Wall clock time and date at job start Tue Mar 31 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47485 * 2 1 4 4 H 1.08994 * 110.05455 * 53.57977 * 3 2 1 5 5 C 1.54267 * 110.02636 * 292.16120 * 3 2 1 6 6 C 1.54890 * 104.19414 * 217.10061 * 5 3 2 7 7 C 1.54889 * 102.74479 * 37.94821 * 6 5 3 8 8 C 1.53873 * 110.03469 * 174.99687 * 3 2 1 9 9 C 1.53003 * 110.07226 * 359.97438 * 8 3 2 10 10 C 1.50695 * 110.03369 * 238.56849 * 8 3 2 11 11 O 1.21285 * 119.99927 * 6.91829 * 10 8 3 12 12 N 1.34778 * 120.00031 * 186.91916 * 10 8 3 13 13 C 1.46500 * 119.99734 * 175.59731 * 12 10 8 14 14 C 1.53000 * 109.47164 * 185.09685 * 13 12 10 15 15 C 1.50707 * 115.55038 * 281.42464 * 14 13 12 16 16 H 1.07998 * 119.99857 * 146.84739 * 15 14 13 17 17 C 1.37878 * 119.99886 * 326.85673 * 15 14 13 18 18 N 1.31513 * 119.99613 * 164.24661 * 17 15 14 19 19 Si 1.86801 * 119.99962 * 344.24509 * 17 15 14 20 20 H 1.48490 * 109.47080 * 95.76748 * 19 17 15 21 21 H 1.48503 * 109.46960 * 215.76865 * 19 17 15 22 22 H 1.48502 * 109.47081 * 335.76578 * 19 17 15 23 23 C 1.53001 * 117.49970 * 135.71515 * 14 13 12 24 24 C 1.53002 * 117.49719 * 67.09187 * 14 13 12 25 25 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47633 * 300.00522 * 1 2 3 27 27 H 1.09011 * 109.46805 * 60.00574 * 1 2 3 28 28 H 1.08996 * 109.47633 * 239.99477 * 2 1 3 29 29 H 1.09007 * 109.46745 * 119.99920 * 2 1 3 30 30 H 1.09009 * 110.48539 * 98.42824 * 5 3 2 31 31 H 1.08998 * 110.60549 * 335.84303 * 5 3 2 32 32 H 1.08993 * 110.75910 * 279.62979 * 6 5 3 33 33 H 1.09003 * 110.75580 * 156.26141 * 6 5 3 34 34 H 1.08998 * 110.48506 * 203.37491 * 7 6 5 35 35 H 1.09000 * 110.48776 * 80.73461 * 7 6 5 36 36 H 1.09001 * 109.47418 * 299.58750 * 9 8 3 37 37 H 1.08996 * 109.47108 * 59.59076 * 9 8 3 38 38 H 1.08999 * 109.46989 * 179.58761 * 9 8 3 39 39 H 0.96989 * 120.00175 * 355.60295 * 12 10 8 40 40 H 1.09000 * 109.47388 * 65.09852 * 13 12 10 41 41 H 1.09002 * 109.47607 * 305.09684 * 13 12 10 42 42 H 0.96998 * 119.99430 * 179.97438 * 18 17 15 43 43 H 1.08994 * 117.49627 * 0.02562 * 23 14 13 44 44 H 1.09002 * 117.49486 * 145.02415 * 23 14 13 45 45 H 1.09004 * 117.49764 * 214.98120 * 24 14 13 46 46 H 1.08998 * 117.49795 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9975 0.8239 5 6 1.7007 2.1228 -1.3423 6 6 2.9290 3.0199 -1.6346 7 6 4.1124 2.1494 -1.1440 8 6 3.5735 1.4594 0.1261 9 6 4.1090 0.0287 0.2127 10 6 3.9823 2.2381 1.3497 11 8 3.1394 2.6298 2.1289 12 7 5.2846 2.4993 1.5783 13 6 5.6751 3.3376 2.7145 14 6 7.1851 3.5806 2.6739 15 6 8.0400 2.4434 3.1711 16 1 9.0090 2.2631 2.7294 17 6 7.5851 1.6331 4.1897 18 7 8.1652 0.4750 4.4175 19 14 6.1449 2.1802 5.2460 20 1 4.8897 1.5900 4.7157 21 1 6.3546 1.7241 6.6436 22 1 6.0455 3.6617 5.2184 23 6 7.6790 5.0043 2.9384 24 6 7.7339 4.4261 1.5229 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 0.7999 2.7291 -1.2458 31 1 1.5759 1.3786 -2.1288 32 1 2.8722 3.9493 -1.0681 33 1 3.0146 3.2218 -2.7024 34 1 4.9718 2.7749 -0.9027 35 1 4.3786 1.4079 -1.8973 36 1 3.6892 -0.4639 1.0897 37 1 3.8237 -0.5209 -0.6842 38 1 5.1957 0.0519 0.2943 39 1 5.9633 2.1324 0.9905 40 1 5.4131 2.8337 3.6448 41 1 5.1519 4.2922 2.6586 42 1 7.8454 -0.0949 5.1343 43 1 6.9281 5.7678 3.1418 44 1 8.6224 5.1187 3.4723 45 1 8.7135 4.1602 1.1255 46 1 7.0192 4.8089 0.7944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879851940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:10 Heat of formation + Delta-G solvation = -45.229600 kcal Electronic energy + Delta-G solvation = -23466.057507 eV Core-core repulsion = 20354.999479 eV Total energy + Delta-G solvation = -3111.058028 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.75053 -39.41944 -38.30998 -35.20059 -34.41252 -33.95994 -32.53821 -29.04119 -28.39406 -27.18995 -26.12504 -24.12700 -23.18576 -22.49214 -21.34627 -21.02838 -19.56452 -18.64995 -17.77616 -17.66123 -17.04839 -16.35567 -15.93617 -15.46915 -15.42621 -15.30047 -14.91719 -14.67909 -14.46905 -14.19239 -14.10554 -13.90665 -13.31984 -13.12815 -13.04118 -12.55982 -12.44012 -12.34535 -12.17881 -12.01199 -11.92090 -11.85586 -11.65435 -11.58527 -11.46375 -11.34986 -11.28950 -11.15607 -10.79311 -10.71988 -10.35371 -9.90705 -8.43462 -6.34114 1.21052 1.28768 1.33625 1.63839 2.19630 2.20905 2.81106 3.44193 3.48710 3.59918 3.72351 3.90598 4.07105 4.14113 4.18040 4.29639 4.38305 4.39913 4.42356 4.45918 4.49108 4.58846 4.72774 4.78334 4.79857 4.89056 4.91629 4.93933 4.94679 4.97242 5.05194 5.10742 5.17682 5.20260 5.24426 5.28742 5.36324 5.41901 5.44134 5.49043 5.52703 5.61700 5.63731 6.24040 6.59049 6.68716 7.24498 7.26090 8.71666 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.005860 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.395174 B = 4776.974130 C = 5361.178226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.084 4.084 4 H 0.059 0.941 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.076 4.076 9 C -0.138 4.138 10 C 0.511 3.489 11 O -0.595 6.595 12 N -0.701 5.701 13 C 0.151 3.849 14 C -0.037 4.037 15 C -0.478 4.478 16 H 0.052 0.948 17 C 0.042 3.958 18 N -0.923 5.923 19 Si 0.935 3.065 20 H -0.298 1.298 21 H -0.301 1.301 22 H -0.253 1.253 23 C -0.193 4.193 24 C -0.155 4.155 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.103 0.897 38 H 0.055 0.945 39 H 0.412 0.588 40 H 0.027 0.973 41 H 0.060 0.940 42 H 0.266 0.734 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.651 1.696 -15.398 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.103 4.103 4 H 0.077 0.923 5 C -0.145 4.145 6 C -0.161 4.161 7 C -0.148 4.148 8 C -0.080 4.080 9 C -0.196 4.196 10 C 0.299 3.701 11 O -0.477 6.477 12 N -0.351 5.351 13 C 0.028 3.972 14 C -0.038 4.038 15 C -0.516 4.516 16 H 0.070 0.930 17 C -0.158 4.158 18 N -0.561 5.561 19 Si 0.767 3.233 20 H -0.227 1.227 21 H -0.230 1.230 22 H -0.178 1.178 23 C -0.231 4.231 24 C -0.193 4.193 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.063 0.937 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.249 0.751 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.194 1.826 -14.728 19.208 hybrid contribution -0.041 -0.102 1.381 1.385 sum -12.236 1.724 -13.347 18.189 Atomic orbital electron populations 1.21776 0.95285 1.01935 1.01672 1.21737 0.96287 0.95039 1.02197 1.21834 0.91517 0.97691 0.99286 0.92307 1.22407 0.97750 0.98680 0.95662 1.22497 0.94375 0.97387 1.01854 1.22563 0.98260 0.99381 0.94611 1.21489 0.98029 0.96058 0.92381 1.22013 1.00760 0.93371 1.03412 1.21381 0.81747 0.79195 0.87808 1.90586 1.51852 1.55351 1.49864 1.45891 1.07649 1.51370 1.30195 1.21104 0.94739 0.93293 0.88103 1.19417 0.90091 0.91454 1.02881 1.20430 1.02985 1.10491 1.17647 0.93006 1.25433 0.98238 0.94023 0.98085 1.70017 1.44197 1.09934 1.31984 0.86100 0.79510 0.80176 0.77514 1.22720 1.22979 1.17759 1.23167 1.02809 0.97208 0.99944 1.22819 1.02200 1.03611 0.90627 0.91869 0.94458 0.91381 0.89527 0.93486 0.91676 0.89105 0.93538 0.88804 0.91599 0.87716 0.93673 0.87856 0.92613 0.75111 0.95546 0.92174 0.92418 0.89249 0.89612 0.89311 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.77 71.98 0.70 -2.09 16 2 C -0.12 -2.45 4.11 30.59 0.13 -2.33 16 3 C -0.08 -2.14 2.52 -10.07 -0.03 -2.16 16 4 H 0.06 1.95 6.42 -2.39 -0.02 1.94 16 5 C -0.11 -2.01 5.53 31.67 0.18 -1.84 16 6 C -0.12 -2.36 6.91 31.89 0.22 -2.14 16 7 C -0.11 -2.31 5.80 31.67 0.18 -2.13 16 8 C -0.08 -2.09 0.78 -52.21 -0.04 -2.13 16 9 C -0.14 -3.50 7.16 71.98 0.52 -2.98 16 10 C 0.51 19.53 6.47 87.66 0.57 20.10 16 11 O -0.60 -27.63 15.24 -3.05 -0.05 -27.67 16 12 N -0.70 -27.41 5.07 -463.06 -2.35 -29.76 16 13 C 0.15 6.69 4.62 86.38 0.40 7.09 16 14 C -0.04 -1.64 1.30 -52.92 -0.07 -1.71 16 15 C -0.48 -25.65 9.57 25.60 0.24 -25.40 16 16 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 17 C 0.04 2.41 5.40 84.66 0.46 2.86 16 18 N -0.92 -55.63 13.96 21.45 0.30 -55.33 16 19 Si 0.93 48.10 24.32 68.60 1.67 49.77 16 20 H -0.30 -16.20 6.87 99.48 0.68 -15.52 16 21 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 22 H -0.25 -12.30 6.80 99.48 0.68 -11.63 16 23 C -0.19 -7.40 9.88 30.60 0.30 -7.09 16 24 C -0.16 -5.51 9.94 30.60 0.30 -5.20 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.07 7.51 -2.38 -0.02 1.05 16 28 H 0.09 1.43 6.90 -2.39 -0.02 1.41 16 29 H 0.05 1.17 6.44 -2.38 -0.02 1.16 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.09 1.28 7.77 -2.39 -0.02 1.26 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.48 7.12 -2.39 -0.02 1.46 16 35 H 0.10 1.64 7.84 -2.39 -0.02 1.62 16 36 H 0.04 1.30 6.65 -2.39 -0.02 1.28 16 37 H 0.10 1.87 6.84 -2.39 -0.02 1.85 16 38 H 0.05 1.49 7.86 -2.39 -0.02 1.47 16 39 H 0.41 14.74 7.74 -92.72 -0.72 14.03 16 40 H 0.03 1.36 1.79 -2.39 0.00 1.35 16 41 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.09 3.09 8.09 -2.39 -0.02 3.07 16 44 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 45 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 46 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -68.01 347.54 3.82 -64.19 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.19 Total: 25.95 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 4.06 Total: -27.15 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.05 Total: -85.09 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.67 Total: 49.77 kcal Total: -68.01 3.82 -64.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879851940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.957 kcal (2) G-P(sol) polarization free energy of solvation -68.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds