Wall clock time and date at job start Tue Mar 31 2020 02:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46936 * 2 1 4 4 H 1.09002 * 110.01826 * 51.81944 * 3 2 1 5 5 C 1.54269 * 110.07322 * 290.40238 * 3 2 1 6 6 C 1.54885 * 104.19766 * 217.08671 * 5 3 2 7 7 C 1.54960 * 102.77844 * 37.91445 * 6 5 3 8 8 C 1.53873 * 110.03234 * 173.21431 * 3 2 1 9 9 C 1.53001 * 110.03148 * 238.66519 * 8 3 2 10 10 C 1.50706 * 110.03129 * 0.04559 * 8 3 2 11 11 O 1.21277 * 120.00000 * 246.68598 * 10 8 3 12 12 N 1.34772 * 119.99957 * 66.68814 * 10 8 3 13 13 C 1.46495 * 120.00293 * 185.26109 * 12 10 8 14 14 C 1.52997 * 109.47657 * 185.16743 * 13 12 10 15 15 C 1.50706 * 115.54801 * 302.32513 * 14 13 12 16 16 H 1.07996 * 119.99984 * 277.46047 * 15 14 13 17 17 C 1.37877 * 119.99809 * 97.45406 * 15 14 13 18 18 N 1.31518 * 119.99883 * 184.47639 * 17 15 14 19 19 Si 1.86796 * 120.00136 * 4.48332 * 17 15 14 20 20 H 1.48499 * 109.47577 * 85.30632 * 19 17 15 21 21 H 1.48507 * 109.47257 * 325.30668 * 19 17 15 22 22 H 1.48496 * 109.47246 * 205.30953 * 19 17 15 23 23 C 1.53002 * 117.52199 * 88.02541 * 14 13 12 24 24 C 1.52994 * 117.50357 * 156.65776 * 14 13 12 25 25 H 1.09006 * 109.47236 * 60.00360 * 1 2 3 26 26 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47734 * 300.00376 * 1 2 3 28 28 H 1.09001 * 109.47125 * 239.99988 * 2 1 3 29 29 H 1.09000 * 109.46897 * 119.99416 * 2 1 3 30 30 H 1.09006 * 110.48416 * 335.76244 * 5 3 2 31 31 H 1.08999 * 110.48678 * 98.40286 * 5 3 2 32 32 H 1.09001 * 110.75661 * 156.26028 * 6 5 3 33 33 H 1.09007 * 110.75433 * 279.62813 * 6 5 3 34 34 H 1.09002 * 110.53075 * 203.43494 * 7 6 5 35 35 H 1.09002 * 110.47665 * 80.76803 * 7 6 5 36 36 H 1.09003 * 109.46929 * 185.42076 * 9 8 3 37 37 H 1.08991 * 109.46938 * 305.42498 * 9 8 3 38 38 H 1.09005 * 109.46764 * 65.42732 * 9 8 3 39 39 H 0.97004 * 119.99832 * 5.25265 * 12 10 8 40 40 H 1.09001 * 109.47284 * 65.16545 * 13 12 10 41 41 H 1.09001 * 109.46873 * 305.16605 * 13 12 10 42 42 H 0.97002 * 119.99439 * 179.97438 * 18 17 15 43 43 H 1.08993 * 117.49697 * 214.97509 * 23 14 13 44 44 H 1.08999 * 117.49319 * 359.97438 * 23 14 13 45 45 H 1.09004 * 117.49739 * 359.97438 * 24 14 13 46 46 H 1.09004 * 117.50185 * 144.99799 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5674 2.0054 0.8051 5 6 1.7402 2.1101 -1.3581 6 6 2.9766 3.0046 -1.6228 7 6 4.1461 2.1396 -1.0887 8 6 3.5691 1.4611 0.1708 9 6 3.9474 2.2626 1.4179 10 6 4.0929 0.0525 0.2843 11 8 4.5832 -0.3300 1.3255 12 7 4.0165 -0.7819 -0.7713 13 6 4.4187 -2.1833 -0.6279 14 6 4.3585 -2.8734 -1.9920 15 6 3.0178 -2.8386 -2.6794 16 1 2.2584 -3.5608 -2.4187 17 6 2.7607 -1.8844 -3.6409 18 7 1.5631 -1.7978 -4.1776 19 14 4.1133 -0.7151 -4.1815 20 1 4.9251 -1.3558 -5.2471 21 1 4.9834 -0.3945 -3.0216 22 1 3.5067 0.5350 -4.7055 23 6 5.6066 -2.8058 -2.8743 24 6 5.2225 -4.1201 -2.1918 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6400 1.3568 -2.1396 31 1 0.8370 2.7169 -1.2938 32 1 3.0934 3.1963 -2.6895 33 1 2.9032 3.9394 -1.0670 34 1 4.9978 2.7676 -0.8274 35 1 4.4349 1.3913 -1.8268 36 1 5.0322 2.3515 1.4774 37 1 3.5041 3.2565 1.3593 38 1 3.5757 1.7506 2.3055 39 1 3.6950 -0.4546 -1.6260 40 1 3.7431 -2.6863 0.0639 41 1 5.4367 -2.2313 -0.2411 42 1 1.3822 -1.1262 -4.8538 43 1 5.4580 -2.7360 -3.9518 44 1 6.4709 -2.2690 -2.4831 45 1 5.8343 -4.4484 -1.3515 46 1 4.8213 -4.9151 -2.8205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879851939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:07 Heat of formation + Delta-G solvation = -30.130284 kcal Electronic energy + Delta-G solvation = -24449.325797 eV Core-core repulsion = 21338.922525 eV Total energy + Delta-G solvation = -3110.403273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.49316 -37.69734 -36.83849 -33.48671 -32.88686 -32.24416 -30.97030 -27.43000 -27.10230 -25.69444 -24.69647 -22.24295 -21.92642 -21.20675 -20.12460 -19.31408 -18.52246 -16.78877 -16.09876 -15.58671 -15.27177 -14.76759 -14.52794 -14.33645 -14.17790 -13.59396 -13.16955 -12.98997 -12.73220 -12.56350 -12.36717 -12.31611 -12.25669 -11.88595 -11.63481 -11.35259 -11.25629 -10.94178 -10.88115 -10.81452 -10.51103 -10.35164 -10.33944 -10.24140 -10.09756 -10.04303 -9.60452 -9.31584 -9.08487 -8.72229 -8.62028 -8.10143 -6.26538 -4.28548 3.07605 3.18040 3.22472 3.23602 3.85020 4.19996 4.68587 4.71867 4.77687 4.91323 5.02130 5.31836 5.37700 5.45985 5.52748 5.56683 5.65053 5.68556 5.74509 5.84826 5.88988 5.93538 6.00371 6.04281 6.05752 6.06530 6.14310 6.23058 6.28220 6.32863 6.34242 6.37795 6.40153 6.50700 6.52900 6.59534 6.63954 6.69840 6.90222 6.92377 6.99420 7.21911 7.59746 8.27048 8.35555 8.78418 8.86185 9.33954 10.84846 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.008668 C = 0.007738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.156386 B = 3229.423891 C = 3617.662084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C -0.075 4.075 4 H 0.078 0.922 5 C -0.124 4.124 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.084 4.084 9 C -0.119 4.119 10 C 0.522 3.478 11 O -0.562 6.562 12 N -0.704 5.704 13 C 0.157 3.843 14 C -0.017 4.017 15 C -0.486 4.486 16 H 0.083 0.917 17 C 0.077 3.923 18 N -0.887 5.887 19 Si 0.861 3.139 20 H -0.277 1.277 21 H -0.252 1.252 22 H -0.292 1.292 23 C -0.210 4.210 24 C -0.171 4.171 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.405 0.595 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 8.714 5.120 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.162 4.162 6 C -0.161 4.161 7 C -0.161 4.161 8 C -0.088 4.088 9 C -0.177 4.177 10 C 0.308 3.692 11 O -0.442 6.442 12 N -0.357 5.357 13 C 0.033 3.967 14 C -0.018 4.018 15 C -0.524 4.524 16 H 0.101 0.899 17 C -0.126 4.126 18 N -0.523 5.523 19 Si 0.690 3.310 20 H -0.204 1.204 21 H -0.177 1.177 22 H -0.219 1.219 23 C -0.247 4.247 24 C -0.209 4.209 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.244 0.756 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.130 8.511 5.702 10.464 hybrid contribution 0.595 0.680 -0.970 1.326 sum 2.724 9.191 4.731 10.691 Atomic orbital electron populations 1.21685 0.95847 1.01721 1.00748 1.22057 0.96282 0.95143 1.03887 1.21856 0.91938 0.97492 0.98086 0.90407 1.22542 0.97587 0.98881 0.97153 1.22509 0.94715 0.98078 1.00789 1.22635 0.98367 0.99187 0.95905 1.21543 0.96694 0.93009 0.97510 1.21636 1.01443 0.98448 0.96126 1.20295 0.78125 0.87122 0.83635 1.90609 1.46156 1.77971 1.29416 1.46372 1.65093 1.10725 1.13504 1.20931 0.97919 0.80567 0.97290 1.19689 0.91968 0.97159 0.92956 1.20292 0.96004 1.16177 1.19885 0.89922 1.25012 0.95008 0.96707 0.95866 1.69870 1.19996 1.34783 1.27675 0.87379 0.82800 0.80587 0.80216 1.20377 1.17741 1.21900 1.23049 1.00033 1.02371 0.99228 1.22855 1.04083 0.91836 1.02106 0.92690 0.92605 0.93823 0.88845 0.92285 0.90591 0.91363 0.91421 0.91310 0.90903 0.91241 0.92515 0.92331 0.91787 0.75555 0.92049 0.93407 0.92361 0.89373 0.90593 0.90654 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.78 37.16 0.36 -1.88 16 2 C -0.14 -2.39 4.01 -26.73 -0.11 -2.50 16 3 C -0.07 -1.14 2.56 -89.50 -0.23 -1.37 16 4 H 0.08 1.05 7.67 -51.93 -0.40 0.66 16 5 C -0.12 -1.80 5.63 -25.07 -0.14 -1.94 16 6 C -0.12 -1.63 6.91 -24.70 -0.17 -1.80 16 7 C -0.12 -1.86 5.78 -25.03 -0.14 -2.00 16 8 C -0.08 -1.35 0.83 -154.54 -0.13 -1.48 16 9 C -0.12 -1.67 7.56 37.16 0.28 -1.39 16 10 C 0.52 10.27 4.65 -10.98 -0.05 10.22 16 11 O -0.56 -12.35 15.93 5.56 0.09 -12.26 16 12 N -0.70 -14.55 3.03 -60.30 -0.18 -14.73 16 13 C 0.16 3.32 5.57 -4.05 -0.02 3.29 16 14 C -0.02 -0.37 1.45 -155.66 -0.23 -0.59 16 15 C -0.49 -12.50 9.14 -34.44 -0.31 -12.82 16 16 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 17 C 0.08 2.00 5.18 -17.82 -0.09 1.91 16 18 N -0.89 -24.56 13.96 55.43 0.77 -23.79 16 19 Si 0.86 19.70 21.97 -169.99 -3.73 15.97 16 20 H -0.28 -6.44 6.69 56.52 0.38 -6.06 16 21 H -0.25 -5.43 4.91 56.52 0.28 -5.15 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.21 -4.36 7.04 -26.73 -0.19 -4.54 16 24 C -0.17 -3.35 9.95 -26.73 -0.27 -3.62 16 25 H 0.05 0.85 7.58 -51.93 -0.39 0.45 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.94 5.70 -51.93 -0.30 1.64 16 29 H 0.06 1.10 7.13 -51.93 -0.37 0.73 16 30 H 0.08 1.30 7.73 -51.93 -0.40 0.90 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.07 0.96 7.83 -51.93 -0.41 0.56 16 35 H 0.07 1.20 5.51 -51.93 -0.29 0.91 16 36 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 39 H 0.40 8.55 2.48 -40.82 -0.10 8.45 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.09 1.93 5.40 -51.93 -0.28 1.65 16 44 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -27.88 338.53 -7.51 -35.39 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -8.12 Total: 14.84 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.44 Total: -20.51 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.59 Total: -38.52 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -3.73 Total: 15.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.88 -7.51 -35.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879851939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.256 kcal (2) G-P(sol) polarization free energy of solvation -27.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds