Wall clock time and date at job start Tue Mar 31 2020 02:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32988 * 119.99908 * 2 1 4 4 C 1.47101 * 119.99989 * 187.67820 * 3 2 1 5 5 O 1.21606 * 120.00007 * 7.21852 * 4 3 2 6 6 N 1.34781 * 119.99705 * 187.21909 * 4 3 2 7 7 C 1.46924 * 120.63161 * 354.92692 * 6 4 3 8 8 C 1.53190 * 108.77388 * 126.39178 * 7 6 4 9 9 C 1.53040 * 109.31591 * 54.63578 * 8 7 6 10 10 C 1.53041 * 109.53433 * 298.62988 * 9 8 7 11 11 H 1.09001 * 109.50351 * 301.38702 * 10 9 8 12 12 C 1.50703 * 109.49935 * 181.31544 * 10 9 8 13 13 H 1.08004 * 119.99650 * 0.07178 * 12 10 9 14 14 C 1.37873 * 120.00146 * 179.78881 * 12 10 9 15 15 N 1.31517 * 120.00001 * 0.28427 * 14 12 10 16 16 Si 1.86801 * 119.99870 * 180.27597 * 14 12 10 17 17 H 1.48495 * 109.46949 * 60.00629 * 16 14 12 18 18 H 1.48499 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47129 * 300.00153 * 16 14 12 20 20 C 1.46940 * 120.60021 * 174.90304 * 6 4 3 21 21 C 1.50695 * 119.99976 * 179.97438 * 2 1 3 22 22 C 1.52998 * 109.47236 * 229.64068 * 21 2 1 23 23 C 1.53003 * 109.47471 * 349.64214 * 21 2 1 24 24 C 1.53005 * 109.47194 * 109.64303 * 21 2 1 25 25 H 1.08999 * 109.47348 * 90.00515 * 1 2 3 26 26 H 1.09006 * 109.46977 * 210.00309 * 1 2 3 27 27 H 1.08994 * 109.47273 * 329.99682 * 1 2 3 28 28 H 1.07998 * 120.00070 * 7.67389 * 3 2 1 29 29 H 1.08997 * 109.58862 * 6.60032 * 7 6 4 30 30 H 1.09006 * 109.70048 * 246.24663 * 7 6 4 31 31 H 1.08998 * 109.49913 * 294.67818 * 8 7 6 32 32 H 1.09007 * 109.49420 * 174.58478 * 8 7 6 33 33 H 1.09001 * 109.46158 * 178.61453 * 9 8 7 34 34 H 1.08994 * 109.46075 * 58.65086 * 9 8 7 35 35 H 0.97000 * 119.99915 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.55739 * 113.81129 * 20 6 4 37 37 H 1.08996 * 109.61325 * 353.37634 * 20 6 4 38 38 H 1.09001 * 109.47544 * 95.15747 * 22 21 2 39 39 H 1.09002 * 109.47613 * 215.15945 * 22 21 2 40 40 H 1.08995 * 109.47172 * 335.15730 * 22 21 2 41 41 H 1.09001 * 109.47001 * 59.99947 * 23 21 2 42 42 H 1.09004 * 109.47272 * 180.02562 * 23 21 2 43 43 H 1.09003 * 109.46891 * 299.99994 * 23 21 2 44 44 H 1.09000 * 109.47024 * 28.16203 * 24 21 2 45 45 H 1.08993 * 109.47240 * 148.16607 * 24 21 2 46 46 H 1.09000 * 109.46903 * 268.16582 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6331 1.1575 -0.1702 5 8 4.2177 0.1262 -0.4415 6 7 4.3238 2.3057 -0.0255 7 6 3.6230 3.5785 0.1923 8 6 4.1885 4.2436 1.4511 9 6 5.7069 4.3776 1.3143 10 6 6.3331 2.9877 1.1796 11 1 6.0791 2.3878 2.0536 12 6 7.8310 3.1185 1.0774 13 1 8.2909 4.0953 1.1067 14 6 8.6146 1.9911 0.9522 15 7 8.0545 0.8016 0.9164 16 14 10.4718 2.1529 0.8333 17 1 10.9902 2.8160 2.0566 18 1 11.0791 0.8038 0.7058 19 1 10.8224 2.9675 -0.3578 20 6 5.7921 2.3075 -0.0820 21 6 2.2605 -1.3051 0.0006 22 6 3.3245 -1.2792 1.0997 23 6 1.2867 -2.4562 0.2605 24 6 2.9355 -1.5049 -1.3579 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6392 2.0828 0.1249 29 1 2.5576 3.3910 0.3253 30 1 3.7745 4.2330 -0.6662 31 1 3.9543 3.6319 2.3223 32 1 3.7454 5.2324 1.5704 33 1 6.1089 4.8728 2.1981 34 1 5.9410 4.9687 0.4290 35 1 8.6058 0.0084 0.8280 36 1 6.1227 2.8568 -0.9636 37 1 6.1577 1.2818 -0.1295 38 1 2.9281 -1.7481 2.0003 39 1 4.2067 -1.8245 0.7644 40 1 3.5968 -0.2466 1.3176 41 1 0.5287 -2.4746 -0.5226 42 1 1.8318 -3.4001 0.2613 43 1 0.8058 -2.3138 1.2283 44 1 3.1522 -0.5335 -1.8023 45 1 3.8646 -2.0587 -1.2240 46 1 2.2703 -2.0649 -2.0152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:32 Heat of formation + Delta-G solvation = -6.945168 kcal Electronic energy + Delta-G solvation = -23627.966563 eV Core-core repulsion = 20518.568672 eV Total energy + Delta-G solvation = -3109.397891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.16544 -37.87565 -35.94710 -33.45011 -32.33324 -31.50304 -29.87103 -28.57693 -26.77296 -26.24135 -25.02648 -24.24459 -22.00989 -21.53733 -19.92900 -18.47375 -17.04421 -16.73890 -16.08791 -15.30870 -14.85001 -14.54870 -14.10150 -14.06178 -13.80053 -13.60336 -13.15819 -12.92678 -12.75519 -12.57714 -12.38522 -12.27866 -12.05755 -11.79811 -11.63731 -11.41925 -10.95759 -10.85851 -10.63244 -10.49547 -10.42380 -10.36544 -10.27382 -10.18572 -10.11170 -9.76490 -9.09159 -9.01334 -8.74533 -8.55406 -8.37225 -7.50833 -5.97257 -4.05563 1.75472 3.33159 3.39090 3.40395 3.88072 3.98208 4.44939 4.79050 4.88902 5.19264 5.33034 5.33735 5.39557 5.47536 5.55234 5.57716 5.62450 5.63391 5.76007 5.87123 5.93102 6.03717 6.06615 6.16215 6.23337 6.27328 6.32893 6.36243 6.52906 6.59357 6.63843 6.71911 6.75831 6.82051 6.92971 6.99457 7.02068 7.09115 7.24557 7.42683 7.68827 7.92344 8.04869 8.39511 8.43963 8.96567 9.07537 9.59671 11.07908 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.005536 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.508003 B = 5056.434283 C = 6065.259658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.036 4.036 3 C -0.227 4.227 4 C 0.527 3.473 5 O -0.518 6.518 6 N -0.604 5.604 7 C 0.108 3.892 8 C -0.134 4.134 9 C -0.111 4.111 10 C 0.041 3.959 11 H 0.028 0.972 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.880 5.880 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.115 3.885 21 C -0.028 4.028 22 C -0.117 4.117 23 C -0.141 4.141 24 C -0.109 4.109 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.263 0.737 36 H 0.037 0.963 37 H 0.123 0.877 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.375 -0.282 -1.708 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.038 4.038 3 C -0.247 4.247 4 C 0.317 3.683 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.016 4.016 8 C -0.172 4.172 9 C -0.148 4.148 10 C 0.022 3.978 11 H 0.046 0.954 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.517 5.517 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.005 4.005 21 C -0.028 4.028 22 C -0.174 4.174 23 C -0.198 4.198 24 C -0.166 4.166 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.141 0.859 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.987 -1.017 -1.872 15.138 hybrid contribution 0.987 0.363 0.009 1.052 sum -14.000 -0.653 -1.863 14.139 Atomic orbital electron populations 1.21043 0.91870 1.02951 1.02435 1.22528 0.95139 0.94782 0.91314 1.22610 0.94752 0.98183 1.09193 1.18304 0.87545 0.83602 0.78808 1.90904 1.71291 1.30368 1.47198 1.48415 1.09084 1.06017 1.70148 1.21659 0.95995 0.86157 0.97758 1.21948 0.98456 0.99243 0.97547 1.21622 0.92378 1.00468 1.00359 1.18958 0.94509 0.90274 0.94085 0.95436 1.21046 0.90750 0.92777 1.51431 0.92538 1.25030 0.98547 0.95412 0.94920 1.69876 1.35253 0.97534 1.49043 0.86673 0.85734 0.77121 0.78558 1.20329 1.21284 1.20288 1.22216 0.73850 1.06066 0.98356 1.19572 0.94444 0.90705 0.98048 1.22151 0.97232 1.03376 0.94682 1.22072 0.98723 0.98333 1.00709 1.21936 0.98604 1.02164 0.93900 0.90777 0.90853 0.91678 0.86034 0.90993 0.92409 0.92210 0.92446 0.93169 0.93291 0.92684 0.94433 0.85946 0.95642 0.91824 0.91389 0.92922 0.92616 0.92944 0.91039 0.92245 0.95839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.31 36.01 0.34 -0.93 16 2 C -0.04 -0.50 4.92 -101.17 -0.50 -0.99 16 3 C -0.23 -3.48 8.40 -37.81 -0.32 -3.80 16 4 C 0.53 10.32 5.64 -12.66 -0.07 10.25 16 5 O -0.52 -11.42 8.02 5.27 0.04 -11.37 16 6 N -0.60 -12.14 2.97 -174.15 -0.52 -12.66 16 7 C 0.11 1.73 6.35 -3.71 -0.02 1.70 16 8 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 9 C -0.11 -2.23 5.11 -26.69 -0.14 -2.36 16 10 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 11 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 12 C -0.52 -14.19 8.56 -34.44 -0.29 -14.48 16 13 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.77 5.31 -17.82 -0.09 1.67 16 15 N -0.88 -25.49 11.40 55.43 0.63 -24.86 16 16 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 C 0.12 2.80 5.39 -3.70 -0.02 2.78 16 21 C -0.03 -0.42 0.75 -155.66 -0.12 -0.53 16 22 C -0.12 -2.10 7.58 37.16 0.28 -1.82 16 23 C -0.14 -1.69 6.77 37.16 0.25 -1.44 16 24 C -0.11 -1.78 7.54 37.16 0.28 -1.50 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.66 5.90 -51.93 -0.31 0.36 16 27 H 0.06 0.57 8.06 -51.93 -0.42 0.16 16 28 H 0.12 1.56 5.87 -52.49 -0.31 1.25 16 29 H 0.07 0.95 5.31 -51.93 -0.28 0.67 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.12 3.42 5.17 -51.93 -0.27 3.16 16 38 H 0.02 0.40 7.75 -51.93 -0.40 0.00 16 39 H 0.06 1.25 6.97 -51.93 -0.36 0.89 16 40 H 0.07 1.39 4.67 -51.93 -0.24 1.15 16 41 H 0.05 0.55 7.46 -51.93 -0.39 0.16 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.58 7.44 -51.93 -0.39 0.19 16 44 H 0.07 1.31 5.52 -51.93 -0.29 1.03 16 45 H 0.06 1.06 7.12 -51.93 -0.37 0.69 16 46 H 0.02 0.32 7.79 -51.93 -0.40 -0.08 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -29.37 337.55 -8.33 -37.70 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.76 Total: 2.79 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -0.79 Total: -13.01 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.11 Total: -37.52 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.04 Total: -11.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.37 -8.33 -37.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.755 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds