Wall clock time and date at job start Tue Mar 31 2020 02:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46508 * 2 1 4 4 H 1.09001 * 110.02050 * 306.32727 * 3 2 1 5 5 C 1.54266 * 110.03390 * 67.77353 * 3 2 1 6 6 C 1.54893 * 104.19540 * 142.89017 * 5 3 2 7 7 C 1.54886 * 102.74967 * 322.05354 * 6 5 3 8 8 C 1.53882 * 110.02840 * 184.93511 * 3 2 1 9 9 C 1.52997 * 110.02956 * 121.38289 * 8 3 2 10 10 C 1.50701 * 110.03097 * 0.02562 * 8 3 2 11 11 O 1.21275 * 120.00024 * 109.97311 * 10 8 3 12 12 N 1.34778 * 119.99930 * 289.96917 * 10 8 3 13 13 C 1.46496 * 120.00360 * 185.58960 * 12 10 8 14 14 C 1.52997 * 109.47435 * 175.82238 * 13 12 10 15 15 C 1.50701 * 115.54811 * 305.12416 * 14 13 12 16 16 H 1.08001 * 120.00111 * 145.52038 * 15 14 13 17 17 C 1.37876 * 120.00139 * 325.52292 * 15 14 13 18 18 N 1.31510 * 120.00423 * 166.71385 * 17 15 14 19 19 Si 1.86805 * 119.99925 * 346.71341 * 17 15 14 20 20 H 1.48504 * 109.47152 * 95.70001 * 19 17 15 21 21 H 1.48500 * 109.47258 * 215.70137 * 19 17 15 22 22 H 1.48499 * 109.47135 * 335.70022 * 19 17 15 23 23 C 1.53003 * 117.50061 * 159.45883 * 14 13 12 24 24 C 1.53001 * 117.49937 * 90.79576 * 14 13 12 25 25 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46772 * 299.99501 * 1 2 3 27 27 H 1.08995 * 109.47436 * 59.99986 * 1 2 3 28 28 H 1.08999 * 109.46772 * 240.00499 * 2 1 3 29 29 H 1.08997 * 109.46700 * 119.99983 * 2 1 3 30 30 H 1.09003 * 110.48291 * 261.56605 * 5 3 2 31 31 H 1.08994 * 110.48691 * 24.21032 * 5 3 2 32 32 H 1.09001 * 110.75539 * 80.37488 * 6 5 3 33 33 H 1.09001 * 110.75044 * 203.73995 * 6 5 3 34 34 H 1.09002 * 110.48944 * 279.26517 * 7 6 5 35 35 H 1.08996 * 110.48334 * 156.61896 * 7 6 5 36 36 H 1.09000 * 109.47401 * 303.72160 * 9 8 3 37 37 H 1.08995 * 109.47111 * 63.72462 * 9 8 3 38 38 H 1.08998 * 109.47181 * 183.72425 * 9 8 3 39 39 H 0.97007 * 119.99586 * 5.58885 * 12 10 8 40 40 H 1.09005 * 109.46864 * 295.81819 * 13 12 10 41 41 H 1.09001 * 109.47115 * 55.81495 * 13 12 10 42 42 H 0.96996 * 120.00707 * 180.02562 * 18 17 15 43 43 H 1.08998 * 117.49492 * 359.97438 * 23 14 13 44 44 H 1.08992 * 117.50162 * 145.01757 * 23 14 13 45 45 H 1.09002 * 117.49734 * 214.97673 * 24 14 13 46 46 H 1.08993 * 117.49914 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5923 1.9965 -0.8251 5 6 1.6991 2.1235 1.3416 6 6 2.9272 3.0207 1.6349 7 6 4.1112 2.1501 1.1460 8 6 3.5736 1.4594 -0.1244 9 6 3.9899 2.2486 -1.3673 10 6 4.1003 0.0500 -0.2084 11 8 4.5670 -0.3619 -1.2493 12 7 4.0527 -0.7528 0.8731 13 6 4.6739 -2.0788 0.8291 14 6 4.5695 -2.7370 2.2063 15 6 5.1308 -1.9366 3.3533 16 1 4.6638 -1.9859 4.3258 17 6 6.2407 -1.1414 3.1611 18 7 6.5766 -0.2507 4.0685 19 14 7.2673 -1.3293 1.6118 20 1 6.8324 -0.3276 0.6053 21 1 8.6998 -1.1134 1.9380 22 1 7.0857 -2.6961 1.0604 23 6 4.7055 -4.2594 2.2740 24 6 3.3389 -3.6025 2.4843 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.7985 2.7296 1.2438 31 1 1.5750 1.3781 2.1271 32 1 2.8709 3.9500 1.0679 33 1 3.0115 3.2230 2.7027 34 1 4.3766 1.4089 1.8999 35 1 4.9708 2.7756 0.9054 36 1 3.5103 1.8200 -2.2473 37 1 3.6834 3.2887 -1.2568 38 1 5.0726 2.1992 -1.4833 39 1 3.6070 -0.4525 1.6807 40 1 4.1607 -2.6961 0.0917 41 1 5.7235 -1.9794 0.5524 42 1 7.3571 0.3090 3.9331 43 1 4.8689 -4.7922 1.3372 44 1 5.2005 -4.6822 3.1481 45 1 2.9355 -3.5935 3.4969 46 1 2.6039 -3.7035 1.6859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879851937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:59 Heat of formation + Delta-G solvation = -23.705914 kcal Electronic energy + Delta-G solvation = -24248.810001 eV Core-core repulsion = 21138.685310 eV Total energy + Delta-G solvation = -3110.124691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50166 -37.71191 -36.74867 -33.46666 -33.09521 -32.28236 -30.96102 -27.50659 -27.37424 -25.65135 -24.61646 -22.40849 -21.58749 -21.15083 -20.18121 -19.45486 -18.46480 -16.73353 -16.17601 -15.72500 -15.49213 -14.90254 -14.60069 -14.24765 -14.03869 -13.56350 -13.33380 -13.04855 -12.94678 -12.61513 -12.41825 -12.25685 -12.03926 -12.00859 -11.71464 -11.35048 -11.00521 -10.99265 -10.83079 -10.66008 -10.49800 -10.44164 -10.35380 -10.29087 -10.20639 -9.97975 -9.62567 -9.38246 -9.03574 -8.93130 -8.42181 -8.06764 -6.27099 -4.21080 3.20353 3.30799 3.36878 3.41068 3.83779 4.31475 4.66697 4.70799 4.72844 4.83828 5.21664 5.30237 5.32346 5.40320 5.43494 5.54933 5.57225 5.64812 5.69714 5.74047 5.79720 5.88208 5.90724 6.01386 6.07101 6.10540 6.13531 6.16535 6.22821 6.24476 6.27920 6.32956 6.42915 6.46173 6.47455 6.51381 6.55584 6.62303 6.65047 6.84681 7.07933 7.22511 7.62304 8.28131 8.38252 8.78325 8.89956 9.38602 10.83500 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.008112 C = 0.007125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.709709 B = 3450.783131 C = 3928.649349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.121 4.121 8 C -0.083 4.083 9 C -0.120 4.120 10 C 0.525 3.475 11 O -0.562 6.562 12 N -0.700 5.700 13 C 0.138 3.862 14 C -0.005 4.005 15 C -0.490 4.490 16 H 0.080 0.920 17 C 0.089 3.911 18 N -0.881 5.881 19 Si 0.880 3.120 20 H -0.273 1.273 21 H -0.301 1.301 22 H -0.265 1.265 23 C -0.202 4.202 24 C -0.188 4.188 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.410 0.590 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.266 0.734 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 5.112 -6.124 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.159 4.159 8 C -0.086 4.086 9 C -0.178 4.178 10 C 0.311 3.689 11 O -0.441 6.441 12 N -0.351 5.351 13 C 0.015 3.985 14 C -0.006 4.006 15 C -0.526 4.526 16 H 0.098 0.902 17 C -0.116 4.116 18 N -0.517 5.517 19 Si 0.712 3.288 20 H -0.200 1.200 21 H -0.229 1.229 22 H -0.191 1.191 23 C -0.240 4.240 24 C -0.225 4.225 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.248 0.752 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.353 4.971 -6.770 12.571 hybrid contribution 0.582 -0.093 -0.442 0.737 sum -8.771 4.878 -7.213 12.359 Atomic orbital electron populations 1.21746 0.95850 1.01392 1.01414 1.21998 0.95974 0.95982 1.03226 1.21841 0.92340 0.96647 0.98545 0.90424 1.22488 0.97762 0.98743 0.96687 1.22461 0.94444 0.97762 1.01140 1.22600 0.97962 0.99498 0.95824 1.21523 0.96153 0.92920 0.97967 1.21636 1.01854 0.98379 0.95892 1.20297 0.78044 0.87039 0.83513 1.90613 1.47395 1.76240 1.29870 1.46074 1.56658 1.16631 1.15770 1.21277 0.97265 0.83215 0.96707 1.19532 0.98272 0.89424 0.93376 1.20281 1.12578 1.24660 0.95124 0.90248 1.24884 0.96845 0.93701 0.96145 1.69918 1.26382 1.19855 1.35518 0.87080 0.78813 0.79499 0.83420 1.19973 1.22905 1.19077 1.23100 1.00580 0.99196 1.01166 1.22833 0.90733 1.08006 1.00927 0.92950 0.92577 0.93238 0.91887 0.90319 0.91709 0.90874 0.91809 0.91056 0.89408 0.91303 0.92207 0.92325 0.92368 0.75210 0.93056 0.92164 0.92374 0.91285 0.89408 0.89820 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.77 37.16 0.36 -1.29 16 2 C -0.13 -1.86 4.05 -26.73 -0.11 -1.97 16 3 C -0.07 -0.99 2.58 -89.50 -0.23 -1.22 16 4 H 0.08 0.93 7.67 -51.93 -0.40 0.54 16 5 C -0.12 -1.42 5.53 -25.07 -0.14 -1.55 16 6 C -0.12 -1.51 6.91 -24.74 -0.17 -1.68 16 7 C -0.12 -1.91 5.78 -25.07 -0.14 -2.05 16 8 C -0.08 -1.31 0.83 -154.54 -0.13 -1.44 16 9 C -0.12 -1.77 7.46 37.16 0.28 -1.49 16 10 C 0.52 10.44 4.50 -10.98 -0.05 10.39 16 11 O -0.56 -12.95 16.11 5.56 0.09 -12.87 16 12 N -0.70 -14.13 3.04 -60.30 -0.18 -14.31 16 13 C 0.14 3.04 4.36 -4.05 -0.02 3.02 16 14 C 0.00 -0.11 1.44 -155.66 -0.22 -0.33 16 15 C -0.49 -12.64 8.97 -34.44 -0.31 -12.95 16 16 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 17 C 0.09 2.38 5.33 -17.82 -0.10 2.29 16 18 N -0.88 -24.81 13.96 55.43 0.77 -24.04 16 19 Si 0.88 22.13 23.86 -169.99 -4.06 18.08 16 20 H -0.27 -7.04 7.00 56.52 0.40 -6.64 16 21 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.26 -6.55 6.41 56.52 0.36 -6.19 16 23 C -0.20 -4.12 9.96 -26.69 -0.27 -4.38 16 24 C -0.19 -3.61 9.93 -26.69 -0.26 -3.88 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.00 7.23 -51.93 -0.38 0.62 16 29 H 0.08 1.19 5.61 -51.93 -0.29 0.89 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.91 7.76 -51.93 -0.40 0.51 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.64 6.58 -51.93 -0.34 1.29 16 35 H 0.07 1.07 7.84 -51.93 -0.41 0.66 16 36 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 39 H 0.41 8.02 6.04 -40.82 -0.25 7.77 16 40 H 0.05 1.08 8.09 -51.93 -0.42 0.66 16 41 H 0.06 1.47 2.59 -51.93 -0.13 1.34 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 45 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -28.95 345.87 -7.76 -36.71 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.08 Total: 9.74 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.51 Total: -18.52 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.59 Total: -38.35 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.06 Total: 18.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.95 -7.76 -36.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879851937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.001 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds