Wall clock time and date at job start Tue Mar 31 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32991 * 120.00387 * 2 1 4 4 C 1.47098 * 120.00125 * 187.74178 * 3 2 1 5 5 O 1.21612 * 120.00173 * 6.64236 * 4 3 2 6 6 N 1.34775 * 119.99756 * 186.63790 * 4 3 2 7 7 C 1.46923 * 120.63347 * 354.70978 * 6 4 3 8 8 C 1.53188 * 108.89711 * 233.55681 * 7 6 4 9 9 C 1.53075 * 109.29510 * 305.58103 * 8 7 6 10 10 C 1.53037 * 109.66085 * 61.14939 * 9 8 7 11 11 H 1.09001 * 109.49896 * 58.65006 * 10 9 8 12 12 C 1.50702 * 109.49932 * 178.75213 * 10 9 8 13 13 H 1.08003 * 119.99522 * 5.33916 * 12 10 9 14 14 C 1.37871 * 120.00016 * 185.34274 * 12 10 9 15 15 N 1.31515 * 120.00318 * 5.96020 * 14 12 10 16 16 Si 1.86802 * 120.00154 * 185.95869 * 14 12 10 17 17 H 1.48503 * 109.46947 * 94.99302 * 16 14 12 18 18 H 1.48495 * 109.47500 * 214.99550 * 16 14 12 19 19 H 1.48505 * 109.47107 * 334.99592 * 16 14 12 20 20 C 1.46933 * 120.62899 * 174.73047 * 6 4 3 21 21 C 1.50703 * 119.99728 * 180.02562 * 2 1 3 22 22 C 1.52999 * 109.46964 * 229.82479 * 21 2 1 23 23 C 1.52995 * 109.47204 * 349.82697 * 21 2 1 24 24 C 1.53009 * 109.47016 * 109.82693 * 21 2 1 25 25 H 1.09003 * 109.47254 * 89.99767 * 1 2 3 26 26 H 1.08997 * 109.47102 * 209.99874 * 1 2 3 27 27 H 1.09000 * 109.46816 * 329.99791 * 1 2 3 28 28 H 1.07996 * 119.99733 * 7.74412 * 3 2 1 29 29 H 1.08998 * 109.58647 * 353.42112 * 7 6 4 30 30 H 1.09003 * 109.58702 * 113.69910 * 7 6 4 31 31 H 1.09007 * 109.49506 * 65.38433 * 8 7 6 32 32 H 1.08997 * 109.50469 * 185.48502 * 8 7 6 33 33 H 1.08996 * 109.34426 * 301.12088 * 9 8 7 34 34 H 1.08998 * 109.44099 * 181.23526 * 9 8 7 35 35 H 0.97002 * 120.00381 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.58396 * 246.15502 * 20 6 4 37 37 H 1.08991 * 109.58583 * 6.58526 * 20 6 4 38 38 H 1.08997 * 109.47175 * 95.07744 * 22 21 2 39 39 H 1.09008 * 109.47217 * 215.07513 * 22 21 2 40 40 H 1.08999 * 109.47116 * 335.07562 * 22 21 2 41 41 H 1.09001 * 109.47203 * 60.00118 * 23 21 2 42 42 H 1.09009 * 109.47270 * 180.02562 * 23 21 2 43 43 H 1.08995 * 109.47459 * 299.99751 * 23 21 2 44 44 H 1.08993 * 109.46979 * 27.91462 * 24 21 2 45 45 H 1.08997 * 109.46970 * 147.91672 * 24 21 2 46 46 H 1.09000 * 109.46660 * 267.91419 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6330 1.1574 -0.1716 5 8 4.2185 0.1243 -0.4337 6 7 4.3226 2.3077 -0.0384 7 6 3.6204 3.5825 0.1631 8 6 4.0965 4.5836 -0.8941 9 6 5.6227 4.6881 -0.8409 10 6 6.2432 3.3235 -1.1492 11 1 5.9183 2.9904 -2.1349 12 6 7.7458 3.4374 -1.1260 13 1 8.2124 4.3649 -0.8287 14 6 8.5245 2.3576 -1.4844 15 7 7.9603 1.2681 -1.9580 16 14 10.3813 2.4420 -1.2975 17 1 10.7755 1.8438 0.0033 18 1 11.0250 1.6893 -2.4039 19 1 10.8194 3.8602 -1.3431 20 6 5.7909 2.3108 -0.0925 21 6 2.2605 -1.3052 -0.0006 22 6 3.3214 -1.2820 1.1016 23 6 1.2859 -2.4568 0.2537 24 6 2.9392 -1.5016 -1.3578 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6395 2.0827 0.1260 29 1 2.5462 3.4278 0.0625 30 1 3.8423 3.9686 1.1580 31 1 3.7915 4.2411 -1.8830 32 1 3.6556 5.5604 -0.6950 33 1 5.9281 5.0093 0.1549 34 1 5.9624 5.4162 -1.5774 35 1 8.5082 0.5085 -2.2105 36 1 6.1917 2.5945 0.8806 37 1 6.1487 1.3172 -0.3619 38 1 2.9219 -1.7519 2.0003 39 1 4.2040 -1.8279 0.7679 40 1 3.5942 -0.2500 1.3218 41 1 0.5301 -2.4733 -0.5316 42 1 1.8309 -3.4008 0.2537 43 1 0.8024 -2.3169 1.2204 44 1 3.1532 -0.5292 -1.8011 45 1 3.8702 -2.0519 -1.2221 46 1 2.2776 -2.0638 -2.0168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:40 Heat of formation + Delta-G solvation = -8.021931 kcal Electronic energy + Delta-G solvation = -23543.162883 eV Core-core repulsion = 20433.718301 eV Total energy + Delta-G solvation = -3109.444583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19812 -37.90578 -35.96056 -33.43986 -32.35325 -31.51196 -29.93779 -28.60547 -26.79985 -26.29811 -25.01558 -24.27392 -22.03462 -21.56155 -19.95002 -18.51443 -17.03396 -16.77786 -16.12506 -15.35150 -14.87928 -14.51563 -14.13862 -14.05418 -13.79865 -13.62804 -13.27940 -12.95763 -12.74120 -12.62354 -12.39001 -12.28982 -12.04142 -11.85125 -11.66452 -11.45564 -10.96029 -10.88993 -10.67621 -10.49162 -10.47442 -10.43829 -10.26260 -10.21126 -10.16484 -9.77424 -9.07762 -9.02090 -8.77469 -8.56814 -8.37785 -7.53321 -5.98211 -4.04280 1.72659 3.32250 3.40061 3.42113 3.85485 3.93717 4.45746 4.75593 4.85834 5.17146 5.30037 5.33323 5.36631 5.44170 5.53575 5.57086 5.60401 5.61688 5.74090 5.85518 5.88314 6.00118 6.04880 6.11937 6.22327 6.23024 6.27820 6.35660 6.48475 6.53582 6.62982 6.68674 6.72058 6.77932 6.88338 6.92406 7.00878 7.06282 7.20516 7.37624 7.67742 7.89789 8.02040 8.35511 8.42622 8.98749 9.04685 9.60405 11.08930 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.005407 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.125372 B = 5177.597078 C = 6199.551603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.036 4.036 3 C -0.226 4.226 4 C 0.526 3.474 5 O -0.516 6.516 6 N -0.604 5.604 7 C 0.110 3.890 8 C -0.134 4.134 9 C -0.110 4.110 10 C 0.039 3.961 11 H 0.034 0.966 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.065 3.935 15 N -0.878 5.878 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.119 3.881 21 C -0.028 4.028 22 C -0.117 4.117 23 C -0.141 4.141 24 C -0.110 4.110 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.262 0.738 36 H 0.040 0.960 37 H 0.108 0.892 38 H 0.025 0.975 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.296 -1.264 4.938 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.037 4.037 3 C -0.247 4.247 4 C 0.316 3.684 5 O -0.396 6.396 6 N -0.337 5.337 7 C -0.014 4.014 8 C -0.173 4.173 9 C -0.148 4.148 10 C 0.020 3.980 11 H 0.052 0.948 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.515 5.515 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.001 4.001 21 C -0.028 4.028 22 C -0.174 4.174 23 C -0.198 4.198 24 C -0.167 4.167 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.913 -1.985 4.732 15.771 hybrid contribution 0.995 0.275 0.104 1.038 sum -13.917 -1.710 4.836 14.833 Atomic orbital electron populations 1.21045 0.91814 1.02896 1.02553 1.22530 0.95182 0.94738 0.91293 1.22609 0.94701 0.98187 1.09194 1.18322 0.87592 0.83713 0.78726 1.90916 1.71245 1.30476 1.46959 1.48376 1.08944 1.05745 1.70609 1.21645 0.96095 0.85091 0.98592 1.21961 0.98733 0.97597 0.98966 1.21626 0.92230 1.00527 1.00384 1.18961 0.94909 0.89044 0.95073 0.94785 1.21067 0.90507 0.98276 1.46205 0.92503 1.25028 0.98440 0.95714 0.94635 1.69970 1.35326 1.04486 1.41673 0.86648 0.85984 0.78025 0.77770 1.20694 1.21271 1.19917 1.22114 0.74332 1.05113 0.98565 1.19566 0.94368 0.90768 0.98057 1.22150 0.97475 1.02908 0.94857 1.22071 0.98764 0.98287 1.00719 1.21938 0.98544 1.02474 0.93741 0.90682 0.90874 0.91668 0.86012 0.90993 0.92391 0.92213 0.92360 0.93388 0.93085 0.92821 0.94154 0.87348 0.95608 0.91944 0.91713 0.92819 0.92623 0.92989 0.90794 0.92234 0.95751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.31 36.01 0.34 -0.91 16 2 C -0.04 -0.48 4.92 -101.16 -0.50 -0.98 16 3 C -0.23 -3.42 8.39 -37.81 -0.32 -3.74 16 4 C 0.53 10.20 5.66 -12.67 -0.07 10.13 16 5 O -0.52 -11.35 7.98 5.27 0.04 -11.30 16 6 N -0.60 -12.01 2.97 -174.16 -0.52 -12.52 16 7 C 0.11 1.73 6.31 -3.71 -0.02 1.70 16 8 C -0.13 -2.20 6.09 -26.60 -0.16 -2.36 16 9 C -0.11 -2.21 5.10 -26.67 -0.14 -2.35 16 10 C 0.04 0.97 2.12 -91.65 -0.19 0.78 16 11 H 0.03 0.96 8.12 -51.93 -0.42 0.54 16 12 C -0.52 -14.24 8.49 -34.44 -0.29 -14.53 16 13 H 0.06 1.53 7.76 -52.48 -0.41 1.12 16 14 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 15 N -0.88 -25.73 12.05 55.43 0.67 -25.06 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.12 2.85 5.49 -3.71 -0.02 2.83 16 21 C -0.03 -0.40 0.75 -155.66 -0.12 -0.52 16 22 C -0.12 -1.92 7.58 37.16 0.28 -1.64 16 23 C -0.14 -1.63 6.77 37.16 0.25 -1.38 16 24 C -0.11 -1.85 7.54 37.16 0.28 -1.57 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.64 5.90 -51.93 -0.31 0.33 16 27 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 28 H 0.12 1.54 5.89 -52.49 -0.31 1.23 16 29 H 0.07 0.94 5.37 -51.93 -0.28 0.66 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 3.01 5.77 -51.93 -0.30 2.71 16 38 H 0.03 0.36 7.75 -51.93 -0.40 -0.04 16 39 H 0.06 1.12 6.96 -51.92 -0.36 0.76 16 40 H 0.06 1.19 4.68 -51.93 -0.24 0.94 16 41 H 0.05 0.55 7.47 -51.93 -0.39 0.17 16 42 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.05 0.54 7.43 -51.93 -0.39 0.15 16 44 H 0.07 1.45 5.52 -51.93 -0.29 1.16 16 45 H 0.06 1.09 7.11 -51.93 -0.37 0.72 16 46 H 0.02 0.35 7.79 -51.93 -0.40 -0.05 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -29.74 338.68 -8.30 -38.04 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.80 Total: 2.18 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -0.78 Total: -12.81 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.15 Total: -37.58 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.04 Total: -11.30 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.74 -8.30 -38.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.023 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds