Wall clock time and date at job start Tue Mar 31 2020 01:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33000 * 119.99978 * 2 1 4 4 C 1.50693 * 119.99713 * 341.32662 * 3 2 1 5 5 C 1.53004 * 109.47013 * 71.65165 * 4 3 2 6 6 C 1.53004 * 109.47191 * 191.64546 * 4 3 2 7 7 C 1.52998 * 109.47580 * 311.65010 * 4 3 2 8 8 C 1.47107 * 119.99949 * 179.97438 * 2 1 3 9 9 O 1.21610 * 119.99683 * 155.04964 * 8 2 1 10 10 N 1.34773 * 120.00173 * 335.04664 * 8 2 1 11 11 C 1.46931 * 120.63126 * 350.30395 * 10 8 2 12 12 C 1.53190 * 108.77436 * 233.63162 * 11 10 8 13 13 C 1.53046 * 109.30976 * 305.36219 * 12 11 10 14 14 C 1.53035 * 109.53956 * 61.36820 * 13 12 11 15 15 H 1.09002 * 109.50049 * 58.58474 * 14 13 12 16 16 C 1.50700 * 109.50011 * 178.68522 * 14 13 12 17 17 H 1.07995 * 119.99803 * 359.97438 * 16 14 13 18 18 C 1.37875 * 120.00155 * 179.97438 * 16 14 13 19 19 N 1.31518 * 119.99890 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00036 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47272 * 60.00183 * 20 18 16 22 22 H 1.48503 * 109.47333 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47246 * 300.00116 * 20 18 16 24 24 C 1.46920 * 120.63108 * 170.31950 * 10 8 2 25 25 H 1.09000 * 109.47695 * 275.72605 * 1 2 3 26 26 H 1.08996 * 109.47495 * 35.72789 * 1 2 3 27 27 H 1.09002 * 109.47153 * 155.72322 * 1 2 3 28 28 H 1.08001 * 120.00049 * 161.33257 * 3 2 1 29 29 H 1.08992 * 109.47201 * 42.34547 * 5 4 3 30 30 H 1.09000 * 109.47067 * 162.34914 * 5 4 3 31 31 H 1.09004 * 109.46707 * 282.34539 * 5 4 3 32 32 H 1.08999 * 109.46497 * 60.00402 * 6 4 3 33 33 H 1.08997 * 109.46911 * 179.97438 * 6 4 3 34 34 H 1.08993 * 109.47051 * 300.00506 * 6 4 3 35 35 H 1.09002 * 109.47521 * 75.81969 * 7 4 3 36 36 H 1.08999 * 109.47439 * 195.82286 * 7 4 3 37 37 H 1.08999 * 109.47214 * 315.82132 * 7 4 3 38 38 H 1.08999 * 109.58868 * 113.83668 * 11 10 8 39 39 H 1.09005 * 109.69824 * 353.48254 * 11 10 8 40 40 H 1.09000 * 109.49773 * 185.41728 * 12 11 10 41 41 H 1.08997 * 109.52719 * 65.32891 * 12 11 10 42 42 H 1.08999 * 109.46183 * 181.39247 * 13 12 11 43 43 H 1.09005 * 109.46065 * 301.34513 * 13 12 11 44 44 H 0.97000 * 119.99727 * 179.97438 * 19 18 16 45 45 H 1.08994 * 109.58928 * 246.16061 * 24 10 8 46 46 H 1.08998 * 109.58653 * 6.58811 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4779 2.4225 -0.4178 5 6 0.4805 2.8386 0.6652 6 6 2.5151 3.5310 -0.6090 7 6 0.7335 2.1881 -1.7338 8 6 2.2425 -1.2740 0.0006 9 8 3.3735 -1.3233 -0.4437 10 7 1.6630 -2.3865 0.4935 11 6 0.3900 -2.3071 1.2229 12 6 0.5573 -2.9927 2.5826 13 6 1.0725 -4.4182 2.3706 14 6 2.4383 -4.3717 1.6819 15 1 3.1353 -3.7996 2.2943 16 6 2.9594 -5.7743 1.5027 17 1 2.3753 -6.6153 1.8460 18 6 4.1818 -5.9840 0.9005 19 7 4.8934 -4.9598 0.4828 20 14 4.8280 -7.7226 0.6790 21 1 3.8784 -8.5010 -0.1562 22 1 6.1533 -7.6768 0.0106 23 1 4.9663 -8.3722 2.0072 24 6 2.2923 -3.7016 0.3119 25 1 -0.3634 0.1025 1.0225 26 1 -0.3634 0.8342 -0.6001 27 1 -0.3633 -0.9368 -0.4225 28 1 3.2093 1.1764 0.2994 29 1 0.9332 2.7033 1.6474 30 1 0.2131 3.8866 0.5296 31 1 -0.4155 2.2224 0.5900 32 1 3.2256 3.2345 -1.3805 33 1 2.0131 4.4499 -0.9116 34 1 3.0453 3.6979 0.3285 35 1 -0.1750 1.6175 -1.5408 36 1 0.4720 3.1479 -2.1793 37 1 1.3732 1.6318 -2.4190 38 1 -0.3900 -2.8117 0.6527 39 1 0.1162 -1.2626 1.3716 40 1 -0.4046 -3.0259 3.0941 41 1 1.2717 -2.4338 3.1870 42 1 1.1689 -4.9167 3.3351 43 1 0.3694 -4.9693 1.7460 44 1 5.7535 -5.1073 0.0595 45 1 1.6675 -4.3199 -0.3325 46 1 3.2762 -3.5766 -0.1403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:25 Heat of formation + Delta-G solvation = -11.330780 kcal Electronic energy + Delta-G solvation = -23105.657855 eV Core-core repulsion = 19996.069790 eV Total energy + Delta-G solvation = -3109.588065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -39.87655 -38.11226 -36.51932 -33.77484 -32.49632 -31.54133 -29.67703 -28.26449 -27.37928 -26.69172 -25.07795 -24.82138 -21.86223 -21.73058 -19.69195 -18.61373 -17.62984 -16.42092 -15.78635 -15.68686 -15.05054 -14.60734 -14.52608 -14.25648 -14.12221 -13.73384 -13.15672 -13.06133 -12.81876 -12.55884 -12.39368 -12.27350 -12.15268 -12.08254 -11.77708 -11.70910 -11.51411 -11.04223 -10.94912 -10.84655 -10.81263 -10.54372 -10.36312 -10.21505 -10.04140 -9.77674 -9.19417 -9.05653 -8.84001 -8.60149 -8.38689 -7.61887 -5.95001 -4.04478 1.70232 3.33979 3.39858 3.41195 3.75223 3.88937 4.45830 4.63557 4.67318 4.87507 5.05765 5.15904 5.27472 5.34207 5.38908 5.40888 5.50444 5.52995 5.58568 5.65953 5.71512 5.75777 5.76241 5.81624 5.87648 6.02500 6.06269 6.07962 6.22312 6.24104 6.36626 6.38451 6.56282 6.66744 6.70957 6.78079 6.92824 7.03093 7.23377 7.39668 7.69591 7.93025 8.05621 8.37094 8.44119 8.96593 9.02221 9.60877 11.09947 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.004393 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.528899 B = 6372.405228 C = 7037.906572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C -0.081 4.081 4 C -0.040 4.040 5 C -0.146 4.146 6 C -0.139 4.139 7 C -0.157 4.157 8 C 0.541 3.459 9 O -0.537 6.537 10 N -0.601 5.601 11 C 0.088 3.912 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.264 0.736 45 H 0.040 0.960 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.805 15.132 -0.538 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.100 4.100 4 C -0.040 4.040 5 C -0.203 4.203 6 C -0.197 4.197 7 C -0.213 4.213 8 C 0.329 3.671 9 O -0.415 6.415 10 N -0.333 5.333 11 C -0.036 4.036 12 C -0.173 4.173 13 C -0.148 4.148 14 C 0.022 3.978 15 H 0.046 0.954 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.008 4.008 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.020 15.112 -0.875 18.724 hybrid contribution 0.447 -1.146 -0.018 1.230 sum -10.573 13.966 -0.893 17.539 Atomic orbital electron populations 1.21863 0.91934 1.04002 1.02092 1.21536 0.96111 0.93655 1.05970 1.23373 0.99694 0.92425 0.94539 1.19648 0.95507 0.93165 0.95692 1.22085 0.98798 1.01147 0.98302 1.21896 0.98502 0.97204 1.02062 1.22322 1.01068 1.01754 0.96146 1.18450 0.85779 0.83857 0.78971 1.90803 1.17511 1.85533 1.47676 1.48378 1.22840 1.08682 1.53430 1.22339 0.86315 1.02020 0.92877 1.21967 1.00278 0.98697 0.96366 1.21624 0.99432 0.93524 1.00229 1.18946 0.91017 0.95993 0.91879 0.95385 1.21050 1.03423 0.91782 1.39851 0.92483 1.25058 0.96743 0.96843 0.95371 1.69899 1.12958 1.29492 1.39331 0.86664 0.78118 0.84957 0.78293 1.20266 1.21265 1.20302 1.22252 0.99609 0.78574 1.00407 0.90476 0.89088 0.91488 0.86328 0.92386 0.92569 0.91716 0.92282 0.92523 0.92434 0.90460 0.92527 0.92074 0.92516 0.88769 0.92397 0.92300 0.93181 0.93303 0.92637 0.94197 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 6.18 36.00 0.22 -1.41 16 2 C -0.17 -2.61 5.18 -102.84 -0.53 -3.14 16 3 C -0.08 -1.13 7.78 -36.13 -0.28 -1.41 16 4 C -0.04 -0.41 0.75 -155.66 -0.12 -0.53 16 5 C -0.15 -1.25 8.20 37.16 0.30 -0.95 16 6 C -0.14 -1.30 8.29 37.16 0.31 -0.99 16 7 C -0.16 -1.50 7.92 37.16 0.29 -1.21 16 8 C 0.54 11.41 7.42 -12.66 -0.09 11.32 16 9 O -0.54 -13.83 16.09 5.27 0.08 -13.75 16 10 N -0.60 -12.53 2.97 -174.16 -0.52 -13.05 16 11 C 0.09 1.41 4.71 -3.71 -0.02 1.39 16 12 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 13 C -0.11 -2.26 5.11 -26.69 -0.14 -2.40 16 14 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.48 8.56 -34.44 -0.29 -14.78 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -26.29 11.40 55.43 0.63 -25.65 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.11 2.80 5.41 -3.71 -0.02 2.78 16 25 H 0.08 0.75 6.41 -51.93 -0.33 0.42 16 26 H 0.09 0.85 2.52 -51.93 -0.13 0.72 16 27 H 0.07 0.79 6.52 -51.93 -0.34 0.46 16 28 H 0.12 1.85 7.91 -52.49 -0.42 1.44 16 29 H 0.06 0.52 8.01 -51.93 -0.42 0.11 16 30 H 0.06 0.41 8.01 -51.93 -0.42 -0.01 16 31 H 0.06 0.50 5.51 -51.93 -0.29 0.22 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.68 4.62 -51.93 -0.24 0.44 16 36 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 37 H 0.06 0.68 8.04 -51.93 -0.42 0.27 16 38 H 0.06 0.84 7.99 -51.93 -0.42 0.43 16 39 H 0.09 1.25 3.42 -51.93 -0.18 1.07 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.12 3.55 5.13 -51.93 -0.27 3.28 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -32.17 341.93 -8.11 -40.28 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.62 Total: 1.65 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.83 Total: -11.22 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.11 Total: -38.70 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.08 Total: -13.75 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.17 -8.11 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.949 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds