Wall clock time and date at job start Tue Mar 31 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32996 * 120.00131 * 2 1 4 4 C 1.47099 * 119.99994 * 7.67322 * 3 2 1 5 5 O 1.21615 * 120.00043 * 7.33513 * 4 3 2 6 6 N 1.34779 * 119.99858 * 187.33348 * 4 3 2 7 7 C 1.46918 * 120.63095 * 354.50913 * 6 4 3 8 8 C 1.53198 * 108.77609 * 233.58118 * 7 6 4 9 9 C 1.53035 * 109.31107 * 305.36934 * 8 7 6 10 10 C 1.53037 * 109.54309 * 61.36321 * 9 8 7 11 11 H 1.09000 * 109.49797 * 58.61375 * 10 9 8 12 12 C 1.50699 * 109.50227 * 178.67930 * 10 9 8 13 13 H 1.07998 * 119.99759 * 0.02562 * 12 10 9 14 14 C 1.37872 * 120.00194 * 179.97438 * 12 10 9 15 15 N 1.31521 * 120.00249 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00124 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47285 * 60.00303 * 16 14 12 18 18 H 1.48498 * 109.47099 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47044 * 299.99749 * 16 14 12 20 20 C 1.46929 * 120.62732 * 174.22585 * 6 4 3 21 21 C 1.50704 * 120.00019 * 180.28021 * 2 1 3 22 22 C 1.53003 * 109.47336 * 179.72146 * 21 2 1 23 23 C 1.53006 * 109.46721 * 299.71820 * 21 2 1 24 24 C 1.52997 * 109.47242 * 59.72026 * 21 2 1 25 25 H 1.08999 * 109.46712 * 275.25406 * 1 2 3 26 26 H 1.08999 * 109.46807 * 35.24999 * 1 2 3 27 27 H 1.08994 * 109.47283 * 155.25660 * 1 2 3 28 28 H 1.08003 * 119.99878 * 187.67826 * 3 2 1 29 29 H 1.08996 * 109.58801 * 353.37362 * 7 6 4 30 30 H 1.09003 * 109.58534 * 113.65769 * 7 6 4 31 31 H 1.08999 * 109.49063 * 65.31629 * 8 7 6 32 32 H 1.08995 * 109.49745 * 185.41507 * 8 7 6 33 33 H 1.09008 * 109.46080 * 181.38390 * 9 8 7 34 34 H 1.09002 * 109.46488 * 301.35063 * 9 8 7 35 35 H 0.96998 * 120.00199 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.58856 * 246.20346 * 20 6 4 37 37 H 1.08998 * 109.58934 * 6.63008 * 20 6 4 38 38 H 1.09004 * 109.46677 * 60.00026 * 22 21 2 39 39 H 1.08996 * 109.46871 * 179.97438 * 22 21 2 40 40 H 1.08995 * 109.46952 * 299.99832 * 22 21 2 41 41 H 1.09002 * 109.46885 * 59.99992 * 23 21 2 42 42 H 1.08995 * 109.46555 * 179.97438 * 23 21 2 43 43 H 1.08999 * 109.47165 * 300.00095 * 23 21 2 44 44 H 1.08995 * 109.47185 * 60.00082 * 24 21 2 45 45 H 1.08996 * 109.47137 * 180.02562 * 24 21 2 46 46 H 1.09002 * 109.47006 * 300.00401 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4464 2.4200 0.1701 5 8 0.2614 2.4107 0.4434 6 7 2.0949 3.5923 0.0231 7 6 3.5485 3.6224 -0.1880 8 6 4.1799 4.5451 0.8593 9 6 3.5070 5.9181 0.7956 10 6 2.0172 5.7734 1.1147 11 1 1.8983 5.3346 2.1053 12 6 1.3619 7.1300 1.0835 13 1 1.9489 8.0081 0.8581 14 6 0.0129 7.2501 1.3415 15 7 -0.7020 6.1807 1.6155 16 14 -0.7996 8.9317 1.3022 17 1 -0.6383 9.5280 -0.0483 18 1 -2.2450 8.7905 1.6120 19 1 -0.1612 9.8136 2.3122 20 6 1.3606 4.8643 0.0646 21 6 2.2605 -1.3051 -0.0064 22 6 3.7648 -1.0256 -0.0120 23 6 1.8962 -2.1104 1.2425 24 6 1.8857 -2.1044 -1.2560 25 1 -0.3633 0.0941 1.0234 26 1 -0.3633 0.8392 -0.5931 27 1 -0.3633 -0.9333 -0.4301 28 1 3.2448 1.1559 -0.1250 29 1 3.9542 2.6164 -0.0808 30 1 3.7649 3.9990 -1.1877 31 1 4.0406 4.1174 1.8521 32 1 5.2452 4.6522 0.6549 33 1 3.9711 6.5842 1.5230 34 1 3.6251 6.3344 -0.2049 35 1 -1.6510 6.2652 1.7974 36 1 1.4023 5.3424 -0.9140 37 1 0.3222 4.6780 0.3387 38 1 4.0318 -0.4562 0.8783 39 1 4.3097 -1.9695 -0.0162 40 1 4.0243 -0.4519 -0.9017 41 1 0.8245 -2.3095 1.2466 42 1 2.4408 -3.0545 1.2377 43 1 2.1632 -1.5410 2.1328 44 1 2.1452 -1.5307 -2.1456 45 1 2.4303 -3.0485 -1.2603 46 1 0.8140 -2.3035 -1.2520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:43 Heat of formation + Delta-G solvation = -38.873834 kcal Electronic energy + Delta-G solvation = -22947.619440 eV Core-core repulsion = 19836.837019 eV Total energy + Delta-G solvation = -3110.782422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.66065 -38.10212 -36.51206 -33.32791 -32.03558 -31.70532 -29.75853 -28.70599 -27.37524 -26.39417 -25.01886 -24.37432 -22.27079 -21.69986 -19.73374 -18.31126 -17.08300 -16.94114 -16.17402 -15.09959 -14.81088 -14.53203 -14.42761 -14.14023 -14.08861 -13.62678 -13.29155 -12.90327 -12.73751 -12.60441 -12.41079 -12.21170 -12.14632 -11.92732 -11.79902 -11.73658 -11.46730 -11.09409 -10.95788 -10.94030 -10.85355 -10.60491 -10.47610 -10.26711 -10.17763 -9.82512 -9.10122 -9.03864 -8.86826 -8.64038 -8.37704 -7.57458 -5.94975 -4.04114 1.76824 3.34126 3.39960 3.41297 3.88159 3.95850 4.45891 4.56161 4.68394 4.85594 5.12206 5.19293 5.33013 5.34489 5.47373 5.48858 5.55223 5.58403 5.63159 5.68784 5.72474 5.74962 5.79967 5.95988 5.99585 6.06620 6.08725 6.14180 6.21862 6.23642 6.35258 6.37672 6.64210 6.73286 6.79758 6.81993 6.93825 7.03107 7.24983 7.41375 7.70089 7.93388 8.06104 8.39687 8.44814 8.98302 9.06602 9.61123 11.10041 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.004382 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.320068 B = 6388.169010 C = 7153.580570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.036 4.036 3 C -0.226 4.226 4 C 0.534 3.466 5 O -0.536 6.536 6 N -0.605 5.605 7 C 0.110 3.890 8 C -0.134 4.134 9 C -0.110 4.110 10 C 0.041 3.959 11 H 0.028 0.972 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.879 5.879 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.113 3.887 21 C -0.039 4.039 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.139 4.139 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.128 0.872 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.263 0.737 36 H 0.039 0.961 37 H 0.122 0.878 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.849 -15.398 -4.534 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.038 4.038 3 C -0.247 4.247 4 C 0.324 3.676 5 O -0.416 6.416 6 N -0.337 5.337 7 C -0.014 4.014 8 C -0.172 4.172 9 C -0.148 4.148 10 C 0.021 3.979 11 H 0.047 0.953 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.517 5.517 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.007 4.007 21 C -0.039 4.039 22 C -0.203 4.203 23 C -0.194 4.194 24 C -0.196 4.196 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.023 -15.431 -4.347 17.927 hybrid contribution -0.234 1.037 -0.022 1.063 sum 7.789 -14.394 -4.369 16.939 Atomic orbital electron populations 1.21060 0.91018 1.01771 1.03537 1.22344 0.96473 0.93166 0.91834 1.22818 1.00494 0.92675 1.08718 1.18485 0.86980 0.84059 0.78083 1.90761 1.15675 1.87131 1.48025 1.48381 1.07372 1.07572 1.70385 1.21651 0.81565 0.99595 0.98609 1.21949 0.98408 0.97839 0.99016 1.21622 0.98797 0.93939 1.00443 1.19030 0.89018 0.94920 0.94892 0.95341 1.21055 0.93717 0.92489 1.48844 0.92505 1.25049 0.97532 0.96521 0.94876 1.69897 1.07445 1.27832 1.46502 0.86672 0.78371 0.84554 0.78477 1.20272 1.21274 1.20314 1.22313 1.00058 0.80003 0.98338 1.19679 0.94880 0.92886 0.96432 1.21987 0.94350 1.01663 1.02299 1.21818 1.01823 0.99168 0.96593 1.21868 1.01781 0.99335 0.96625 0.90589 0.89323 0.93290 0.85472 0.91063 0.92358 0.92200 0.92352 0.93129 0.93263 0.92660 0.94235 0.86006 0.92047 0.92419 0.92197 0.92186 0.92358 0.92307 0.92439 0.92409 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 7.81 36.01 0.28 -1.49 16 2 C -0.04 -0.51 4.90 -101.16 -0.50 -1.00 16 3 C -0.23 -3.55 8.28 -37.81 -0.31 -3.86 16 4 C 0.53 11.06 7.46 -12.66 -0.09 10.96 16 5 O -0.54 -13.05 12.76 5.26 0.07 -12.98 16 6 N -0.60 -12.57 2.97 -173.90 -0.52 -13.09 16 7 C 0.11 1.78 6.31 -3.71 -0.02 1.75 16 8 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 9 C -0.11 -2.25 5.10 -26.69 -0.14 -2.39 16 10 C 0.04 1.03 2.26 -91.43 -0.21 0.82 16 11 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.52 -14.41 8.56 -34.44 -0.29 -14.71 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 15 N -0.88 -26.07 11.41 55.43 0.63 -25.43 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.11 2.81 5.44 -3.48 -0.02 2.79 16 21 C -0.04 -0.40 0.87 -155.66 -0.14 -0.54 16 22 C -0.15 -1.35 7.14 37.16 0.27 -1.09 16 23 C -0.14 -1.32 8.32 37.16 0.31 -1.01 16 24 C -0.14 -1.26 8.30 37.16 0.31 -0.95 16 25 H 0.08 1.23 8.02 -51.93 -0.42 0.82 16 26 H 0.09 1.59 6.20 -51.93 -0.32 1.27 16 27 H 0.05 0.59 6.63 -51.93 -0.34 0.25 16 28 H 0.13 1.67 3.64 -52.48 -0.19 1.48 16 29 H 0.07 0.95 5.38 -51.93 -0.28 0.67 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.12 3.52 5.14 -51.93 -0.27 3.25 16 38 H 0.06 0.60 7.62 -51.93 -0.40 0.20 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.54 7.38 -51.93 -0.38 0.16 16 41 H 0.06 0.57 7.77 -51.93 -0.40 0.17 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.54 6.79 -51.93 -0.35 0.19 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -31.04 348.44 -8.37 -39.41 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.97 Total: 1.76 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.81 Total: -11.41 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.12 Total: -38.52 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.04 -8.37 -39.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.533 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds