Wall clock time and date at job start Tue Mar 31 2020 01:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33000 * 119.99978 * 2 1 4 4 C 1.50693 * 119.99713 * 341.32662 * 3 2 1 5 5 C 1.53004 * 109.47013 * 71.65165 * 4 3 2 6 6 C 1.53004 * 109.47191 * 191.64546 * 4 3 2 7 7 C 1.52998 * 109.47580 * 311.65010 * 4 3 2 8 8 C 1.47107 * 119.99949 * 179.97438 * 2 1 3 9 9 O 1.21610 * 119.99683 * 155.04964 * 8 2 1 10 10 N 1.34773 * 120.00173 * 335.04664 * 8 2 1 11 11 C 1.46931 * 120.63126 * 350.30395 * 10 8 2 12 12 C 1.53190 * 108.77436 * 233.63162 * 11 10 8 13 13 C 1.53046 * 109.30976 * 305.36219 * 12 11 10 14 14 C 1.53035 * 109.53956 * 61.36820 * 13 12 11 15 15 H 1.09002 * 109.50049 * 58.58474 * 14 13 12 16 16 C 1.50700 * 109.50011 * 178.68522 * 14 13 12 17 17 H 1.07995 * 119.99803 * 359.97438 * 16 14 13 18 18 C 1.37875 * 120.00155 * 179.97438 * 16 14 13 19 19 N 1.31518 * 119.99890 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00036 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47272 * 60.00183 * 20 18 16 22 22 H 1.48503 * 109.47333 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47246 * 300.00116 * 20 18 16 24 24 C 1.46920 * 120.63108 * 170.31950 * 10 8 2 25 25 H 1.09000 * 109.47695 * 275.72605 * 1 2 3 26 26 H 1.08996 * 109.47495 * 35.72789 * 1 2 3 27 27 H 1.09002 * 109.47153 * 155.72322 * 1 2 3 28 28 H 1.08001 * 120.00049 * 161.33257 * 3 2 1 29 29 H 1.08992 * 109.47201 * 42.34547 * 5 4 3 30 30 H 1.09000 * 109.47067 * 162.34914 * 5 4 3 31 31 H 1.09004 * 109.46707 * 282.34539 * 5 4 3 32 32 H 1.08999 * 109.46497 * 60.00402 * 6 4 3 33 33 H 1.08997 * 109.46911 * 179.97438 * 6 4 3 34 34 H 1.08993 * 109.47051 * 300.00506 * 6 4 3 35 35 H 1.09002 * 109.47521 * 75.81969 * 7 4 3 36 36 H 1.08999 * 109.47439 * 195.82286 * 7 4 3 37 37 H 1.08999 * 109.47214 * 315.82132 * 7 4 3 38 38 H 1.08999 * 109.58868 * 113.83668 * 11 10 8 39 39 H 1.09005 * 109.69824 * 353.48254 * 11 10 8 40 40 H 1.09000 * 109.49773 * 185.41728 * 12 11 10 41 41 H 1.08997 * 109.52719 * 65.32891 * 12 11 10 42 42 H 1.08999 * 109.46183 * 181.39247 * 13 12 11 43 43 H 1.09005 * 109.46065 * 301.34513 * 13 12 11 44 44 H 0.97000 * 119.99727 * 179.97438 * 19 18 16 45 45 H 1.08994 * 109.58928 * 246.16061 * 24 10 8 46 46 H 1.08998 * 109.58653 * 6.58811 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4779 2.4225 -0.4178 5 6 0.4805 2.8386 0.6652 6 6 2.5151 3.5310 -0.6090 7 6 0.7335 2.1881 -1.7338 8 6 2.2425 -1.2740 0.0006 9 8 3.3735 -1.3233 -0.4437 10 7 1.6630 -2.3865 0.4935 11 6 0.3900 -2.3071 1.2229 12 6 0.5573 -2.9927 2.5826 13 6 1.0725 -4.4182 2.3706 14 6 2.4383 -4.3717 1.6819 15 1 3.1353 -3.7996 2.2943 16 6 2.9594 -5.7743 1.5027 17 1 2.3753 -6.6153 1.8460 18 6 4.1818 -5.9840 0.9005 19 7 4.8934 -4.9598 0.4828 20 14 4.8280 -7.7226 0.6790 21 1 3.8784 -8.5010 -0.1562 22 1 6.1533 -7.6768 0.0106 23 1 4.9663 -8.3722 2.0072 24 6 2.2923 -3.7016 0.3119 25 1 -0.3634 0.1025 1.0225 26 1 -0.3634 0.8342 -0.6001 27 1 -0.3633 -0.9368 -0.4225 28 1 3.2093 1.1764 0.2994 29 1 0.9332 2.7033 1.6474 30 1 0.2131 3.8866 0.5296 31 1 -0.4155 2.2224 0.5900 32 1 3.2256 3.2345 -1.3805 33 1 2.0131 4.4499 -0.9116 34 1 3.0453 3.6979 0.3285 35 1 -0.1750 1.6175 -1.5408 36 1 0.4720 3.1479 -2.1793 37 1 1.3732 1.6318 -2.4190 38 1 -0.3900 -2.8117 0.6527 39 1 0.1162 -1.2626 1.3716 40 1 -0.4046 -3.0259 3.0941 41 1 1.2717 -2.4338 3.1870 42 1 1.1689 -4.9167 3.3351 43 1 0.3694 -4.9693 1.7460 44 1 5.7535 -5.1073 0.0595 45 1 1.6675 -4.3199 -0.3325 46 1 3.2762 -3.5766 -0.1403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:24 Heat of formation + Delta-G solvation = -30.739269 kcal Electronic energy + Delta-G solvation = -23106.499470 eV Core-core repulsion = 19996.069790 eV Total energy + Delta-G solvation = -3110.429680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35450 -39.24522 -38.21509 -35.53338 -34.03669 -33.10833 -31.45405 -29.20547 -28.05475 -27.73051 -26.89459 -26.47404 -23.41563 -23.24264 -21.18207 -20.02802 -18.90779 -18.40761 -17.41510 -17.01922 -16.59546 -16.21828 -15.91551 -15.35824 -15.20904 -14.92081 -14.77123 -14.53672 -14.30287 -14.03011 -13.88367 -13.54702 -13.21258 -13.13498 -13.00699 -12.86055 -12.65615 -12.60106 -12.31810 -12.26838 -12.13815 -11.92547 -11.77541 -11.68424 -11.57779 -11.17662 -11.09673 -10.95334 -10.56366 -10.41137 -9.80334 -9.33070 -8.12531 -6.31296 0.44355 1.38172 1.40509 1.48895 2.20284 2.31052 2.41303 3.14910 3.58194 3.82933 3.98657 4.03485 4.12397 4.17518 4.21155 4.37557 4.44995 4.49536 4.58379 4.69391 4.76918 4.80181 4.82249 4.87657 4.92817 4.95791 4.99650 5.07081 5.07972 5.16001 5.21952 5.24186 5.27281 5.27788 5.33979 5.51424 5.52308 5.52954 5.55747 5.64765 5.77751 5.88413 5.98283 6.30735 6.72688 6.82317 7.34108 7.39926 8.90531 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.004393 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.528899 B = 6372.405228 C = 7037.906572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.182 4.182 3 C -0.068 4.068 4 C -0.037 4.037 5 C -0.144 4.144 6 C -0.141 4.141 7 C -0.155 4.155 8 C 0.527 3.473 9 O -0.604 6.604 10 N -0.605 5.605 11 C 0.081 3.919 12 C -0.129 4.129 13 C -0.105 4.105 14 C 0.039 3.961 15 H -0.020 1.020 16 C -0.539 4.539 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.917 5.917 20 Si 0.961 3.039 21 H -0.265 1.265 22 H -0.289 1.289 23 H -0.267 1.267 24 C 0.123 3.877 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.259 0.741 45 H 0.036 0.964 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.592 16.396 0.040 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C -0.088 4.088 4 C -0.037 4.037 5 C -0.200 4.200 6 C -0.198 4.198 7 C -0.211 4.211 8 C 0.318 3.682 9 O -0.487 6.487 10 N -0.335 5.335 11 C -0.039 4.039 12 C -0.167 4.167 13 C -0.143 4.143 14 C 0.020 3.980 15 H -0.002 1.002 16 C -0.577 4.577 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.785 3.215 21 H -0.190 1.190 22 H -0.215 1.215 23 H -0.192 1.192 24 C 0.001 3.999 25 H 0.121 0.879 26 H 0.135 0.865 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.125 0.875 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.868 16.375 -0.265 22.119 hybrid contribution 1.697 -1.489 -0.187 2.265 sum -13.171 14.886 -0.452 19.882 Atomic orbital electron populations 1.21937 0.88120 1.05135 1.04171 1.21414 0.98278 0.90565 1.08252 1.23646 0.98524 0.94312 0.92273 1.19736 0.96060 0.90991 0.96885 1.22082 0.98362 1.02748 0.96854 1.21930 0.98318 0.97959 1.01632 1.22325 1.00813 1.02937 0.95071 1.19510 0.85332 0.85734 0.77587 1.90758 1.20689 1.86713 1.50529 1.48432 1.24336 1.07042 1.53712 1.22798 0.84240 1.04767 0.92125 1.21962 1.02138 0.95578 0.97012 1.21519 0.96455 0.96672 0.99640 1.18887 0.93057 0.94295 0.91809 1.00194 1.21517 1.03738 0.93123 1.39327 0.91829 1.25959 0.97160 1.00980 0.95065 1.70125 1.13104 1.31962 1.40416 0.85572 0.77351 0.79872 0.78661 1.18965 1.21488 1.19180 1.21674 0.97596 0.80978 0.99673 0.87872 0.86494 0.91637 0.89362 0.92994 0.90492 0.90227 0.93769 0.90021 0.92609 0.89146 0.90178 0.94449 0.90193 0.85098 0.87466 0.93706 0.93106 0.92299 0.93206 0.94547 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 6.18 71.23 0.44 -2.19 16 2 C -0.18 -5.49 5.18 -18.70 -0.10 -5.59 16 3 C -0.07 -1.88 7.78 24.52 0.19 -1.69 16 4 C -0.04 -0.67 0.75 -52.93 -0.04 -0.70 16 5 C -0.14 -1.86 8.20 71.98 0.59 -1.27 16 6 C -0.14 -2.40 8.29 71.98 0.60 -1.81 16 7 C -0.16 -2.51 7.92 71.98 0.57 -1.94 16 8 C 0.53 23.25 7.42 86.57 0.64 23.89 16 9 O -0.60 -33.82 16.09 -4.06 -0.07 -33.89 16 10 N -0.60 -25.79 2.97 -823.17 -2.44 -28.23 16 11 C 0.08 2.41 4.71 86.36 0.41 2.82 16 12 C -0.13 -3.99 6.08 30.67 0.19 -3.81 16 13 C -0.11 -4.23 5.11 30.62 0.16 -4.08 16 14 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 15 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 16 C -0.54 -30.81 8.56 25.60 0.22 -30.59 16 17 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 18 C 0.01 0.44 5.30 84.65 0.45 0.89 16 19 N -0.92 -58.31 11.40 21.45 0.24 -58.07 16 20 Si 0.96 45.53 29.54 68.60 2.03 47.55 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 C 0.12 6.52 5.41 86.37 0.47 6.99 16 25 H 0.10 1.44 6.41 -2.39 -0.02 1.42 16 26 H 0.12 1.64 2.52 -2.39 -0.01 1.63 16 27 H 0.06 1.30 6.52 -2.39 -0.02 1.29 16 28 H 0.09 2.96 7.91 -2.91 -0.02 2.94 16 29 H 0.05 0.76 8.01 -2.39 -0.02 0.74 16 30 H 0.08 0.73 8.01 -2.39 -0.02 0.71 16 31 H 0.08 0.81 5.51 -2.38 -0.01 0.79 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.20 4.62 -2.39 -0.01 1.19 16 36 H 0.08 0.96 8.04 -2.39 -0.02 0.94 16 37 H 0.04 0.79 8.04 -2.39 -0.02 0.77 16 38 H 0.08 2.06 7.99 -2.39 -0.02 2.04 16 39 H 0.13 2.94 3.42 -2.38 -0.01 2.94 16 40 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 45 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 4.58 5.13 -2.39 -0.01 4.57 16 Total: -1.00 -78.83 341.93 5.47 -73.37 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.95 Total: 16.30 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.75 Total: -17.04 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -2.20 Total: -86.30 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.07 Total: -33.89 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -78.83 5.47 -73.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.628 kcal (2) G-P(sol) polarization free energy of solvation -78.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds