Wall clock time and date at job start Tue Mar 31 2020 02:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46508 * 2 1 4 4 H 1.09001 * 110.02050 * 306.32727 * 3 2 1 5 5 C 1.54266 * 110.03390 * 67.77353 * 3 2 1 6 6 C 1.54893 * 104.19540 * 142.89017 * 5 3 2 7 7 C 1.54886 * 102.74967 * 322.05354 * 6 5 3 8 8 C 1.53882 * 110.02840 * 184.93511 * 3 2 1 9 9 C 1.52997 * 110.02956 * 121.38289 * 8 3 2 10 10 C 1.50701 * 110.03097 * 0.02562 * 8 3 2 11 11 O 1.21275 * 120.00024 * 109.97311 * 10 8 3 12 12 N 1.34778 * 119.99930 * 289.96917 * 10 8 3 13 13 C 1.46496 * 120.00360 * 185.58960 * 12 10 8 14 14 C 1.52997 * 109.47435 * 175.82238 * 13 12 10 15 15 C 1.50701 * 115.54811 * 305.12416 * 14 13 12 16 16 H 1.08001 * 120.00111 * 145.52038 * 15 14 13 17 17 C 1.37876 * 120.00139 * 325.52292 * 15 14 13 18 18 N 1.31510 * 120.00423 * 166.71385 * 17 15 14 19 19 Si 1.86805 * 119.99925 * 346.71341 * 17 15 14 20 20 H 1.48504 * 109.47152 * 95.70001 * 19 17 15 21 21 H 1.48500 * 109.47258 * 215.70137 * 19 17 15 22 22 H 1.48499 * 109.47135 * 335.70022 * 19 17 15 23 23 C 1.53003 * 117.50061 * 159.45883 * 14 13 12 24 24 C 1.53001 * 117.49937 * 90.79576 * 14 13 12 25 25 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46772 * 299.99501 * 1 2 3 27 27 H 1.08995 * 109.47436 * 59.99986 * 1 2 3 28 28 H 1.08999 * 109.46772 * 240.00499 * 2 1 3 29 29 H 1.08997 * 109.46700 * 119.99983 * 2 1 3 30 30 H 1.09003 * 110.48291 * 261.56605 * 5 3 2 31 31 H 1.08994 * 110.48691 * 24.21032 * 5 3 2 32 32 H 1.09001 * 110.75539 * 80.37488 * 6 5 3 33 33 H 1.09001 * 110.75044 * 203.73995 * 6 5 3 34 34 H 1.09002 * 110.48944 * 279.26517 * 7 6 5 35 35 H 1.08996 * 110.48334 * 156.61896 * 7 6 5 36 36 H 1.09000 * 109.47401 * 303.72160 * 9 8 3 37 37 H 1.08995 * 109.47111 * 63.72462 * 9 8 3 38 38 H 1.08998 * 109.47181 * 183.72425 * 9 8 3 39 39 H 0.97007 * 119.99586 * 5.58885 * 12 10 8 40 40 H 1.09005 * 109.46864 * 295.81819 * 13 12 10 41 41 H 1.09001 * 109.47115 * 55.81495 * 13 12 10 42 42 H 0.96996 * 120.00707 * 180.02562 * 18 17 15 43 43 H 1.08998 * 117.49492 * 359.97438 * 23 14 13 44 44 H 1.08992 * 117.50162 * 145.01757 * 23 14 13 45 45 H 1.09002 * 117.49734 * 214.97673 * 24 14 13 46 46 H 1.08993 * 117.49914 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5923 1.9965 -0.8251 5 6 1.6991 2.1235 1.3416 6 6 2.9272 3.0207 1.6349 7 6 4.1112 2.1501 1.1460 8 6 3.5736 1.4594 -0.1244 9 6 3.9899 2.2486 -1.3673 10 6 4.1003 0.0500 -0.2084 11 8 4.5670 -0.3619 -1.2493 12 7 4.0527 -0.7528 0.8731 13 6 4.6739 -2.0788 0.8291 14 6 4.5695 -2.7370 2.2063 15 6 5.1308 -1.9366 3.3533 16 1 4.6638 -1.9859 4.3258 17 6 6.2407 -1.1414 3.1611 18 7 6.5766 -0.2507 4.0685 19 14 7.2673 -1.3293 1.6118 20 1 6.8324 -0.3276 0.6053 21 1 8.6998 -1.1134 1.9380 22 1 7.0857 -2.6961 1.0604 23 6 4.7055 -4.2594 2.2740 24 6 3.3389 -3.6025 2.4843 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.7985 2.7296 1.2438 31 1 1.5750 1.3781 2.1271 32 1 2.8709 3.9500 1.0679 33 1 3.0115 3.2230 2.7027 34 1 4.3766 1.4089 1.8999 35 1 4.9708 2.7756 0.9054 36 1 3.5103 1.8200 -2.2473 37 1 3.6834 3.2887 -1.2568 38 1 5.0726 2.1992 -1.4833 39 1 3.6070 -0.4525 1.6807 40 1 4.1607 -2.6961 0.0917 41 1 5.7235 -1.9794 0.5524 42 1 7.3571 0.3090 3.9331 43 1 4.8689 -4.7922 1.3372 44 1 5.2005 -4.6822 3.1481 45 1 2.9355 -3.5935 3.4969 46 1 2.6039 -3.7035 1.6859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879851937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:58 Heat of formation + Delta-G solvation = -39.688281 kcal Electronic energy + Delta-G solvation = -24249.503049 eV Core-core repulsion = 21138.685310 eV Total energy + Delta-G solvation = -3110.817739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.89097 -39.23518 -38.34213 -35.03985 -34.38079 -34.20431 -32.10741 -29.06850 -28.51444 -27.44099 -26.02306 -23.56241 -23.11288 -22.55963 -21.34864 -21.14693 -20.04068 -18.50064 -17.65916 -17.56736 -16.91475 -16.34348 -15.83639 -15.76379 -15.40345 -15.18093 -14.87711 -14.64782 -14.23220 -14.13165 -13.93805 -13.48306 -13.36410 -13.32894 -13.01379 -12.85539 -12.55845 -12.43697 -12.18434 -12.09707 -11.88876 -11.84687 -11.57191 -11.49430 -11.45554 -11.33614 -11.31799 -11.27052 -10.76163 -10.65450 -10.33857 -9.77186 -8.39650 -6.31552 1.22606 1.31570 1.32569 1.67259 2.22559 2.29985 2.84960 3.44625 3.55047 3.59353 3.60853 3.94769 4.03928 4.15865 4.23210 4.28394 4.36609 4.42218 4.44658 4.47444 4.50332 4.60866 4.75053 4.76967 4.78322 4.89327 4.90453 4.93505 4.94357 4.97917 5.07792 5.15894 5.18039 5.20205 5.24125 5.28007 5.31723 5.40411 5.46260 5.48388 5.55164 5.58244 5.65798 6.27902 6.63303 6.73638 7.28484 7.30766 8.74720 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.008112 C = 0.007125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.709709 B = 3450.783131 C = 3928.649349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C -0.069 4.069 4 H 0.099 0.901 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.124 4.124 8 C -0.082 4.082 9 C -0.117 4.117 10 C 0.519 3.481 11 O -0.599 6.599 12 N -0.697 5.697 13 C 0.142 3.858 14 C -0.034 4.034 15 C -0.477 4.477 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.917 5.917 19 Si 0.924 3.076 20 H -0.290 1.290 21 H -0.308 1.308 22 H -0.258 1.258 23 C -0.195 4.195 24 C -0.159 4.159 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.034 0.966 39 H 0.412 0.588 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.266 5.600 -6.907 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C -0.087 4.087 4 H 0.118 0.882 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.162 4.162 8 C -0.085 4.085 9 C -0.174 4.174 10 C 0.307 3.693 11 O -0.481 6.481 12 N -0.348 5.348 13 C 0.018 3.982 14 C -0.036 4.036 15 C -0.515 4.515 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.555 5.555 19 Si 0.757 3.243 20 H -0.217 1.217 21 H -0.237 1.237 22 H -0.184 1.184 23 C -0.234 4.234 24 C -0.196 4.196 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.250 0.750 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.795 5.440 -7.543 15.020 hybrid contribution 1.321 -0.308 -0.180 1.369 sum -10.473 5.131 -7.723 13.988 Atomic orbital electron populations 1.21703 0.93494 1.01891 1.02689 1.21932 0.97997 0.95980 1.01104 1.21874 0.89896 0.96693 1.00252 0.88229 1.22477 0.98613 0.98607 0.95348 1.22455 0.92849 0.98160 1.01446 1.22577 0.99522 0.99192 0.94934 1.21647 0.98250 0.90102 0.98527 1.21647 1.00408 1.00180 0.95205 1.21096 0.77110 0.88447 0.82613 1.90580 1.49096 1.77280 1.31132 1.46069 1.56412 1.16265 1.16047 1.21135 0.96019 0.84321 0.96686 1.19437 1.01489 0.90333 0.92291 1.20365 1.11633 1.24337 0.95137 0.92959 1.25217 0.97711 0.93974 0.97291 1.69982 1.27232 1.21312 1.36977 0.86399 0.77411 0.79229 0.81294 1.21725 1.23693 1.18379 1.23137 1.01199 0.96997 1.02051 1.22866 0.90301 1.04470 1.01999 0.92954 0.91268 0.91910 0.94374 0.92054 0.88599 0.91816 0.89290 0.91058 0.93010 0.91728 0.92280 0.88907 0.94639 0.74966 0.91946 0.94712 0.92488 0.89364 0.89714 0.89492 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.77 71.99 0.70 -2.05 16 2 C -0.13 -3.45 4.05 30.60 0.12 -3.33 16 3 C -0.07 -1.63 2.58 -10.07 -0.03 -1.66 16 4 H 0.10 1.99 7.67 -2.39 -0.02 1.97 16 5 C -0.11 -2.33 5.53 31.67 0.18 -2.15 16 6 C -0.11 -2.52 6.91 31.89 0.22 -2.30 16 7 C -0.12 -3.87 5.78 31.67 0.18 -3.69 16 8 C -0.08 -2.54 0.83 -52.20 -0.04 -2.59 16 9 C -0.12 -3.29 7.46 71.98 0.54 -2.75 16 10 C 0.52 20.86 4.50 87.66 0.39 21.26 16 11 O -0.60 -28.14 16.11 -3.01 -0.05 -28.19 16 12 N -0.70 -28.44 3.04 -463.07 -1.41 -29.85 16 13 C 0.14 6.22 4.36 86.38 0.38 6.59 16 14 C -0.03 -1.50 1.44 -52.93 -0.08 -1.58 16 15 C -0.48 -24.93 8.97 25.60 0.23 -24.70 16 16 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 17 C 0.06 3.24 5.33 84.65 0.45 3.69 16 18 N -0.92 -53.13 13.96 21.45 0.30 -52.83 16 19 Si 0.92 47.09 23.86 68.60 1.64 48.73 16 20 H -0.29 -15.38 7.00 99.48 0.70 -14.68 16 21 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 22 H -0.26 -12.70 6.41 99.48 0.64 -12.06 16 23 C -0.20 -7.57 9.96 30.62 0.30 -7.26 16 24 C -0.16 -5.76 9.93 30.62 0.30 -5.45 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.18 7.51 -2.39 -0.02 1.17 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 1.17 7.23 -2.39 -0.02 1.16 16 29 H 0.06 1.79 5.61 -2.39 -0.01 1.78 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.45 7.76 -2.39 -0.02 1.43 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.99 6.58 -2.39 -0.02 1.97 16 35 H 0.06 2.01 7.84 -2.39 -0.02 1.99 16 36 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.03 1.13 8.13 -2.39 -0.02 1.12 16 39 H 0.41 16.41 6.04 -92.70 -0.56 15.85 16 40 H 0.06 2.57 8.09 -2.38 -0.02 2.55 16 41 H 0.04 1.72 2.59 -2.39 -0.01 1.72 16 42 H 0.27 14.80 8.31 -92.71 -0.77 14.02 16 43 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 45 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 46 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -64.20 345.87 4.64 -59.55 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.31 Total: 30.55 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 3.86 Total: -27.96 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.11 Total: -82.68 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.19 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.64 Total: 48.73 kcal Total: -64.20 4.64 -59.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879851937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.866 kcal (2) G-P(sol) polarization free energy of solvation -64.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds