Wall clock time and date at job start Tue Mar 31 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32991 * 120.00051 * 2 1 4 4 C 1.47105 * 119.99662 * 352.61794 * 3 2 1 5 5 O 1.21605 * 120.00357 * 352.66111 * 4 3 2 6 6 N 1.34785 * 119.99411 * 172.93566 * 4 3 2 7 7 C 1.46919 * 120.63226 * 5.21458 * 6 4 3 8 8 C 1.53191 * 108.77752 * 126.37141 * 7 6 4 9 9 C 1.53038 * 109.31438 * 54.62789 * 8 7 6 10 10 C 1.53035 * 109.54199 * 298.64149 * 9 8 7 11 11 H 1.09002 * 109.49821 * 301.41345 * 10 9 8 12 12 C 1.50699 * 109.49730 * 181.34702 * 10 9 8 13 13 H 1.08001 * 120.00091 * 359.97438 * 12 10 9 14 14 C 1.37884 * 119.99793 * 179.97438 * 12 10 9 15 15 N 1.31516 * 120.00083 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99984 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47143 * 89.99871 * 16 14 12 18 18 H 1.48500 * 109.47385 * 210.00220 * 16 14 12 19 19 H 1.48502 * 109.47238 * 330.00131 * 16 14 12 20 20 C 1.46927 * 120.62675 * 184.93393 * 6 4 3 21 21 C 1.50701 * 119.99876 * 179.97438 * 2 1 3 22 22 C 1.52992 * 109.46979 * 180.02562 * 21 2 1 23 23 C 1.53005 * 109.46822 * 299.99787 * 21 2 1 24 24 C 1.52993 * 109.47042 * 59.99676 * 21 2 1 25 25 H 1.08995 * 109.47394 * 84.45419 * 1 2 3 26 26 H 1.08997 * 109.47072 * 204.45212 * 1 2 3 27 27 H 1.09004 * 109.46979 * 324.45136 * 1 2 3 28 28 H 1.07994 * 120.00215 * 172.62207 * 3 2 1 29 29 H 1.09006 * 109.58497 * 246.15444 * 7 6 4 30 30 H 1.08995 * 109.58708 * 6.58100 * 7 6 4 31 31 H 1.09000 * 109.50096 * 174.59189 * 8 7 6 32 32 H 1.09008 * 109.49451 * 294.68358 * 8 7 6 33 33 H 1.09007 * 109.45760 * 58.66012 * 9 8 7 34 34 H 1.08995 * 109.46069 * 178.61609 * 9 8 7 35 35 H 0.96992 * 120.00139 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.58720 * 353.41904 * 20 6 4 37 37 H 1.09000 * 109.58740 * 113.84137 * 20 6 4 38 38 H 1.09000 * 109.47704 * 59.99851 * 22 21 2 39 39 H 1.09002 * 109.47415 * 179.97438 * 22 21 2 40 40 H 1.09000 * 109.47476 * 299.99982 * 22 21 2 41 41 H 1.09003 * 109.47163 * 60.00517 * 23 21 2 42 42 H 1.08997 * 109.47004 * 180.02562 * 23 21 2 43 43 H 1.08998 * 109.47248 * 300.00179 * 23 21 2 44 44 H 1.09004 * 109.47381 * 60.00648 * 24 21 2 45 45 H 1.09011 * 109.46838 * 179.97438 * 24 21 2 46 46 H 1.08994 * 109.47714 * 299.99822 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4456 2.4204 -0.1637 5 8 0.2595 2.4117 -0.4319 6 7 2.0960 3.5924 -0.0219 7 6 3.5505 3.6214 0.1829 8 6 4.1785 4.5403 -0.8697 9 6 3.5074 5.9143 -0.8072 10 6 2.0162 5.7703 -1.1195 11 1 1.8926 5.3282 -2.1082 12 6 1.3628 7.1279 -1.0902 13 1 1.9518 8.0061 -0.8704 14 6 0.0129 7.2490 -1.3441 15 7 -0.7042 6.1797 -1.6123 16 14 -0.7972 8.9317 -1.3071 17 1 -0.7409 9.5381 -2.6615 18 1 -2.2144 8.7898 -0.8868 19 1 -0.0803 9.8052 -0.3436 20 6 1.3645 4.8655 -0.0753 21 6 2.2605 -1.3051 0.0006 22 6 3.7647 -1.0256 0.0011 23 6 1.8909 -2.1068 1.2503 24 6 1.8908 -2.1080 -1.2482 25 1 -0.3634 0.0993 -1.0228 26 1 -0.3633 -0.9355 0.4254 27 1 -0.3633 0.8362 0.5975 28 1 3.2453 1.1556 0.1201 29 1 3.7716 4.0030 1.1798 30 1 3.9546 2.6146 0.0769 31 1 5.2448 4.6467 -0.6702 32 1 4.0345 4.1099 -1.8608 33 1 3.6304 6.3334 0.1915 34 1 3.9692 6.5775 -1.5385 35 1 -1.6537 6.2648 -1.7912 36 1 0.3267 4.6794 -0.3517 37 1 1.4037 5.3507 0.9000 38 1 4.0278 -0.4538 0.8910 39 1 4.3098 -1.9695 0.0020 40 1 4.0284 -0.4542 -0.8889 41 1 0.8192 -2.3060 1.2503 42 1 2.4362 -3.0506 1.2510 43 1 2.1542 -1.5348 2.1400 44 1 2.1542 -1.5369 -2.1385 45 1 2.4362 -3.0518 -1.2480 46 1 0.8193 -2.3072 -1.2481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:36 Heat of formation + Delta-G solvation = -38.937972 kcal Electronic energy + Delta-G solvation = -22950.658879 eV Core-core repulsion = 19839.873676 eV Total energy + Delta-G solvation = -3110.785203 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.66746 -38.11181 -36.52888 -33.34499 -32.03597 -31.70587 -29.78560 -28.70688 -27.37500 -26.39351 -25.02182 -24.38241 -22.28200 -21.69716 -19.74052 -18.30039 -17.08642 -16.94302 -16.18346 -15.09914 -14.81601 -14.53352 -14.42499 -14.14119 -14.08691 -13.62907 -13.29262 -12.91304 -12.73949 -12.60848 -12.41663 -12.21230 -12.14798 -11.92927 -11.80663 -11.74261 -11.46826 -11.09371 -10.95578 -10.95208 -10.86083 -10.59907 -10.44958 -10.26817 -10.17632 -9.83057 -9.10188 -9.04040 -8.86928 -8.63798 -8.37631 -7.58069 -5.95477 -4.04590 1.76895 3.32747 3.40032 3.42398 3.87369 3.96463 4.45617 4.56150 4.68452 4.85592 5.12205 5.19270 5.32989 5.34218 5.47386 5.48884 5.55270 5.58051 5.63175 5.68838 5.72432 5.74875 5.79967 5.96001 5.99585 6.06523 6.08833 6.14212 6.21880 6.23538 6.35294 6.37673 6.64640 6.73401 6.79723 6.81991 6.94038 7.03326 7.25315 7.41641 7.70524 7.93876 8.06438 8.39529 8.44837 8.98135 9.06669 9.60781 11.09537 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025967 B = 0.004383 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.027568 B = 6386.634342 C = 7151.600535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.036 4.036 3 C -0.226 4.226 4 C 0.534 3.466 5 O -0.536 6.536 6 N -0.605 5.605 7 C 0.109 3.891 8 C -0.134 4.134 9 C -0.110 4.110 10 C 0.039 3.961 11 H 0.028 0.972 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.879 5.879 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.113 3.887 21 C -0.039 4.039 22 C -0.146 4.146 23 C -0.139 4.139 24 C -0.137 4.137 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.263 0.737 36 H 0.123 0.877 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.866 -15.391 4.494 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.038 4.038 3 C -0.247 4.247 4 C 0.324 3.676 5 O -0.416 6.416 6 N -0.337 5.337 7 C -0.014 4.014 8 C -0.172 4.172 9 C -0.148 4.148 10 C 0.020 3.980 11 H 0.046 0.954 12 C -0.560 4.560 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.517 5.517 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.007 4.007 21 C -0.039 4.039 22 C -0.203 4.203 23 C -0.196 4.196 24 C -0.194 4.194 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.145 0.855 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.042 -15.420 4.320 17.920 hybrid contribution -0.237 1.031 -0.002 1.058 sum 7.804 -14.389 4.319 16.929 Atomic orbital electron populations 1.21063 0.91015 1.01749 1.03561 1.22344 0.96478 0.93170 0.91826 1.22814 1.00474 0.92665 1.08744 1.18484 0.87007 0.84057 0.78047 1.90758 1.15613 1.87123 1.48096 1.48381 1.07332 1.07529 1.70447 1.21655 0.81552 0.99600 0.98631 1.21955 0.98439 0.97864 0.98992 1.21619 0.98789 0.93931 1.00450 1.18886 0.89096 0.94992 0.95007 0.95419 1.21085 0.93626 0.92416 1.48856 0.92432 1.25055 0.97537 0.96543 0.94886 1.69898 1.07310 1.27777 1.46707 0.86607 0.78720 0.84495 0.78260 1.20708 1.21200 1.19928 1.22138 1.00157 0.80030 0.98414 1.19675 0.94878 0.92884 0.96434 1.21986 0.94350 1.01664 1.02301 1.21869 1.01789 0.99325 0.96623 1.21817 1.01806 0.99190 0.96590 0.90585 0.93303 0.89309 0.85467 0.92336 0.91041 0.92343 0.92210 0.93258 0.93125 0.92710 0.85928 0.94254 0.92201 0.92419 0.92044 0.92148 0.92410 0.92443 0.92314 0.92358 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 7.80 36.01 0.28 -1.49 16 2 C -0.04 -0.51 4.90 -101.16 -0.50 -1.00 16 3 C -0.23 -3.55 8.28 -37.81 -0.31 -3.86 16 4 C 0.53 11.06 7.47 -12.66 -0.09 10.97 16 5 O -0.54 -13.05 12.74 5.27 0.07 -12.98 16 6 N -0.60 -12.57 2.98 -174.43 -0.52 -13.09 16 7 C 0.11 1.78 6.32 -3.72 -0.02 1.75 16 8 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 9 C -0.11 -2.25 5.11 -26.69 -0.14 -2.38 16 10 C 0.04 1.00 2.23 -91.88 -0.21 0.79 16 11 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 12 C -0.52 -14.38 8.57 -34.44 -0.29 -14.67 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 15 N -0.88 -26.07 11.39 55.43 0.63 -25.43 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 20 C 0.11 2.81 5.39 -3.93 -0.02 2.79 16 21 C -0.04 -0.40 0.87 -155.66 -0.14 -0.54 16 22 C -0.15 -1.35 7.14 37.15 0.27 -1.09 16 23 C -0.14 -1.26 8.30 37.16 0.31 -0.95 16 24 C -0.14 -1.32 8.32 37.15 0.31 -1.01 16 25 H 0.08 1.24 8.02 -51.93 -0.42 0.82 16 26 H 0.05 0.59 6.65 -51.93 -0.35 0.25 16 27 H 0.09 1.59 6.20 -51.93 -0.32 1.27 16 28 H 0.13 1.67 3.64 -52.49 -0.19 1.48 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.95 5.37 -51.93 -0.28 0.68 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.12 3.54 5.11 -51.93 -0.27 3.28 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.54 7.39 -51.93 -0.38 0.16 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.60 7.61 -51.93 -0.40 0.20 16 41 H 0.06 0.54 6.80 -51.93 -0.35 0.19 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.06 0.58 7.76 -51.93 -0.40 0.17 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -31.06 348.35 -8.37 -39.44 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.97 Total: 1.76 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -0.81 Total: -11.43 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.11 Total: -38.53 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.06 -8.37 -39.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.499 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds