 4.653 16.582 Atomic orbital electron populations 1.20684 0.87618 1.03620 1.03393 1.21625 0.98134 0.91700 1.06788 1.23599 0.94566 0.97488 0.95197 1.19738 0.93090 0.94354 0.97175 1.23759 1.00001 0.99038 1.04544 1.21763 1.01123 0.98976 0.96748 1.22259 0.99441 1.03029 0.96537 1.18662 0.76379 0.86149 0.82959 1.90771 1.60591 1.63852 1.32767 1.48562 1.58558 1.18497 1.08800 1.21943 0.97936 0.97050 0.84860 1.22233 0.96295 0.97142 1.02057 1.21520 0.99946 0.95664 0.97157 1.18844 0.91545 0.94529 0.92708 0.99385 1.21500 1.41882 1.00932 0.93281 0.92126 1.25873 0.95836 1.02160 0.95011 1.70098 1.48203 1.38025 0.98710 0.85658 0.79266 0.80007 0.77025 1.19201 1.21598 1.19385 1.21663 0.93984 0.81069 1.02878 0.89418 0.88293 0.93329 0.81520 0.91747 0.96087 0.88588 0.89488 0.93104 0.93742 0.90839 0.93586 0.89474 0.87632 0.90676 0.91329 0.87788 0.92680 0.93104 0.93307 0.94982 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.04 71.23 0.72 -1.33 16 2 C -0.18 -5.14 4.07 -18.70 -0.08 -5.21 16 3 C -0.09 -2.08 7.43 24.52 0.18 -1.90 16 4 C -0.04 -1.19 0.98 -52.93 -0.05 -1.25 16 5 C -0.22 -8.84 6.33 71.98 0.46 -8.38 16 6 C -0.13 -3.01 8.46 71.98 0.61 -2.40 16 7 C -0.16 -3.62 8.28 71.98 0.60 -3.03 16 8 C 0.57 23.15 3.70 86.57 0.32 23.47 16 9 O -0.60 -31.26 13.60 -4.07 -0.06 -31.32 16 10 N -0.61 -24.56 1.68 -824.95 -1.39 -25.95 16 11 C 0.10 3.01 5.74 86.36 0.50 3.50 16 12 C -0.14 -4.10 5.23 30.68 0.16 -3.94 16 13 C -0.11 -4.07 5.10 30.63 0.16 -3.92 16 14 C 0.04 2.18 2.07 -11.46 -0.02 2.16 16 15 H -0.01 -0.70 7.75 -2.39 -0.02 -0.72 16 16 C -0.54 -29.96 8.56 25.60 0.22 -29.74 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 18 C 0.01 0.62 5.30 84.66 0.45 1.06 16 19 N -0.91 -56.40 11.39 21.45 0.24 -56.16 16 20 Si 0.95 44.99 29.54 68.60 2.03 47.01 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.13 6.38 5.12 86.36 0.44 6.82 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 26 H 0.10 1.48 8.04 -2.39 -0.02 1.46 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 29 H 0.06 3.04 5.18 -15.30 -0.08 2.96 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 4.27 2.91 -3.31 -0.01 4.26 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.78 2.99 -2.38 -0.01 1.78 16 36 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.11 2.42 5.21 -2.39 -0.01 2.41 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 2.15 5.31 -2.38 -0.01 2.14 16 41 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 4.63 5.11 -2.39 -0.01 4.62 16 Total: -1.00 -74.04 336.38 6.36 -67.68 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.88 Total: 22.81 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 4.65 Total: -24.09 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -1.14 Total: -82.10 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.06 Total: -31.32 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.04 6.36 -67.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.089 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds