Wall clock time and date at job start Tue Mar 31 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32988 * 119.99908 * 2 1 4 4 C 1.47101 * 119.99989 * 187.67820 * 3 2 1 5 5 O 1.21606 * 120.00007 * 7.21852 * 4 3 2 6 6 N 1.34781 * 119.99705 * 187.21909 * 4 3 2 7 7 C 1.46924 * 120.63161 * 354.92692 * 6 4 3 8 8 C 1.53190 * 108.77388 * 126.39178 * 7 6 4 9 9 C 1.53040 * 109.31591 * 54.63578 * 8 7 6 10 10 C 1.53041 * 109.53433 * 298.62988 * 9 8 7 11 11 H 1.09001 * 109.50351 * 301.38702 * 10 9 8 12 12 C 1.50703 * 109.49935 * 181.31544 * 10 9 8 13 13 H 1.08004 * 119.99650 * 0.07178 * 12 10 9 14 14 C 1.37873 * 120.00146 * 179.78881 * 12 10 9 15 15 N 1.31517 * 120.00001 * 0.28427 * 14 12 10 16 16 Si 1.86801 * 119.99870 * 180.27597 * 14 12 10 17 17 H 1.48495 * 109.46949 * 60.00629 * 16 14 12 18 18 H 1.48499 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47129 * 300.00153 * 16 14 12 20 20 C 1.46940 * 120.60021 * 174.90304 * 6 4 3 21 21 C 1.50695 * 119.99976 * 179.97438 * 2 1 3 22 22 C 1.52998 * 109.47236 * 229.64068 * 21 2 1 23 23 C 1.53003 * 109.47471 * 349.64214 * 21 2 1 24 24 C 1.53005 * 109.47194 * 109.64303 * 21 2 1 25 25 H 1.08999 * 109.47348 * 90.00515 * 1 2 3 26 26 H 1.09006 * 109.46977 * 210.00309 * 1 2 3 27 27 H 1.08994 * 109.47273 * 329.99682 * 1 2 3 28 28 H 1.07998 * 120.00070 * 7.67389 * 3 2 1 29 29 H 1.08997 * 109.58862 * 6.60032 * 7 6 4 30 30 H 1.09006 * 109.70048 * 246.24663 * 7 6 4 31 31 H 1.08998 * 109.49913 * 294.67818 * 8 7 6 32 32 H 1.09007 * 109.49420 * 174.58478 * 8 7 6 33 33 H 1.09001 * 109.46158 * 178.61453 * 9 8 7 34 34 H 1.08994 * 109.46075 * 58.65086 * 9 8 7 35 35 H 0.97000 * 119.99915 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.55739 * 113.81129 * 20 6 4 37 37 H 1.08996 * 109.61325 * 353.37634 * 20 6 4 38 38 H 1.09001 * 109.47544 * 95.15747 * 22 21 2 39 39 H 1.09002 * 109.47613 * 215.15945 * 22 21 2 40 40 H 1.08995 * 109.47172 * 335.15730 * 22 21 2 41 41 H 1.09001 * 109.47001 * 59.99947 * 23 21 2 42 42 H 1.09004 * 109.47272 * 180.02562 * 23 21 2 43 43 H 1.09003 * 109.46891 * 299.99994 * 23 21 2 44 44 H 1.09000 * 109.47024 * 28.16203 * 24 21 2 45 45 H 1.08993 * 109.47240 * 148.16607 * 24 21 2 46 46 H 1.09000 * 109.46903 * 268.16582 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6331 1.1575 -0.1702 5 8 4.2177 0.1262 -0.4415 6 7 4.3238 2.3057 -0.0255 7 6 3.6230 3.5785 0.1923 8 6 4.1885 4.2436 1.4511 9 6 5.7069 4.3776 1.3143 10 6 6.3331 2.9877 1.1796 11 1 6.0791 2.3878 2.0536 12 6 7.8310 3.1185 1.0774 13 1 8.2909 4.0953 1.1067 14 6 8.6146 1.9911 0.9522 15 7 8.0545 0.8016 0.9164 16 14 10.4718 2.1529 0.8333 17 1 10.9902 2.8160 2.0566 18 1 11.0791 0.8038 0.7058 19 1 10.8224 2.9675 -0.3578 20 6 5.7921 2.3075 -0.0820 21 6 2.2605 -1.3051 0.0006 22 6 3.3245 -1.2792 1.0997 23 6 1.2867 -2.4562 0.2605 24 6 2.9355 -1.5049 -1.3579 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6392 2.0828 0.1249 29 1 2.5576 3.3910 0.3253 30 1 3.7745 4.2330 -0.6662 31 1 3.9543 3.6319 2.3223 32 1 3.7454 5.2324 1.5704 33 1 6.1089 4.8728 2.1981 34 1 5.9410 4.9687 0.4290 35 1 8.6058 0.0084 0.8280 36 1 6.1227 2.8568 -0.9636 37 1 6.1577 1.2818 -0.1295 38 1 2.9281 -1.7481 2.0003 39 1 4.2067 -1.8245 0.7644 40 1 3.5968 -0.2466 1.3176 41 1 0.5287 -2.4746 -0.5226 42 1 1.8318 -3.4001 0.2613 43 1 0.8058 -2.3138 1.2283 44 1 3.1522 -0.5335 -1.8023 45 1 3.8646 -2.0587 -1.2240 46 1 2.2703 -2.0649 -2.0152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:31 Heat of formation + Delta-G solvation = -23.138293 kcal Electronic energy + Delta-G solvation = -23628.668750 eV Core-core repulsion = 20518.568672 eV Total energy + Delta-G solvation = -3110.100077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58575 -39.34582 -37.40202 -35.31602 -33.76063 -32.96537 -31.59463 -29.70848 -28.15327 -27.55441 -26.87917 -25.70488 -23.55460 -22.90349 -21.49540 -20.03612 -18.70345 -18.02483 -17.93335 -16.78219 -16.49458 -16.32338 -15.48098 -15.31570 -15.17074 -14.95906 -14.59162 -14.45466 -14.23442 -14.04049 -13.65184 -13.54362 -13.36620 -13.28806 -12.86584 -12.69850 -12.61042 -12.50969 -12.28988 -12.22575 -11.97326 -11.80234 -11.74665 -11.53338 -11.51376 -11.39058 -10.98643 -10.90931 -10.53080 -10.07467 -9.90374 -9.12434 -8.11129 -6.28057 0.55548 1.38796 1.40515 1.48572 2.35816 2.44538 2.55804 3.17130 3.66110 3.77613 3.98659 4.15765 4.19343 4.22459 4.33150 4.46301 4.48617 4.62307 4.69163 4.79737 4.80401 4.82574 4.83272 4.90177 4.92135 4.92607 4.98780 5.10587 5.17848 5.21868 5.24773 5.25615 5.26520 5.30950 5.39971 5.51886 5.55528 5.58035 5.64002 5.72325 5.87225 5.94293 6.02601 6.34953 6.84084 6.87900 7.41260 7.57124 8.91681 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.005536 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.508003 B = 5056.434283 C = 6065.259658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.019 4.019 3 C -0.243 4.243 4 C 0.513 3.487 5 O -0.557 6.557 6 N -0.614 5.614 7 C 0.104 3.896 8 C -0.125 4.125 9 C -0.106 4.106 10 C 0.041 3.959 11 H -0.016 1.016 12 C -0.539 4.539 13 H 0.059 0.941 14 C 0.011 3.989 15 N -0.912 5.912 16 Si 0.956 3.044 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.268 1.268 20 C 0.132 3.868 21 C -0.033 4.033 22 C -0.110 4.110 23 C -0.135 4.135 24 C -0.101 4.101 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.258 0.742 36 H 0.025 0.975 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.027 0.973 40 H 0.036 0.964 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.028 0.972 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.660 1.014 -1.774 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.021 4.021 3 C -0.263 4.263 4 C 0.307 3.693 5 O -0.439 6.439 6 N -0.347 5.347 7 C -0.018 4.018 8 C -0.163 4.163 9 C -0.144 4.144 10 C 0.021 3.979 11 H 0.002 0.998 12 C -0.577 4.577 13 H 0.078 0.922 14 C -0.188 4.188 15 N -0.551 5.551 16 Si 0.781 3.219 17 H -0.193 1.193 18 H -0.214 1.214 19 H -0.193 1.193 20 C 0.009 3.991 21 C -0.033 4.033 22 C -0.167 4.167 23 C -0.192 4.192 24 C -0.158 4.158 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.300 0.315 -1.931 18.404 hybrid contribution 2.035 -0.102 0.035 2.038 sum -16.264 0.213 -1.896 16.376 Atomic orbital electron populations 1.21144 0.87894 1.04772 1.04097 1.22894 0.97588 0.93195 0.88383 1.22574 0.91646 1.00391 1.11708 1.19180 0.89613 0.82768 0.77782 1.90901 1.72547 1.31695 1.48726 1.48434 1.07380 1.08211 1.70650 1.21980 0.97571 0.84248 0.98018 1.21903 0.95469 1.01563 0.97405 1.21516 0.95242 0.97067 1.00535 1.18875 0.93975 0.92633 0.92387 0.99794 1.21495 0.92501 0.92855 1.50867 0.92232 1.25869 1.03248 0.95043 0.94656 1.70084 1.36642 0.98142 1.50214 0.85642 0.80161 0.77027 0.79042 1.19294 1.21428 1.19296 1.21551 0.77202 1.02902 0.97402 1.19603 0.94452 0.93478 0.95783 1.22026 0.97233 1.00856 0.96565 1.22033 0.98302 0.96393 1.02508 1.21793 0.98042 1.00628 0.95353 0.88870 0.89317 0.89665 0.82727 0.87169 0.91002 0.93210 0.88005 0.93201 0.92759 0.93253 0.95713 0.90467 0.93996 0.95338 0.94463 0.90386 0.92992 0.91328 0.93505 0.95332 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.31 71.24 0.66 -1.15 16 2 C -0.02 -0.47 4.92 -17.62 -0.09 -0.56 16 3 C -0.24 -7.01 8.40 23.43 0.20 -6.81 16 4 C 0.51 20.75 5.64 86.57 0.49 21.24 16 5 O -0.56 -26.45 8.02 -4.05 -0.03 -26.48 16 6 N -0.61 -25.31 2.97 -823.14 -2.45 -27.75 16 7 C 0.10 3.09 6.35 86.36 0.55 3.64 16 8 C -0.13 -3.85 6.08 30.67 0.19 -3.66 16 9 C -0.11 -4.25 5.11 30.62 0.16 -4.09 16 10 C 0.04 2.11 2.25 -11.46 -0.03 2.08 16 11 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 12 C -0.54 -30.49 8.56 25.60 0.22 -30.27 16 13 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 14 C 0.01 0.65 5.31 84.65 0.45 1.10 16 15 N -0.91 -56.40 11.40 21.45 0.24 -56.15 16 16 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 C 0.13 6.80 5.39 86.36 0.47 7.26 16 21 C -0.03 -0.97 0.75 -52.93 -0.04 -1.01 16 22 C -0.11 -4.12 7.58 71.98 0.55 -3.57 16 23 C -0.14 -2.84 6.77 71.98 0.49 -2.35 16 24 C -0.10 -3.38 7.54 71.98 0.54 -2.84 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.09 1.09 5.90 -2.38 -0.01 1.08 16 27 H 0.08 0.99 8.06 -2.39 -0.02 0.97 16 28 H 0.16 3.32 5.87 -2.91 -0.02 3.30 16 29 H 0.11 2.45 5.31 -2.39 -0.01 2.43 16 30 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 4.70 5.17 -2.39 -0.01 4.69 16 38 H 0.04 1.36 7.75 -2.39 -0.02 1.34 16 39 H 0.03 1.22 6.97 -2.39 -0.02 1.20 16 40 H 0.04 1.60 4.67 -2.39 -0.01 1.59 16 41 H 0.08 1.27 7.46 -2.39 -0.02 1.26 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.24 7.44 -2.39 -0.02 1.22 16 44 H 0.05 1.78 5.52 -2.39 -0.01 1.77 16 45 H 0.03 1.09 7.12 -2.39 -0.02 1.07 16 46 H 0.05 1.37 7.79 -2.39 -0.02 1.35 16 Total: -1.00 -71.94 337.55 5.54 -66.41 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.95 Total: 17.74 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 4.80 Total: -20.98 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -2.20 Total: -83.91 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.03 Total: -26.48 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.94 5.54 -66.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.269 kcal (2) G-P(sol) polarization free energy of solvation -71.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds