Wall clock time and date at job start Tue Mar 31 2020 01:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46497 * 109.47298 * 60.00396 * 13 2 1 15 15 C 1.34774 * 120.00283 * 180.02562 * 14 13 2 16 16 O 1.21280 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00337 * 179.97438 * 15 14 13 18 18 C 1.52304 * 115.91532 * 248.28573 * 17 15 14 19 19 C 1.52064 * 115.93220 * 179.97438 * 17 15 14 20 20 H 1.09000 * 117.25309 * 0.45769 * 19 17 15 21 21 C 1.52713 * 120.52198 * 210.73861 * 19 17 15 22 22 C 1.52878 * 110.15567 * 21.47142 * 21 19 17 23 23 C 1.53303 * 108.57539 * 305.47837 * 22 21 19 24 24 C 1.52079 * 114.63530 * 33.37456 * 17 15 14 25 25 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 26 26 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 27 27 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 30 30 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 31 31 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 33 33 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 35 35 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 36 36 H 0.96997 * 119.99674 * 359.97438 * 14 13 2 37 37 H 1.09007 * 117.53315 * 0.84820 * 18 17 15 38 38 H 1.08994 * 117.53834 * 146.09086 * 18 17 15 39 39 H 1.09008 * 109.35550 * 141.67956 * 21 19 17 40 40 H 1.08991 * 109.35694 * 261.25856 * 21 19 17 41 41 H 1.09001 * 109.61742 * 65.20049 * 22 21 19 42 42 H 1.08996 * 109.61715 * 185.56873 * 22 21 19 43 43 H 1.09001 * 109.61206 * 194.16969 * 23 22 21 44 44 H 1.08998 * 109.61947 * 314.52596 * 23 22 21 45 45 H 1.08995 * 109.26544 * 285.89449 * 24 17 15 46 46 H 1.08998 * 109.26602 * 45.36335 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 7 1.5517 -0.0306 -2.4454 15 6 1.8768 -0.4913 -3.6695 16 8 2.5740 -1.4775 -3.7808 17 6 1.3741 0.2188 -4.9000 18 6 0.3517 -0.5403 -5.7355 19 6 1.7971 -0.3794 -6.2325 20 1 2.4202 -1.2733 -6.2030 21 6 1.9894 0.5126 -7.4570 22 6 2.2280 1.9589 -7.0229 23 6 1.0742 2.3918 -6.1111 24 6 1.2396 1.7263 -4.7514 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7490 1.2492 33 1 2.8622 -1.8819 4.7337 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2492 36 1 0.9938 0.7578 -2.3564 37 1 0.0461 -1.5260 -5.3846 38 1 -0.4213 0.0418 -6.2370 39 1 2.8480 0.1607 -8.0291 40 1 1.0977 0.4654 -8.0819 41 1 3.1699 2.0269 -6.4785 42 1 2.2655 2.6031 -7.9013 43 1 1.0866 3.4755 -5.9948 44 1 0.1255 2.0817 -6.5491 45 1 0.3685 1.9507 -4.1359 46 1 2.1328 2.1211 -4.2673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868358994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:27 Heat of formation + Delta-G solvation = -68.605846 kcal Electronic energy + Delta-G solvation = -22520.006819 eV Core-core repulsion = 19407.935121 eV Total energy + Delta-G solvation = -3112.071698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77123 -39.68017 -38.40246 -35.31916 -34.01576 -33.95566 -31.78197 -29.15030 -27.98461 -27.92959 -25.78174 -25.19846 -23.95775 -22.37672 -21.49057 -20.13420 -19.15353 -18.43463 -18.30995 -17.00989 -16.46902 -16.43414 -15.85983 -15.39261 -15.17849 -14.86902 -14.79215 -14.72731 -14.38944 -14.21217 -13.95178 -13.79721 -13.53851 -12.93596 -12.89234 -12.82843 -12.74556 -12.60062 -12.34622 -12.23934 -12.02465 -11.89481 -11.71563 -11.55910 -11.45947 -11.13997 -10.92859 -10.89460 -10.66175 -10.57596 -10.51479 -10.10258 -8.14552 -6.22890 1.42450 1.44778 1.48036 1.51984 2.15453 2.44695 2.77775 3.19771 3.54163 3.68652 3.75769 3.87457 3.95299 4.04947 4.13920 4.19966 4.29947 4.38333 4.54980 4.62116 4.66820 4.68555 4.72707 4.77383 4.80944 4.93746 5.00703 5.02905 5.08016 5.10291 5.14729 5.26370 5.30062 5.33912 5.38208 5.41463 5.45322 5.48031 5.51162 5.54396 5.55645 5.77982 5.88502 6.28873 6.55509 6.92093 7.22547 7.45058 8.97946 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037454 B = 0.003374 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.396944 B = 8296.626965 C = 8617.693203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.292 1.292 11 H -0.265 1.265 12 H -0.266 1.266 13 C 0.140 3.860 14 N -0.703 5.703 15 C 0.533 3.467 16 O -0.594 6.594 17 C -0.146 4.146 18 C -0.143 4.143 19 C -0.122 4.122 20 H 0.086 0.914 21 C -0.084 4.084 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.084 4.084 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.058 0.942 31 H -0.016 1.016 32 H -0.016 1.016 33 H 0.260 0.740 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.413 0.587 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 10.834 -22.538 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.218 1.218 11 H -0.190 1.190 12 H -0.190 1.190 13 C 0.016 3.984 14 N -0.354 5.354 15 C 0.321 3.679 16 O -0.475 6.475 17 C -0.149 4.149 18 C -0.180 4.180 19 C -0.141 4.141 20 H 0.104 0.896 21 C -0.121 4.121 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.121 4.121 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.251 0.749 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.294 10.039 -22.460 25.394 hybrid contribution 0.211 -0.354 1.623 1.674 sum -6.083 9.685 -20.837 23.770 Atomic orbital electron populations 1.21690 0.93462 1.00955 1.01722 1.20708 0.96799 0.96355 0.92600 1.21693 0.99878 0.94535 1.01744 1.18961 0.94188 0.94147 0.92391 1.21566 1.30544 1.12192 0.91007 0.90771 1.25976 0.95617 0.95845 1.02805 1.70124 1.38748 1.25024 1.24188 0.85574 0.78994 0.78763 0.78168 1.21751 1.19031 1.19050 1.21230 0.97646 0.95367 0.84166 1.45924 1.52859 1.32060 1.04595 1.20434 0.79007 0.83485 0.84996 1.90658 1.40399 1.28992 1.87446 1.21087 1.07491 0.96827 0.89478 1.23310 0.92838 1.00694 1.01181 1.22306 0.97993 1.00805 0.92962 0.89610 1.21103 1.02986 0.94031 0.93999 1.21594 0.98485 0.95730 1.00092 1.21483 0.99230 1.00710 0.93747 1.20807 1.02909 0.88539 0.99862 0.92311 0.91211 0.94527 0.94521 0.91170 0.92312 0.99734 0.99739 0.93158 0.93853 0.93841 0.74860 0.89919 0.84796 0.91300 0.89495 0.93095 0.89895 0.89883 0.90399 0.89475 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 2 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 3 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.52 -27.71 7.65 25.60 0.20 -27.51 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 8 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 9 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.14 5.23 4.56 86.38 0.39 5.62 16 14 N -0.70 -20.49 4.85 -463.08 -2.25 -22.74 16 15 C 0.53 16.56 7.28 87.66 0.64 17.20 16 16 O -0.59 -24.15 16.07 -3.03 -0.05 -24.20 16 17 C -0.15 -3.13 2.49 -53.77 -0.13 -3.26 16 18 C -0.14 -2.58 9.27 30.60 0.28 -2.30 16 19 C -0.12 -2.50 5.66 -10.97 -0.06 -2.56 16 20 H 0.09 2.28 7.50 -2.39 -0.02 2.26 16 21 C -0.08 -1.16 5.83 30.46 0.18 -0.98 16 22 C -0.12 -1.49 5.93 30.66 0.18 -1.31 16 23 C -0.11 -1.24 5.67 30.46 0.17 -1.07 16 24 C -0.08 -1.28 4.68 30.05 0.14 -1.14 16 25 H 0.06 2.10 6.62 -2.39 -0.02 2.09 16 26 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 30 H 0.06 2.10 6.62 -2.38 -0.02 2.08 16 31 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.41 9.44 5.14 -92.71 -0.48 8.96 16 37 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.13 1.59 7.27 -2.39 -0.02 1.57 16 39 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.09 0.89 8.06 -2.39 -0.02 0.87 16 41 H 0.05 0.79 8.06 -2.39 -0.02 0.77 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 0.67 7.12 -2.39 -0.02 0.66 16 45 H 0.09 1.06 7.81 -2.39 -0.02 1.04 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.20 351.67 4.19 -66.01 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.47 Total: 17.13 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 3.70 Total: -24.46 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -1.96 Total: -80.08 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.20 4.19 -66.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868358994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.591 kcal (2) G-P(sol) polarization free energy of solvation -70.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds