Wall clock time and date at job start Tue Mar 31 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32996 * 120.00131 * 2 1 4 4 C 1.47099 * 119.99994 * 7.67322 * 3 2 1 5 5 O 1.21615 * 120.00043 * 7.33513 * 4 3 2 6 6 N 1.34779 * 119.99858 * 187.33348 * 4 3 2 7 7 C 1.46918 * 120.63095 * 354.50913 * 6 4 3 8 8 C 1.53198 * 108.77609 * 233.58118 * 7 6 4 9 9 C 1.53035 * 109.31107 * 305.36934 * 8 7 6 10 10 C 1.53037 * 109.54309 * 61.36321 * 9 8 7 11 11 H 1.09000 * 109.49797 * 58.61375 * 10 9 8 12 12 C 1.50699 * 109.50227 * 178.67930 * 10 9 8 13 13 H 1.07998 * 119.99759 * 0.02562 * 12 10 9 14 14 C 1.37872 * 120.00194 * 179.97438 * 12 10 9 15 15 N 1.31521 * 120.00249 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00124 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47285 * 60.00303 * 16 14 12 18 18 H 1.48498 * 109.47099 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47044 * 299.99749 * 16 14 12 20 20 C 1.46929 * 120.62732 * 174.22585 * 6 4 3 21 21 C 1.50704 * 120.00019 * 180.28021 * 2 1 3 22 22 C 1.53003 * 109.47336 * 179.72146 * 21 2 1 23 23 C 1.53006 * 109.46721 * 299.71820 * 21 2 1 24 24 C 1.52997 * 109.47242 * 59.72026 * 21 2 1 25 25 H 1.08999 * 109.46712 * 275.25406 * 1 2 3 26 26 H 1.08999 * 109.46807 * 35.24999 * 1 2 3 27 27 H 1.08994 * 109.47283 * 155.25660 * 1 2 3 28 28 H 1.08003 * 119.99878 * 187.67826 * 3 2 1 29 29 H 1.08996 * 109.58801 * 353.37362 * 7 6 4 30 30 H 1.09003 * 109.58534 * 113.65769 * 7 6 4 31 31 H 1.08999 * 109.49063 * 65.31629 * 8 7 6 32 32 H 1.08995 * 109.49745 * 185.41507 * 8 7 6 33 33 H 1.09008 * 109.46080 * 181.38390 * 9 8 7 34 34 H 1.09002 * 109.46488 * 301.35063 * 9 8 7 35 35 H 0.96998 * 120.00199 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.58856 * 246.20346 * 20 6 4 37 37 H 1.08998 * 109.58934 * 6.63008 * 20 6 4 38 38 H 1.09004 * 109.46677 * 60.00026 * 22 21 2 39 39 H 1.08996 * 109.46871 * 179.97438 * 22 21 2 40 40 H 1.08995 * 109.46952 * 299.99832 * 22 21 2 41 41 H 1.09002 * 109.46885 * 59.99992 * 23 21 2 42 42 H 1.08995 * 109.46555 * 179.97438 * 23 21 2 43 43 H 1.08999 * 109.47165 * 300.00095 * 23 21 2 44 44 H 1.08995 * 109.47185 * 60.00082 * 24 21 2 45 45 H 1.08996 * 109.47137 * 180.02562 * 24 21 2 46 46 H 1.09002 * 109.47006 * 300.00401 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4464 2.4200 0.1701 5 8 0.2614 2.4107 0.4434 6 7 2.0949 3.5923 0.0231 7 6 3.5485 3.6224 -0.1880 8 6 4.1799 4.5451 0.8593 9 6 3.5070 5.9181 0.7956 10 6 2.0172 5.7734 1.1147 11 1 1.8983 5.3346 2.1053 12 6 1.3619 7.1300 1.0835 13 1 1.9489 8.0081 0.8581 14 6 0.0129 7.2501 1.3415 15 7 -0.7020 6.1807 1.6155 16 14 -0.7996 8.9317 1.3022 17 1 -0.6383 9.5280 -0.0483 18 1 -2.2450 8.7905 1.6120 19 1 -0.1612 9.8136 2.3122 20 6 1.3606 4.8643 0.0646 21 6 2.2605 -1.3051 -0.0064 22 6 3.7648 -1.0256 -0.0120 23 6 1.8962 -2.1104 1.2425 24 6 1.8857 -2.1044 -1.2560 25 1 -0.3633 0.0941 1.0234 26 1 -0.3633 0.8392 -0.5931 27 1 -0.3633 -0.9333 -0.4301 28 1 3.2448 1.1559 -0.1250 29 1 3.9542 2.6164 -0.0808 30 1 3.7649 3.9990 -1.1877 31 1 4.0406 4.1174 1.8521 32 1 5.2452 4.6522 0.6549 33 1 3.9711 6.5842 1.5230 34 1 3.6251 6.3344 -0.2049 35 1 -1.6510 6.2652 1.7974 36 1 1.4023 5.3424 -0.9140 37 1 0.3222 4.6780 0.3387 38 1 4.0318 -0.4562 0.8783 39 1 4.3097 -1.9695 -0.0162 40 1 4.0243 -0.4519 -0.9017 41 1 0.8245 -2.3095 1.2466 42 1 2.4408 -3.0545 1.2377 43 1 2.1632 -1.5410 2.1328 44 1 2.1452 -1.5307 -2.1456 45 1 2.4303 -3.0485 -1.2603 46 1 0.8140 -2.3035 -1.2520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:43 Heat of formation + Delta-G solvation = -56.362730 kcal Electronic energy + Delta-G solvation = -22948.377816 eV Core-core repulsion = 19836.837019 eV Total energy + Delta-G solvation = -3111.540797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15670 -39.27359 -38.08284 -35.29265 -33.46777 -33.17720 -31.52586 -29.79055 -28.08433 -27.59019 -26.89121 -25.85898 -23.67395 -23.21648 -21.32444 -19.79069 -18.62591 -18.26665 -18.00554 -16.67688 -16.33208 -16.12745 -15.81298 -15.22610 -15.10285 -15.02766 -14.70974 -14.53802 -14.26035 -14.12205 -13.76330 -13.53645 -13.32546 -13.01195 -12.88366 -12.86704 -12.71986 -12.55508 -12.48586 -12.28203 -12.21687 -11.94523 -11.85364 -11.74645 -11.62745 -11.41316 -11.04810 -10.92733 -10.55177 -10.29078 -10.08915 -9.25893 -8.10972 -6.28999 0.49507 1.39247 1.41327 1.49575 2.32160 2.42530 2.44076 3.16654 3.55453 3.79314 3.94582 4.09781 4.11412 4.19586 4.21692 4.36087 4.43585 4.60144 4.63717 4.76185 4.78191 4.79678 4.81510 4.84709 4.87837 4.94414 5.04657 5.07395 5.08189 5.11794 5.18623 5.25179 5.25629 5.28599 5.36174 5.37955 5.47027 5.54728 5.64410 5.66750 5.74454 5.90492 6.00289 6.33142 6.79012 6.84122 7.40323 7.45992 8.92130 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.004382 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.320068 B = 6388.169010 C = 7153.580570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.018 4.018 3 C -0.239 4.239 4 C 0.520 3.480 5 O -0.589 6.589 6 N -0.612 5.612 7 C 0.104 3.896 8 C -0.126 4.126 9 C -0.105 4.105 10 C 0.039 3.961 11 H -0.017 1.017 12 C -0.539 4.539 13 H 0.062 0.938 14 C 0.009 3.991 15 N -0.916 5.916 16 Si 0.959 3.041 17 H -0.266 1.266 18 H -0.289 1.289 19 H -0.268 1.268 20 C 0.126 3.874 21 C -0.037 4.037 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.138 4.138 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.161 0.839 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.259 0.741 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.741 -16.899 -5.645 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.020 4.020 3 C -0.260 4.260 4 C 0.313 3.687 5 O -0.473 6.473 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.164 4.164 9 C -0.143 4.143 10 C 0.020 3.980 11 H 0.001 0.999 12 C -0.578 4.578 13 H 0.080 0.920 14 C -0.190 4.190 15 N -0.554 5.554 16 Si 0.784 3.216 17 H -0.191 1.191 18 H -0.214 1.214 19 H -0.192 1.192 20 C 0.004 3.996 21 C -0.037 4.037 22 C -0.204 4.204 23 C -0.195 4.195 24 C -0.195 4.195 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.178 0.822 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.973 -16.929 -5.468 20.902 hybrid contribution -1.180 1.442 0.338 1.894 sum 9.793 -15.487 -5.131 19.028 Atomic orbital electron populations 1.20974 0.92470 1.01885 1.01986 1.22751 0.95846 0.94808 0.88562 1.22714 1.01581 0.90255 1.11406 1.19427 0.86746 0.85595 0.76955 1.90740 1.18175 1.87961 1.50381 1.48429 1.09415 1.06148 1.70323 1.22018 0.78401 1.01908 0.99451 1.21919 1.00692 0.95127 0.98699 1.21515 0.95297 0.96774 1.00704 1.18965 0.92753 0.93718 0.92613 0.99916 1.21516 0.94194 0.93783 1.48262 0.91977 1.25923 0.98327 1.00238 0.94535 1.70113 1.07319 1.30208 1.47787 0.85602 0.77029 0.79943 0.79053 1.19102 1.21441 1.19245 1.21715 0.98341 0.82114 0.97459 1.19791 0.95483 0.90757 0.97650 1.22013 0.93085 1.02989 1.02330 1.21844 1.02045 0.99993 0.95573 1.21876 1.02035 1.00074 0.95490 0.92412 0.92732 0.90198 0.82232 0.87337 0.90442 0.93350 0.87636 0.93045 0.92447 0.93200 0.94857 0.90682 0.92486 0.90189 0.91685 0.92550 0.89817 0.93419 0.92583 0.90060 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 7.81 71.24 0.56 -3.06 16 2 C -0.02 -0.48 4.90 -17.61 -0.09 -0.56 16 3 C -0.24 -7.27 8.28 23.43 0.19 -7.07 16 4 C 0.52 22.31 7.46 86.57 0.65 22.96 16 5 O -0.59 -30.89 12.76 -4.08 -0.05 -30.94 16 6 N -0.61 -25.92 2.97 -822.34 -2.44 -28.36 16 7 C 0.10 3.12 6.31 86.37 0.55 3.67 16 8 C -0.13 -3.90 6.08 30.67 0.19 -3.71 16 9 C -0.11 -4.22 5.10 30.62 0.16 -4.06 16 10 C 0.04 2.04 2.26 -11.32 -0.03 2.01 16 11 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 12 C -0.54 -30.67 8.56 25.60 0.22 -30.45 16 13 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 14 C 0.01 0.53 5.30 84.65 0.45 0.97 16 15 N -0.92 -57.49 11.41 21.45 0.24 -57.24 16 16 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C 0.13 6.61 5.44 86.51 0.47 7.08 16 21 C -0.04 -0.66 0.87 -52.92 -0.05 -0.70 16 22 C -0.15 -2.13 7.14 71.98 0.51 -1.61 16 23 C -0.14 -2.28 8.32 71.98 0.60 -1.68 16 24 C -0.14 -2.01 8.30 71.98 0.60 -1.41 16 25 H 0.06 1.99 8.02 -2.39 -0.02 1.97 16 26 H 0.05 2.09 6.20 -2.39 -0.01 2.07 16 27 H 0.08 1.90 6.63 -2.39 -0.02 1.89 16 28 H 0.16 3.68 3.64 -2.91 -0.01 3.67 16 29 H 0.11 2.46 5.38 -2.39 -0.01 2.45 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.03 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.07 4.67 5.14 -2.39 -0.01 4.66 16 38 H 0.06 0.89 7.62 -2.39 -0.02 0.87 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.89 7.38 -2.39 -0.02 0.87 16 41 H 0.06 0.97 7.77 -2.39 -0.02 0.95 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 0.87 6.79 -2.39 -0.02 0.86 16 Total: -1.00 -74.53 348.44 5.69 -68.84 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.94 Total: 18.02 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 4.97 Total: -17.63 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.19 Total: -85.61 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.05 Total: -30.94 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -74.53 5.69 -68.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.476 kcal (2) G-P(sol) polarization free energy of solvation -74.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds