Wall clock time and date at job start Tue Mar 31 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46684 * 2 1 4 4 C 1.53001 * 109.46991 * 240.00289 * 2 1 3 5 5 C 1.50693 * 109.47363 * 59.99594 * 4 2 1 6 6 H 1.08002 * 120.00236 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00001 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00158 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99788 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47106 * 90.00368 * 9 7 5 11 11 H 1.48507 * 109.46738 * 209.99937 * 9 7 5 12 12 H 1.48499 * 109.47214 * 330.00080 * 9 7 5 13 13 C 1.52998 * 109.47187 * 120.00158 * 2 1 3 14 14 N 1.46503 * 109.46826 * 299.99652 * 13 2 1 15 15 C 1.34777 * 119.99726 * 179.97438 * 14 13 2 16 16 O 1.21285 * 120.00189 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00211 * 180.02562 * 15 14 13 18 18 C 1.52301 * 115.91418 * 111.83145 * 17 15 14 19 19 C 1.51880 * 115.30014 * 180.02562 * 17 15 14 20 20 H 1.09007 * 117.20449 * 359.24258 * 19 17 15 21 21 C 1.52709 * 120.64634 * 149.11371 * 19 17 15 22 22 C 1.52880 * 110.04095 * 338.33040 * 21 19 17 23 23 C 1.53300 * 108.57964 * 54.58743 * 22 21 19 24 24 C 1.52070 * 114.63476 * 325.58979 * 17 15 14 25 25 H 1.09000 * 109.47041 * 299.99388 * 1 2 3 26 26 H 1.08997 * 109.47312 * 60.00208 * 1 2 3 27 27 H 1.09002 * 109.46818 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46995 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47175 * 299.99479 * 3 2 1 30 30 H 1.08993 * 109.47223 * 60.00528 * 3 2 1 31 31 H 1.08997 * 109.46977 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.46926 * 299.99428 * 4 2 1 33 33 H 0.97000 * 120.00110 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46982 * 180.02562 * 13 2 1 35 35 H 1.08993 * 109.47662 * 59.99911 * 13 2 1 36 36 H 0.96993 * 120.00149 * 0.02562 * 14 13 2 37 37 H 1.08997 * 117.53694 * 213.16826 * 18 17 15 38 38 H 1.09000 * 117.53558 * 358.33897 * 18 17 15 39 39 H 1.09002 * 109.35928 * 218.18737 * 21 19 17 40 40 H 1.08994 * 109.35374 * 98.46953 * 21 19 17 41 41 H 1.08991 * 109.61947 * 174.31808 * 22 21 19 42 42 H 1.09007 * 109.61510 * 294.85916 * 22 21 19 43 43 H 1.08993 * 109.61844 * 45.29131 * 23 22 21 44 44 H 1.09004 * 109.61052 * 165.83093 * 23 22 21 45 45 H 1.09008 * 109.27075 * 74.10113 * 24 17 15 46 46 H 1.09000 * 109.24221 * 314.61746 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6273 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 2.2272 1.4412 -5.6608 11 1 1.0843 -0.5795 -6.3617 12 1 -0.0593 1.0369 -4.9616 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5742 -1.4775 3.7808 17 6 1.3742 0.2187 4.9000 18 6 0.3540 -0.5416 5.7370 19 6 1.8052 -0.3908 6.2227 20 1 2.4239 -1.2873 6.1802 21 6 2.0094 0.4879 7.4549 22 6 2.2534 1.9363 7.0308 23 6 1.0957 2.3834 6.1309 24 6 1.2632 1.7288 4.7595 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6767 -1.7489 -1.2493 33 1 2.8622 -1.8818 -4.7337 34 1 3.1300 -0.7209 1.2494 35 1 1.6768 -1.7489 1.2493 36 1 0.9938 0.7578 2.3564 37 1 -0.4122 0.0407 6.2489 38 1 0.0395 -1.5222 5.3799 39 1 2.8699 0.1264 8.0179 40 1 1.1204 0.4404 8.0837 41 1 2.2977 2.5736 7.9139 42 1 3.1919 2.0033 6.4804 43 1 0.1485 2.0724 6.5715 44 1 1.1137 3.4680 6.0234 45 1 0.4007 1.9699 4.1380 46 1 2.1665 2.1129 4.2857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868358996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:32 Heat of formation + Delta-G solvation = -51.346029 kcal Electronic energy + Delta-G solvation = -22519.398011 eV Core-core repulsion = 19408.074755 eV Total energy + Delta-G solvation = -3111.323256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74417 -38.46555 -36.92258 -33.68028 -33.23100 -32.15557 -30.97310 -27.19832 -26.52433 -26.51390 -24.92745 -23.81914 -22.48729 -21.59675 -20.39515 -18.85504 -18.05615 -17.23777 -16.32629 -15.61247 -15.23012 -14.76624 -14.51450 -14.48132 -14.17799 -13.97844 -13.64665 -13.37655 -13.14328 -12.82914 -12.55911 -12.31253 -12.15621 -12.05963 -12.01188 -11.23631 -11.16286 -11.09458 -11.01908 -10.85744 -10.72635 -10.64254 -10.41056 -10.26310 -10.11590 -9.88884 -9.87485 -9.62642 -9.14037 -8.92347 -8.69713 -8.36296 -6.00229 -4.01619 2.67398 3.30540 3.36959 3.38193 3.40972 3.67575 4.37420 4.44669 4.44940 4.56934 4.72060 4.83419 4.99522 5.04693 5.24049 5.30079 5.35245 5.39589 5.50196 5.56496 5.62123 5.62563 5.66954 5.74969 5.85652 5.88461 5.89380 5.99404 6.07203 6.16803 6.19576 6.22854 6.29686 6.39175 6.57959 6.62404 6.77964 7.05712 7.06849 7.12550 7.63683 7.76098 7.78585 7.98461 8.39746 8.47094 9.03194 9.61525 11.11256 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037526 B = 0.003372 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.979591 B = 8301.637684 C = 8619.290769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.127 3.873 14 N -0.716 5.716 15 C 0.538 3.462 16 O -0.546 6.546 17 C -0.142 4.142 18 C -0.157 4.157 19 C -0.117 4.117 20 H 0.116 0.884 21 C -0.088 4.088 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.084 4.084 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 7.729 20.938 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.367 5.367 15 C 0.324 3.676 16 O -0.424 6.424 17 C -0.145 4.145 18 C -0.194 4.194 19 C -0.136 4.136 20 H 0.134 0.866 21 C -0.126 4.126 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.121 4.121 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.234 0.766 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.950 6.891 20.847 22.309 hybrid contribution -0.540 0.693 -1.169 1.462 sum -4.490 7.583 19.679 21.562 Atomic orbital electron populations 1.21759 0.95281 1.01154 1.00208 1.20904 0.95470 0.95857 0.95057 1.21759 1.00545 0.95899 1.00207 1.19086 0.96346 0.95217 0.89474 1.21183 1.31174 1.12077 0.90521 0.92253 1.25016 0.95333 0.95062 0.99088 1.69964 1.36972 1.23013 1.23442 0.86649 0.79183 0.79417 0.83063 1.20768 1.21335 1.19938 1.21638 0.98896 0.96022 0.82992 1.46149 1.52926 1.31952 1.05656 1.19641 0.80021 0.84040 0.83929 1.90678 1.38313 1.26708 1.86731 1.21066 1.06415 0.95506 0.91530 1.23212 0.92635 1.01223 1.02337 1.22268 0.97655 1.01258 0.92379 0.86613 1.21082 1.01937 0.94297 0.95242 1.21591 0.98954 0.95912 0.99451 1.21589 0.98888 1.00035 0.95121 1.20844 1.02602 0.90605 0.98072 0.95284 0.91407 0.93384 0.93364 0.91417 0.95271 0.96358 0.96357 0.93033 0.91849 0.91883 0.76601 0.87946 0.88470 0.91343 0.91434 0.91801 0.91507 0.91656 0.91385 0.91082 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 14 N -0.72 -10.75 4.85 -60.30 -0.29 -11.04 16 15 C 0.54 8.37 7.26 -10.98 -0.08 8.29 16 16 O -0.55 -10.63 15.99 5.55 0.09 -10.55 16 17 C -0.14 -1.64 2.48 -157.06 -0.39 -2.03 16 18 C -0.16 -1.59 9.29 -26.68 -0.25 -1.84 16 19 C -0.12 -1.26 5.63 -90.93 -0.51 -1.78 16 20 H 0.12 1.48 7.43 -51.92 -0.39 1.10 16 21 C -0.09 -0.72 5.84 -26.94 -0.16 -0.88 16 22 C -0.12 -0.93 5.92 -26.64 -0.16 -1.09 16 23 C -0.12 -0.89 5.70 -26.64 -0.15 -1.04 16 24 C -0.08 -0.78 4.75 -27.27 -0.13 -0.91 16 25 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 26 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 5.13 5.17 -40.82 -0.21 4.92 16 37 H 0.10 0.83 7.26 -51.93 -0.38 0.45 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 43 H 0.06 0.45 7.11 -51.93 -0.37 0.08 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.59 7.81 -51.92 -0.41 0.19 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -30.60 351.60 -9.06 -39.66 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.07 Total: 2.13 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.80 Total: -15.91 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.44 Total: -36.79 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.60 -9.06 -39.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868358996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.685 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds