Wall clock time and date at job start Tue Mar 31 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47485 * 2 1 4 4 H 1.08994 * 110.05455 * 53.57977 * 3 2 1 5 5 C 1.54267 * 110.02636 * 292.16120 * 3 2 1 6 6 C 1.54890 * 104.19414 * 217.10061 * 5 3 2 7 7 C 1.54889 * 102.74479 * 37.94821 * 6 5 3 8 8 C 1.53873 * 110.03469 * 174.99687 * 3 2 1 9 9 C 1.53003 * 110.07226 * 359.97438 * 8 3 2 10 10 C 1.50695 * 110.03369 * 238.56849 * 8 3 2 11 11 O 1.21285 * 119.99927 * 6.91829 * 10 8 3 12 12 N 1.34778 * 120.00031 * 186.91916 * 10 8 3 13 13 C 1.46500 * 119.99734 * 175.59731 * 12 10 8 14 14 C 1.53000 * 109.47164 * 185.09685 * 13 12 10 15 15 C 1.50707 * 115.55038 * 281.42464 * 14 13 12 16 16 H 1.07998 * 119.99857 * 146.84739 * 15 14 13 17 17 C 1.37878 * 119.99886 * 326.85673 * 15 14 13 18 18 N 1.31513 * 119.99613 * 164.24661 * 17 15 14 19 19 Si 1.86801 * 119.99962 * 344.24509 * 17 15 14 20 20 H 1.48490 * 109.47080 * 95.76748 * 19 17 15 21 21 H 1.48503 * 109.46960 * 215.76865 * 19 17 15 22 22 H 1.48502 * 109.47081 * 335.76578 * 19 17 15 23 23 C 1.53001 * 117.49970 * 135.71515 * 14 13 12 24 24 C 1.53002 * 117.49719 * 67.09187 * 14 13 12 25 25 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47633 * 300.00522 * 1 2 3 27 27 H 1.09011 * 109.46805 * 60.00574 * 1 2 3 28 28 H 1.08996 * 109.47633 * 239.99477 * 2 1 3 29 29 H 1.09007 * 109.46745 * 119.99920 * 2 1 3 30 30 H 1.09009 * 110.48539 * 98.42824 * 5 3 2 31 31 H 1.08998 * 110.60549 * 335.84303 * 5 3 2 32 32 H 1.08993 * 110.75910 * 279.62979 * 6 5 3 33 33 H 1.09003 * 110.75580 * 156.26141 * 6 5 3 34 34 H 1.08998 * 110.48506 * 203.37491 * 7 6 5 35 35 H 1.09000 * 110.48776 * 80.73461 * 7 6 5 36 36 H 1.09001 * 109.47418 * 299.58750 * 9 8 3 37 37 H 1.08996 * 109.47108 * 59.59076 * 9 8 3 38 38 H 1.08999 * 109.46989 * 179.58761 * 9 8 3 39 39 H 0.96989 * 120.00175 * 355.60295 * 12 10 8 40 40 H 1.09000 * 109.47388 * 65.09852 * 13 12 10 41 41 H 1.09002 * 109.47607 * 305.09684 * 13 12 10 42 42 H 0.96998 * 119.99430 * 179.97438 * 18 17 15 43 43 H 1.08994 * 117.49627 * 0.02562 * 23 14 13 44 44 H 1.09002 * 117.49486 * 145.02415 * 23 14 13 45 45 H 1.09004 * 117.49764 * 214.98120 * 24 14 13 46 46 H 1.08998 * 117.49795 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9975 0.8239 5 6 1.7007 2.1228 -1.3423 6 6 2.9290 3.0199 -1.6346 7 6 4.1124 2.1494 -1.1440 8 6 3.5735 1.4594 0.1261 9 6 4.1090 0.0287 0.2127 10 6 3.9823 2.2381 1.3497 11 8 3.1394 2.6298 2.1289 12 7 5.2846 2.4993 1.5783 13 6 5.6751 3.3376 2.7145 14 6 7.1851 3.5806 2.6739 15 6 8.0400 2.4434 3.1711 16 1 9.0090 2.2631 2.7294 17 6 7.5851 1.6331 4.1897 18 7 8.1652 0.4750 4.4175 19 14 6.1449 2.1802 5.2460 20 1 4.8897 1.5900 4.7157 21 1 6.3546 1.7241 6.6436 22 1 6.0455 3.6617 5.2184 23 6 7.6790 5.0043 2.9384 24 6 7.7339 4.4261 1.5229 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 0.7999 2.7291 -1.2458 31 1 1.5759 1.3786 -2.1288 32 1 2.8722 3.9493 -1.0681 33 1 3.0146 3.2218 -2.7024 34 1 4.9718 2.7749 -0.9027 35 1 4.3786 1.4079 -1.8973 36 1 3.6892 -0.4639 1.0897 37 1 3.8237 -0.5209 -0.6842 38 1 5.1957 0.0519 0.2943 39 1 5.9633 2.1324 0.9905 40 1 5.4131 2.8337 3.6448 41 1 5.1519 4.2922 2.6586 42 1 7.8454 -0.0949 5.1343 43 1 6.9281 5.7678 3.1418 44 1 8.6224 5.1187 3.4723 45 1 8.7135 4.1602 1.1255 46 1 7.0192 4.8089 0.7944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879851940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:10 Heat of formation + Delta-G solvation = -26.983731 kcal Electronic energy + Delta-G solvation = -23465.266307 eV Core-core repulsion = 20354.999479 eV Total energy + Delta-G solvation = -3110.266828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45935 -37.95761 -36.74198 -33.69799 -32.95760 -32.30226 -31.46381 -27.67095 -27.10160 -25.44679 -24.87626 -23.06396 -21.69963 -21.30641 -19.94769 -19.40235 -18.18617 -17.16658 -16.14125 -15.86638 -15.55546 -15.11279 -14.69749 -14.31532 -13.95529 -13.74320 -13.57132 -13.23327 -13.12487 -12.98473 -12.49033 -12.32937 -12.13305 -12.02002 -11.44662 -11.41649 -11.02916 -10.99084 -10.97244 -10.69942 -10.64125 -10.56437 -10.45865 -10.35328 -10.18589 -10.09161 -9.65321 -9.39514 -9.15717 -8.98839 -8.42543 -8.17209 -6.26430 -4.18635 3.12176 3.28070 3.38886 3.40244 3.69330 4.31337 4.49515 4.58306 4.69159 4.84028 5.10894 5.18594 5.25073 5.30703 5.32274 5.35921 5.49071 5.57060 5.62617 5.64464 5.67808 5.81540 5.85083 5.86503 5.89478 5.96714 5.97164 6.06658 6.11562 6.13197 6.16509 6.18693 6.28838 6.34560 6.42486 6.43375 6.49540 6.59586 6.65298 6.85090 7.04560 7.14405 7.63093 8.15721 8.37763 8.76406 8.80251 9.39486 10.84745 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.005860 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.395174 B = 4776.974130 C = 5361.178226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.096 0.904 5 C -0.115 4.115 6 C -0.125 4.125 7 C -0.114 4.114 8 C -0.079 4.079 9 C -0.141 4.141 10 C 0.518 3.482 11 O -0.554 6.554 12 N -0.703 5.703 13 C 0.148 3.852 14 C -0.005 4.005 15 C -0.490 4.490 16 H 0.079 0.921 17 C 0.083 3.917 18 N -0.881 5.881 19 Si 0.884 3.116 20 H -0.276 1.276 21 H -0.298 1.298 22 H -0.265 1.265 23 C -0.201 4.201 24 C -0.187 4.187 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.406 0.594 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.267 0.733 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 0.900 -12.476 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.101 4.101 4 H 0.114 0.886 5 C -0.152 4.152 6 C -0.163 4.163 7 C -0.152 4.152 8 C -0.083 4.083 9 C -0.198 4.198 10 C 0.303 3.697 11 O -0.433 6.433 12 N -0.352 5.352 13 C 0.025 3.975 14 C -0.007 4.007 15 C -0.527 4.527 16 H 0.097 0.903 17 C -0.122 4.122 18 N -0.516 5.516 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.227 1.227 22 H -0.190 1.190 23 C -0.239 4.239 24 C -0.225 4.225 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.241 0.759 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.425 1.009 -11.790 16.448 hybrid contribution -0.309 0.104 0.500 0.597 sum -11.734 1.113 -11.290 16.321 Atomic orbital electron populations 1.21795 0.96239 1.01123 1.01745 1.21745 0.95417 0.96281 1.02028 1.21848 0.92601 0.96713 0.98975 0.88568 1.22420 0.97756 0.98333 0.96735 1.22488 0.94810 0.98437 1.00560 1.22510 0.98286 0.98852 0.95522 1.21384 0.97029 0.96219 0.93628 1.21985 1.01504 0.93783 1.02513 1.20421 0.82607 0.79784 0.86858 1.90609 1.50903 1.53685 1.48063 1.45883 1.06988 1.51515 1.30820 1.21307 0.94882 0.92965 0.88324 1.19543 0.90519 0.91431 0.99159 1.20277 1.03816 1.09698 1.18881 0.90252 1.24960 0.96511 0.93810 0.96894 1.69937 1.42259 1.08665 1.30748 0.86911 0.82449 0.80065 0.78989 1.20386 1.22674 1.18993 1.23130 1.02679 0.99055 0.99058 1.22778 1.01815 1.06912 0.90971 0.93129 0.92785 0.92880 0.91910 0.91546 0.91901 0.91643 0.91561 0.91511 0.90920 0.90539 0.91816 0.91354 0.91775 0.75902 0.92671 0.92893 0.92328 0.91246 0.89355 0.89736 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.77 37.15 0.36 -1.18 16 2 C -0.12 -1.35 4.11 -26.73 -0.11 -1.46 16 3 C -0.08 -1.09 2.52 -89.50 -0.23 -1.32 16 4 H 0.10 1.56 6.42 -51.93 -0.33 1.22 16 5 C -0.11 -1.25 5.53 -25.07 -0.14 -1.39 16 6 C -0.13 -1.39 6.91 -24.74 -0.17 -1.56 16 7 C -0.11 -1.36 5.80 -25.07 -0.15 -1.51 16 8 C -0.08 -1.14 0.78 -154.55 -0.12 -1.26 16 9 C -0.14 -1.87 7.16 37.16 0.27 -1.61 16 10 C 0.52 9.85 6.47 -10.99 -0.07 9.78 16 11 O -0.55 -12.48 15.24 5.55 0.08 -12.39 16 12 N -0.70 -13.83 5.07 -60.29 -0.31 -14.13 16 13 C 0.15 3.31 4.62 -4.04 -0.02 3.29 16 14 C -0.01 -0.12 1.30 -155.66 -0.20 -0.32 16 15 C -0.49 -13.05 9.57 -34.44 -0.33 -13.38 16 16 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 17 C 0.08 2.30 5.40 -17.82 -0.10 2.21 16 18 N -0.88 -25.80 13.96 55.43 0.77 -25.03 16 19 Si 0.88 22.56 24.32 -169.99 -4.13 18.43 16 20 H -0.28 -7.28 6.87 56.52 0.39 -6.89 16 21 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 22 H -0.26 -6.55 6.80 56.52 0.38 -6.16 16 23 C -0.20 -4.10 9.88 -26.73 -0.26 -4.37 16 24 C -0.19 -3.60 9.94 -26.73 -0.27 -3.86 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.49 7.51 -51.92 -0.39 0.10 16 28 H 0.06 0.63 6.90 -51.93 -0.36 0.28 16 29 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 30 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.62 7.77 -51.93 -0.40 0.22 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.91 7.12 -51.93 -0.37 0.54 16 35 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 36 H 0.06 0.91 6.65 -51.93 -0.35 0.57 16 37 H 0.07 0.73 6.84 -51.93 -0.36 0.38 16 38 H 0.06 0.89 7.86 -51.93 -0.41 0.48 16 39 H 0.41 7.38 7.74 -40.82 -0.32 7.07 16 40 H 0.06 1.39 1.79 -51.93 -0.09 1.29 16 41 H 0.05 1.15 7.96 -51.93 -0.41 0.73 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 44 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 45 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -30.29 347.54 -7.79 -38.08 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.92 Total: 7.75 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -1.53 Total: -17.93 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.47 Total: -39.16 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.13 Total: 18.43 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.29 -7.79 -38.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879851940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.093 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds