Wall clock time and date at job start Tue Mar 31 2020 01:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46497 * 109.47298 * 60.00396 * 13 2 1 15 15 C 1.34774 * 120.00283 * 180.02562 * 14 13 2 16 16 O 1.21280 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00337 * 179.97438 * 15 14 13 18 18 C 1.52304 * 115.91532 * 248.28573 * 17 15 14 19 19 C 1.52064 * 115.93220 * 179.97438 * 17 15 14 20 20 H 1.09000 * 117.25309 * 0.45769 * 19 17 15 21 21 C 1.52713 * 120.52198 * 210.73861 * 19 17 15 22 22 C 1.52878 * 110.15567 * 21.47142 * 21 19 17 23 23 C 1.53303 * 108.57539 * 305.47837 * 22 21 19 24 24 C 1.52079 * 114.63530 * 33.37456 * 17 15 14 25 25 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 26 26 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 27 27 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 30 30 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 31 31 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 33 33 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 35 35 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 36 36 H 0.96997 * 119.99674 * 359.97438 * 14 13 2 37 37 H 1.09007 * 117.53315 * 0.84820 * 18 17 15 38 38 H 1.08994 * 117.53834 * 146.09086 * 18 17 15 39 39 H 1.09008 * 109.35550 * 141.67956 * 21 19 17 40 40 H 1.08991 * 109.35694 * 261.25856 * 21 19 17 41 41 H 1.09001 * 109.61742 * 65.20049 * 22 21 19 42 42 H 1.08996 * 109.61715 * 185.56873 * 22 21 19 43 43 H 1.09001 * 109.61206 * 194.16969 * 23 22 21 44 44 H 1.08998 * 109.61947 * 314.52596 * 23 22 21 45 45 H 1.08995 * 109.26544 * 285.89449 * 24 17 15 46 46 H 1.08998 * 109.26602 * 45.36335 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 7 1.5517 -0.0306 -2.4454 15 6 1.8768 -0.4913 -3.6695 16 8 2.5740 -1.4775 -3.7808 17 6 1.3741 0.2188 -4.9000 18 6 0.3517 -0.5403 -5.7355 19 6 1.7971 -0.3794 -6.2325 20 1 2.4202 -1.2733 -6.2030 21 6 1.9894 0.5126 -7.4570 22 6 2.2280 1.9589 -7.0229 23 6 1.0742 2.3918 -6.1111 24 6 1.2396 1.7263 -4.7514 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7490 1.2492 33 1 2.8622 -1.8819 4.7337 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2492 36 1 0.9938 0.7578 -2.3564 37 1 0.0461 -1.5260 -5.3846 38 1 -0.4213 0.0418 -6.2370 39 1 2.8480 0.1607 -8.0291 40 1 1.0977 0.4654 -8.0819 41 1 3.1699 2.0269 -6.4785 42 1 2.2655 2.6031 -7.9013 43 1 1.0866 3.4755 -5.9948 44 1 0.1255 2.0817 -6.5491 45 1 0.3685 1.9507 -4.1359 46 1 2.1328 2.1211 -4.2673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868358994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:28 Heat of formation + Delta-G solvation = -51.448225 kcal Electronic energy + Delta-G solvation = -22519.262809 eV Core-core repulsion = 19407.935121 eV Total energy + Delta-G solvation = -3111.327688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73939 -38.47346 -36.92543 -33.68211 -33.24066 -32.15742 -31.00072 -27.19803 -26.52569 -26.51532 -24.91111 -23.83516 -22.49014 -21.59475 -20.39835 -18.85116 -18.05399 -17.24046 -16.32461 -15.61148 -15.23321 -14.76847 -14.51870 -14.48377 -14.19230 -13.97490 -13.65088 -13.38617 -13.14663 -12.82955 -12.56417 -12.30888 -12.16464 -12.05338 -12.00893 -11.23051 -11.15632 -11.08780 -11.00620 -10.87483 -10.73604 -10.63393 -10.40914 -10.27513 -10.11963 -9.89006 -9.87237 -9.62568 -9.13904 -8.93223 -8.69676 -8.35892 -6.00026 -4.01494 2.67061 3.31757 3.36626 3.37288 3.40322 3.68125 4.37751 4.44539 4.45002 4.56422 4.71547 4.83214 4.99718 5.04665 5.23727 5.30619 5.35294 5.39295 5.50297 5.56177 5.62044 5.62599 5.66858 5.75001 5.86054 5.88371 5.89470 5.99259 6.07136 6.16813 6.19106 6.22835 6.29711 6.39180 6.58010 6.62354 6.77990 7.05710 7.06899 7.12570 7.63601 7.76110 7.78638 7.98573 8.39813 8.47185 9.03096 9.61546 11.11432 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037454 B = 0.003374 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.396944 B = 8296.626965 C = 8617.693203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.716 5.716 15 C 0.539 3.461 16 O -0.546 6.546 17 C -0.142 4.142 18 C -0.158 4.158 19 C -0.115 4.115 20 H 0.116 0.884 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.084 4.084 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 7.740 -20.916 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.367 5.367 15 C 0.324 3.676 16 O -0.424 6.424 17 C -0.145 4.145 18 C -0.195 4.195 19 C -0.134 4.134 20 H 0.134 0.866 21 C -0.126 4.126 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.122 4.122 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.967 6.902 -20.822 22.292 hybrid contribution -0.560 0.698 1.161 1.466 sum -4.527 7.600 -19.661 21.560 Atomic orbital electron populations 1.21758 0.95284 1.01160 1.00203 1.20903 0.95467 0.95860 0.95058 1.21759 1.00550 0.95895 1.00204 1.19081 0.96339 0.95203 0.89455 1.21148 1.31246 1.12112 0.90534 0.92305 1.25016 0.95308 0.95075 0.99078 1.69957 1.36873 1.23013 1.23557 0.86706 0.79139 0.79768 0.82657 1.21392 1.20316 1.20326 1.21638 0.98899 0.96023 0.82983 1.46144 1.52946 1.31953 1.05644 1.19612 0.80011 0.84036 0.83907 1.90678 1.38296 1.26721 1.86744 1.21079 1.06410 0.95499 0.91537 1.23208 0.92632 1.01247 1.02405 1.22264 0.97787 1.01178 0.92157 0.86637 1.21079 1.01981 0.94234 0.95281 1.21576 0.98977 0.95930 0.99375 1.21473 0.98909 1.00040 0.95198 1.20735 1.02579 0.90692 0.98163 0.91420 0.95277 0.93377 0.93361 0.95276 0.91419 0.96362 0.96374 0.92972 0.91845 0.91881 0.76601 0.88476 0.87950 0.91348 0.91436 0.91524 0.91773 0.91368 0.91748 0.91081 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.23 8.05 37.15 0.30 -1.93 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 5 C -0.51 -13.61 7.65 -34.44 -0.26 -13.88 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 14 N -0.72 -10.76 4.85 -60.30 -0.29 -11.05 16 15 C 0.54 8.39 7.28 -10.99 -0.08 8.31 16 16 O -0.55 -10.65 16.07 5.56 0.09 -10.56 16 17 C -0.14 -1.64 2.49 -156.96 -0.39 -2.03 16 18 C -0.16 -1.60 9.27 -26.73 -0.25 -1.85 16 19 C -0.12 -1.24 5.66 -90.88 -0.51 -1.76 16 20 H 0.12 1.47 7.50 -51.93 -0.39 1.08 16 21 C -0.09 -0.72 5.83 -26.94 -0.16 -0.88 16 22 C -0.12 -0.93 5.93 -26.64 -0.16 -1.09 16 23 C -0.12 -0.89 5.67 -26.94 -0.15 -1.04 16 24 C -0.08 -0.78 4.68 -27.57 -0.13 -0.91 16 25 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 30 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 31 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 5.13 5.14 -40.82 -0.21 4.92 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.10 0.83 7.27 -51.93 -0.38 0.46 16 39 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.07 0.47 8.06 -51.93 -0.42 0.06 16 41 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.45 7.12 -51.93 -0.37 0.08 16 45 H 0.07 0.59 7.81 -51.93 -0.41 0.19 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -30.60 351.67 -9.07 -39.67 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.07 Total: 2.13 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.81 Total: -15.90 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.44 Total: -36.82 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.60 -9.07 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868358994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.783 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds