Wall clock time and date at job start Tue Mar 31 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32991 * 120.00051 * 2 1 4 4 C 1.47105 * 119.99662 * 352.61794 * 3 2 1 5 5 O 1.21605 * 120.00357 * 352.66111 * 4 3 2 6 6 N 1.34785 * 119.99411 * 172.93566 * 4 3 2 7 7 C 1.46919 * 120.63226 * 5.21458 * 6 4 3 8 8 C 1.53191 * 108.77752 * 126.37141 * 7 6 4 9 9 C 1.53038 * 109.31438 * 54.62789 * 8 7 6 10 10 C 1.53035 * 109.54199 * 298.64149 * 9 8 7 11 11 H 1.09002 * 109.49821 * 301.41345 * 10 9 8 12 12 C 1.50699 * 109.49730 * 181.34702 * 10 9 8 13 13 H 1.08001 * 120.00091 * 359.97438 * 12 10 9 14 14 C 1.37884 * 119.99793 * 179.97438 * 12 10 9 15 15 N 1.31516 * 120.00083 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99984 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47143 * 89.99871 * 16 14 12 18 18 H 1.48500 * 109.47385 * 210.00220 * 16 14 12 19 19 H 1.48502 * 109.47238 * 330.00131 * 16 14 12 20 20 C 1.46927 * 120.62675 * 184.93393 * 6 4 3 21 21 C 1.50701 * 119.99876 * 179.97438 * 2 1 3 22 22 C 1.52992 * 109.46979 * 180.02562 * 21 2 1 23 23 C 1.53005 * 109.46822 * 299.99787 * 21 2 1 24 24 C 1.52993 * 109.47042 * 59.99676 * 21 2 1 25 25 H 1.08995 * 109.47394 * 84.45419 * 1 2 3 26 26 H 1.08997 * 109.47072 * 204.45212 * 1 2 3 27 27 H 1.09004 * 109.46979 * 324.45136 * 1 2 3 28 28 H 1.07994 * 120.00215 * 172.62207 * 3 2 1 29 29 H 1.09006 * 109.58497 * 246.15444 * 7 6 4 30 30 H 1.08995 * 109.58708 * 6.58100 * 7 6 4 31 31 H 1.09000 * 109.50096 * 174.59189 * 8 7 6 32 32 H 1.09008 * 109.49451 * 294.68358 * 8 7 6 33 33 H 1.09007 * 109.45760 * 58.66012 * 9 8 7 34 34 H 1.08995 * 109.46069 * 178.61609 * 9 8 7 35 35 H 0.96992 * 120.00139 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.58720 * 353.41904 * 20 6 4 37 37 H 1.09000 * 109.58740 * 113.84137 * 20 6 4 38 38 H 1.09000 * 109.47704 * 59.99851 * 22 21 2 39 39 H 1.09002 * 109.47415 * 179.97438 * 22 21 2 40 40 H 1.09000 * 109.47476 * 299.99982 * 22 21 2 41 41 H 1.09003 * 109.47163 * 60.00517 * 23 21 2 42 42 H 1.08997 * 109.47004 * 180.02562 * 23 21 2 43 43 H 1.08998 * 109.47248 * 300.00179 * 23 21 2 44 44 H 1.09004 * 109.47381 * 60.00648 * 24 21 2 45 45 H 1.09011 * 109.46838 * 179.97438 * 24 21 2 46 46 H 1.08994 * 109.47714 * 299.99822 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4456 2.4204 -0.1637 5 8 0.2595 2.4117 -0.4319 6 7 2.0960 3.5924 -0.0219 7 6 3.5505 3.6214 0.1829 8 6 4.1785 4.5403 -0.8697 9 6 3.5074 5.9143 -0.8072 10 6 2.0162 5.7703 -1.1195 11 1 1.8926 5.3282 -2.1082 12 6 1.3628 7.1279 -1.0902 13 1 1.9518 8.0061 -0.8704 14 6 0.0129 7.2490 -1.3441 15 7 -0.7042 6.1797 -1.6123 16 14 -0.7972 8.9317 -1.3071 17 1 -0.7409 9.5381 -2.6615 18 1 -2.2144 8.7898 -0.8868 19 1 -0.0803 9.8052 -0.3436 20 6 1.3645 4.8655 -0.0753 21 6 2.2605 -1.3051 0.0006 22 6 3.7647 -1.0256 0.0011 23 6 1.8909 -2.1068 1.2503 24 6 1.8908 -2.1080 -1.2482 25 1 -0.3634 0.0993 -1.0228 26 1 -0.3633 -0.9355 0.4254 27 1 -0.3633 0.8362 0.5975 28 1 3.2453 1.1556 0.1201 29 1 3.7716 4.0030 1.1798 30 1 3.9546 2.6146 0.0769 31 1 5.2448 4.6467 -0.6702 32 1 4.0345 4.1099 -1.8608 33 1 3.6304 6.3334 0.1915 34 1 3.9692 6.5775 -1.5385 35 1 -1.6537 6.2648 -1.7912 36 1 0.3267 4.6794 -0.3517 37 1 1.4037 5.3507 0.9000 38 1 4.0278 -0.4538 0.8910 39 1 4.3098 -1.9695 0.0020 40 1 4.0284 -0.4542 -0.8889 41 1 0.8192 -2.3060 1.2503 42 1 2.4362 -3.0506 1.2510 43 1 2.1542 -1.5348 2.1400 44 1 2.1542 -1.5369 -2.1385 45 1 2.4362 -3.0518 -1.2480 46 1 0.8193 -2.3072 -1.2481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:35 Heat of formation + Delta-G solvation = -56.464106 kcal Electronic energy + Delta-G solvation = -22951.418869 eV Core-core repulsion = 19839.873676 eV Total energy + Delta-G solvation = -3111.545193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16650 -39.28689 -38.09793 -35.30686 -33.47035 -33.17785 -31.55450 -29.79043 -28.08400 -27.59173 -26.89489 -25.86786 -23.68174 -23.21719 -21.32689 -19.78407 -18.63497 -18.26964 -18.01091 -16.68124 -16.32991 -16.12809 -15.81735 -15.23148 -15.10437 -15.02593 -14.71760 -14.55045 -14.26567 -14.12694 -13.75915 -13.54772 -13.32645 -13.01255 -12.89755 -12.88316 -12.71880 -12.53737 -12.48429 -12.28412 -12.19251 -11.94546 -11.85336 -11.74774 -11.63335 -11.41346 -11.05517 -10.92581 -10.55065 -10.29138 -10.09166 -9.26538 -8.11433 -6.29486 0.49539 1.38935 1.39944 1.50942 2.31362 2.42158 2.44609 3.16312 3.55404 3.79283 3.94588 4.09831 4.11346 4.19214 4.21691 4.35790 4.43583 4.59708 4.63709 4.76357 4.78262 4.79836 4.82118 4.84772 4.88176 4.94414 5.04658 5.07407 5.08448 5.11765 5.18624 5.25102 5.25582 5.28570 5.36158 5.37988 5.47039 5.54685 5.64322 5.66836 5.74185 5.90426 6.01321 6.33060 6.78883 6.84079 7.39970 7.45876 8.91812 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025967 B = 0.004383 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.027568 B = 6386.634342 C = 7151.600535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.018 4.018 3 C -0.239 4.239 4 C 0.520 3.480 5 O -0.589 6.589 6 N -0.612 5.612 7 C 0.104 3.896 8 C -0.127 4.127 9 C -0.105 4.105 10 C 0.038 3.962 11 H -0.018 1.018 12 C -0.538 4.538 13 H 0.062 0.938 14 C 0.009 3.991 15 N -0.916 5.916 16 Si 0.959 3.041 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.261 1.261 20 C 0.126 3.874 21 C -0.037 4.037 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.137 4.137 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.161 0.839 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.259 0.741 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.764 -16.899 5.578 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.020 4.020 3 C -0.259 4.259 4 C 0.313 3.687 5 O -0.472 6.472 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.165 4.165 9 C -0.143 4.143 10 C 0.019 3.981 11 H 0.000 1.000 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.555 5.555 16 Si 0.784 3.216 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.185 1.185 20 C 0.004 3.996 21 C -0.037 4.037 22 C -0.204 4.204 23 C -0.195 4.195 24 C -0.195 4.195 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.178 0.822 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.997 -16.926 5.414 20.899 hybrid contribution -1.187 1.438 -0.353 1.897 sum 9.811 -15.488 5.061 19.020 Atomic orbital electron populations 1.20975 0.92468 1.01882 1.01990 1.22751 0.95848 0.94812 0.88551 1.22711 1.01559 0.90240 1.11438 1.19427 0.86774 0.85593 0.76917 1.90737 1.18109 1.87954 1.50448 1.48428 1.09386 1.06095 1.70383 1.22023 0.78380 1.01925 0.99464 1.21924 1.00732 0.95141 0.98674 1.21512 0.95279 0.96778 1.00716 1.18823 0.92835 0.93780 0.92707 0.99989 1.21538 0.94094 0.93691 1.48280 0.91952 1.25929 0.98328 1.00264 0.94548 1.70110 1.07222 1.30161 1.47967 0.85538 0.77456 0.79934 0.78648 1.20033 1.21312 1.18494 1.21540 0.98449 0.82139 0.97509 1.19787 0.95480 0.90755 0.97652 1.22012 0.93085 1.02991 1.02334 1.21878 1.02047 1.00060 0.95488 1.21844 1.02032 1.00015 0.95568 0.92414 0.90210 0.92715 0.82227 0.90432 0.87308 0.87624 0.93356 0.92453 0.93026 0.93194 0.90606 0.94943 0.91686 0.90188 0.92484 0.92385 0.90060 0.92586 0.93429 0.89817 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 7.80 71.24 0.56 -3.06 16 2 C -0.02 -0.47 4.90 -17.61 -0.09 -0.56 16 3 C -0.24 -7.26 8.28 23.43 0.19 -7.07 16 4 C 0.52 22.32 7.47 86.57 0.65 22.97 16 5 O -0.59 -30.89 12.74 -4.05 -0.05 -30.94 16 6 N -0.61 -25.93 2.98 -824.03 -2.45 -28.38 16 7 C 0.10 3.12 6.32 86.36 0.55 3.66 16 8 C -0.13 -3.91 6.08 30.67 0.19 -3.72 16 9 C -0.11 -4.22 5.11 30.62 0.16 -4.06 16 10 C 0.04 1.99 2.23 -11.61 -0.03 1.96 16 11 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 12 C -0.54 -30.58 8.57 25.60 0.22 -30.36 16 13 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 14 C 0.01 0.49 5.31 84.66 0.45 0.94 16 15 N -0.92 -57.49 11.39 21.45 0.24 -57.25 16 16 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 17 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.13 6.61 5.39 86.22 0.46 7.07 16 21 C -0.04 -0.66 0.87 -52.93 -0.05 -0.70 16 22 C -0.15 -2.13 7.14 71.98 0.51 -1.61 16 23 C -0.14 -2.01 8.30 71.98 0.60 -1.41 16 24 C -0.14 -2.28 8.32 71.98 0.60 -1.68 16 25 H 0.06 1.99 8.02 -2.39 -0.02 1.97 16 26 H 0.08 1.90 6.65 -2.39 -0.02 1.88 16 27 H 0.05 2.09 6.20 -2.39 -0.01 2.08 16 28 H 0.16 3.68 3.64 -2.91 -0.01 3.67 16 29 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.11 2.47 5.37 -2.39 -0.01 2.46 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.08 4.73 5.11 -2.39 -0.01 4.72 16 37 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 0.89 7.39 -2.39 -0.02 0.87 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.89 7.61 -2.39 -0.02 0.87 16 41 H 0.06 0.87 6.80 -2.39 -0.02 0.86 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.06 0.97 7.76 -2.39 -0.02 0.95 16 Total: -1.00 -74.58 348.35 5.67 -68.91 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.94 Total: 17.95 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 4.97 Total: -17.63 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.21 Total: -85.63 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.05 Total: -30.94 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -74.58 5.67 -68.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.447 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds