Wall clock time and date at job start Tue Mar 31 2020 01:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47271 * 2 1 4 4 C 1.52996 * 109.47071 * 239.99310 * 2 1 3 5 5 C 1.53007 * 109.46588 * 119.99802 * 2 1 3 6 6 H 1.09002 * 115.55956 * 274.30535 * 5 2 1 7 7 C 1.53077 * 117.49064 * 128.60321 * 5 2 1 8 8 C 1.52994 * 117.49850 * 60.00171 * 5 2 1 9 9 H 1.08996 * 117.50291 * 359.96970 * 8 5 2 10 10 C 1.50705 * 117.49566 * 214.97533 * 8 5 2 11 11 O 1.21281 * 119.99892 * 0.08314 * 10 8 5 12 12 N 1.34776 * 120.00046 * 180.08504 * 10 8 5 13 13 C 1.46494 * 120.00039 * 179.97438 * 12 10 8 14 14 H 1.09003 * 110.67701 * 328.23393 * 13 12 10 15 15 C 1.54961 * 110.76455 * 91.63448 * 13 12 10 16 16 C 1.54270 * 104.16191 * 156.22179 * 15 13 12 17 17 C 1.53869 * 106.63967 * 336.44607 * 16 15 13 18 18 H 1.08999 * 110.03405 * 119.26051 * 17 16 15 19 19 C 1.50698 * 110.03390 * 240.69268 * 17 16 15 20 20 H 1.07996 * 120.00623 * 118.54486 * 19 17 16 21 21 C 1.37884 * 119.99638 * 298.54572 * 19 17 16 22 22 N 1.31506 * 119.99893 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99881 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47378 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47475 * 119.99780 * 23 21 19 26 26 H 1.48504 * 109.46774 * 240.00218 * 23 21 19 27 27 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 28 28 H 1.09000 * 109.46540 * 300.00384 * 1 2 3 29 29 H 1.08997 * 109.46850 * 59.99903 * 1 2 3 30 30 H 1.08994 * 109.47225 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47076 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47046 * 299.99425 * 3 2 1 33 33 H 1.09000 * 109.47262 * 59.99924 * 3 2 1 34 34 H 1.09003 * 109.47519 * 300.00577 * 4 2 1 35 35 H 1.09002 * 109.47092 * 60.00670 * 4 2 1 36 36 H 1.08999 * 109.47225 * 180.02562 * 4 2 1 37 37 H 1.08992 * 117.51203 * 145.03357 * 7 5 2 38 38 H 1.09000 * 117.49430 * 359.97438 * 7 5 2 39 39 H 0.97000 * 119.99722 * 0.02562 * 12 10 8 40 40 H 1.08997 * 110.47708 * 37.56776 * 15 13 12 41 41 H 1.09002 * 110.53308 * 274.90168 * 15 13 12 42 42 H 1.09002 * 110.03399 * 217.13605 * 16 15 13 43 43 H 1.08995 * 110.02943 * 95.75505 * 16 15 13 44 44 H 0.97005 * 119.99751 * 180.02562 * 22 21 19 45 45 H 1.08997 * 110.48788 * 142.28685 * 27 17 16 46 46 H 1.09001 * 110.48482 * 264.93365 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7213 1.2494 6 1 2.1271 -0.1060 2.1449 7 6 3.0742 -1.8322 1.0513 8 6 1.6356 -2.1852 1.4344 9 1 1.0060 -2.6344 0.6664 10 6 1.3883 -2.6662 2.8410 11 8 1.5104 -1.9009 3.7739 12 7 1.0313 -3.9469 3.0623 13 6 0.7914 -4.4146 4.4296 14 1 1.4289 -3.8826 5.1358 15 6 -0.7030 -4.2593 4.8092 16 6 -0.9170 -5.2956 5.9317 17 6 0.1743 -6.3661 5.7570 18 1 0.8038 -6.4062 6.6460 19 6 -0.4573 -7.7118 5.5099 20 1 -0.2669 -8.2362 4.5852 21 6 -1.2785 -8.2736 6.4645 22 7 -1.5100 -7.6353 7.5907 23 14 -2.0609 -9.9420 6.1586 24 1 -1.6446 -10.4472 4.8256 25 1 -1.6212 -10.8952 7.2090 26 1 -3.5396 -9.8099 6.1976 27 6 1.0140 -5.9440 4.5337 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7491 -1.2491 35 1 1.6768 -0.2076 -2.1392 36 1 3.1300 -0.7218 -1.2489 37 1 3.8417 -1.9479 1.8165 38 1 3.3906 -2.0491 0.0310 39 1 0.9340 -4.5590 2.3161 40 1 -1.3392 -4.4865 3.9538 41 1 -0.9015 -3.2525 5.1766 42 1 -1.9036 -5.7495 5.8378 43 1 -0.8178 -4.8167 6.9058 44 1 -2.0874 -8.0308 8.2625 45 1 2.0682 -6.1656 4.6997 46 1 0.6552 -6.4438 3.6339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868657109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:12 Heat of formation + Delta-G solvation = -64.280837 kcal Electronic energy + Delta-G solvation = -22038.959305 eV Core-core repulsion = 18927.075153 eV Total energy + Delta-G solvation = -3111.884152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31117 -39.64813 -38.43856 -35.33909 -34.74662 -33.75531 -29.98522 -28.98380 -28.19173 -28.09253 -26.14167 -24.76216 -23.76622 -21.52695 -21.36905 -20.70580 -19.27872 -18.34687 -18.30353 -17.07354 -16.65313 -16.48380 -16.06577 -15.65178 -15.49266 -14.93338 -14.61725 -14.38164 -14.16279 -13.77759 -13.65055 -13.44801 -13.14934 -13.02930 -12.77338 -12.56232 -12.49282 -12.44851 -12.33482 -12.21435 -12.04403 -11.92292 -11.72069 -11.56844 -11.45944 -11.21176 -11.12128 -10.89548 -10.73698 -10.72251 -10.47683 -9.95770 -8.10877 -6.21373 1.41645 1.43600 1.53218 1.54626 2.19697 2.44919 2.88713 3.20233 3.60734 3.77670 3.85110 3.90082 4.00040 4.05231 4.18126 4.21869 4.29227 4.34666 4.63189 4.66987 4.76966 4.81410 4.82248 4.84987 4.85484 4.96969 4.97409 5.01295 5.03288 5.11327 5.12851 5.14924 5.22581 5.25694 5.35506 5.41744 5.42112 5.52193 5.57951 5.63061 5.67467 5.91220 5.93724 6.38262 6.64600 6.91277 7.31536 7.46456 8.98352 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037183 B = 0.003020 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.861080 B = 9270.526754 C = 9381.465600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.111 4.111 6 H 0.088 0.912 7 C -0.137 4.137 8 C -0.188 4.188 9 H 0.146 0.854 10 C 0.534 3.466 11 O -0.592 6.592 12 N -0.704 5.704 13 C 0.148 3.852 14 H 0.069 0.931 15 C -0.120 4.120 16 C -0.081 4.081 17 C 0.037 3.963 18 H -0.006 1.006 19 C -0.525 4.525 20 H 0.062 0.938 21 C 0.007 3.993 22 N -0.922 5.922 23 Si 0.955 3.045 24 H -0.261 1.261 25 H -0.284 1.284 26 H -0.283 1.283 27 C -0.103 4.103 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.414 0.586 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.019 0.981 44 H 0.259 0.741 45 H 0.060 0.940 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.911 13.224 -20.343 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.037 4.037 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.130 4.130 6 H 0.106 0.894 7 C -0.174 4.174 8 C -0.209 4.209 9 H 0.164 0.836 10 C 0.323 3.677 11 O -0.473 6.473 12 N -0.353 5.353 13 C 0.043 3.957 14 H 0.087 0.913 15 C -0.159 4.159 16 C -0.120 4.120 17 C 0.018 3.982 18 H 0.012 0.988 19 C -0.563 4.563 20 H 0.080 0.920 21 C -0.192 4.192 22 N -0.562 5.562 23 Si 0.781 3.219 24 H -0.185 1.185 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.141 4.141 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.156 0.844 39 H 0.251 0.749 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.904 13.724 -19.524 24.843 hybrid contribution -0.810 -1.202 0.747 1.631 sum 6.094 12.522 -18.777 23.377 Atomic orbital electron populations 1.21874 0.94485 1.01931 1.01617 1.20108 0.95324 0.95510 0.92714 1.21833 1.01344 0.94485 1.01875 1.22024 1.01657 1.00450 0.96060 1.22444 1.01896 0.88914 0.99719 0.89380 1.23313 0.89372 1.00531 1.04210 1.22275 1.02986 1.01779 0.93836 0.83605 1.20388 0.74953 0.81544 0.90838 1.90660 1.54132 1.55898 1.46635 1.45896 1.69027 1.11285 1.09139 1.21798 0.95610 0.95098 0.83226 0.91310 1.22649 0.96334 0.97908 0.98976 1.21810 1.00185 0.95088 0.94953 1.19205 0.92528 0.93821 0.92606 0.98819 1.21634 1.28148 1.03708 1.02776 0.92030 1.25820 0.97337 1.01041 0.94980 1.70135 1.38302 1.39709 1.08052 0.85546 0.77971 0.79941 0.78445 1.18505 1.21030 1.20948 1.22544 0.99465 0.92252 0.99841 0.94041 0.91298 0.92656 0.92114 0.91328 0.93591 0.91975 0.91619 0.91375 0.89617 0.84432 0.74873 0.91183 0.93386 0.94265 0.96256 0.93224 0.92172 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.31 71.98 0.60 -1.57 16 2 C -0.04 -0.52 0.88 -52.18 -0.05 -0.57 16 3 C -0.14 -1.83 8.46 71.98 0.61 -1.23 16 4 C -0.14 -1.46 7.07 71.98 0.51 -0.95 16 5 C -0.11 -2.15 4.66 -10.77 -0.05 -2.20 16 6 H 0.09 2.24 7.64 -2.39 -0.02 2.22 16 7 C -0.14 -2.27 9.27 30.62 0.28 -1.99 16 8 C -0.19 -3.79 5.04 -11.54 -0.06 -3.85 16 9 H 0.15 2.20 7.07 -2.39 -0.02 2.18 16 10 C 0.53 15.96 7.61 87.66 0.67 16.63 16 11 O -0.59 -23.21 15.90 -3.03 -0.05 -23.26 16 12 N -0.70 -20.19 5.18 -436.31 -2.26 -22.45 16 13 C 0.15 5.41 3.27 46.31 0.15 5.56 16 14 H 0.07 2.81 7.55 -2.39 -0.02 2.79 16 15 C -0.12 -4.78 6.52 31.70 0.21 -4.57 16 16 C -0.08 -3.98 5.55 31.32 0.17 -3.81 16 17 C 0.04 1.87 2.84 -10.82 -0.03 1.84 16 18 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 19 C -0.52 -28.28 8.34 25.60 0.21 -28.07 16 20 H 0.06 3.18 7.55 -2.91 -0.02 3.15 16 21 C 0.01 0.36 5.07 84.66 0.43 0.79 16 22 N -0.92 -54.35 12.33 21.45 0.26 -54.09 16 23 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 C -0.10 -4.01 5.97 31.67 0.19 -3.82 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.85 7.29 -2.39 -0.02 0.83 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.58 7.07 -2.39 -0.02 0.57 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.60 6.98 -2.39 -0.02 0.58 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.14 1.49 5.85 -2.39 -0.01 1.47 16 39 H 0.41 9.19 8.57 -92.71 -0.79 8.40 16 40 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.04 2.09 7.17 -2.39 -0.02 2.07 16 43 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.08 2.75 7.56 -2.39 -0.02 2.73 16 Total: -1.00 -66.95 359.44 3.98 -62.97 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.15 Total: 19.34 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 3.85 Total: -27.79 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -2.00 Total: -76.54 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -66.95 3.98 -62.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868657109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.309 kcal (2) G-P(sol) polarization free energy of solvation -66.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds