Wall clock time and date at job start Tue Mar 31 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99636 * 2 1 4 4 N 1.46503 * 109.46921 * 126.42040 * 3 2 1 5 5 C 1.46498 * 119.99813 * 277.11073 * 4 3 2 6 6 C 1.50697 * 109.47548 * 270.00120 * 5 4 3 7 7 H 1.07993 * 119.99971 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00272 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99938 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00063 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47087 * 90.00605 * 10 8 6 12 12 H 1.48503 * 109.47400 * 210.00488 * 10 8 6 13 13 H 1.48500 * 109.47254 * 330.00564 * 10 8 6 14 14 C 1.34776 * 120.00238 * 97.11785 * 4 3 2 15 15 O 1.21278 * 120.00031 * 176.52348 * 14 4 3 16 16 C 1.50703 * 119.99752 * 356.52121 * 14 4 3 17 17 C 1.53001 * 110.05610 * 310.15114 * 16 14 4 18 18 C 1.54264 * 110.03053 * 188.73359 * 16 14 4 19 19 C 1.54894 * 104.19278 * 217.10745 * 18 16 14 20 20 C 1.54884 * 102.75004 * 37.94477 * 19 18 16 21 21 C 1.53880 * 110.02943 * 71.56618 * 16 14 4 22 22 H 1.09002 * 110.02902 * 238.61508 * 21 16 14 23 23 C 1.52995 * 110.03423 * 359.97438 * 21 16 14 24 24 C 1.52995 * 109.47109 * 183.69143 * 23 21 16 25 25 H 1.07997 * 119.99411 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00229 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00470 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47078 * 6.42116 * 3 2 1 29 29 H 1.08994 * 109.46660 * 246.41580 * 3 2 1 30 30 H 1.09008 * 109.47205 * 30.00397 * 5 4 3 31 31 H 1.09003 * 109.47245 * 150.00196 * 5 4 3 32 32 H 0.97003 * 119.99638 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46887 * 198.42228 * 17 16 14 34 34 H 1.09003 * 109.47151 * 318.42064 * 17 16 14 35 35 H 1.09001 * 109.46991 * 78.42114 * 17 16 14 36 36 H 1.09001 * 110.48450 * 335.78166 * 18 16 14 37 37 H 1.08997 * 110.48725 * 98.42844 * 18 16 14 38 38 H 1.09000 * 110.75215 * 156.25902 * 19 18 16 39 39 H 1.09003 * 110.75593 * 279.62520 * 19 18 16 40 40 H 1.09004 * 110.48502 * 203.37934 * 20 19 18 41 41 H 1.08994 * 110.49029 * 80.73648 * 20 19 18 42 42 H 1.08999 * 109.47542 * 303.69733 * 23 21 16 43 43 H 1.09008 * 109.46823 * 63.69275 * 23 21 16 44 44 H 1.09005 * 109.47128 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.47836 * 300.00403 * 24 23 21 46 46 H 1.08998 * 109.47083 * 60.00479 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0178 1.3181 1.1115 5 6 2.5704 1.6873 2.4567 6 6 2.7173 3.1753 2.6444 7 1 3.1047 3.7851 1.8417 8 6 2.3561 3.7583 3.8405 9 7 1.8838 3.0157 4.8179 10 14 2.5376 5.6029 4.0728 11 1 1.2857 6.2805 3.6498 12 1 2.8009 5.8981 5.5041 13 1 3.6703 6.0965 3.2490 14 6 4.3073 0.9905 0.8964 15 8 5.1104 1.0620 1.8024 16 6 4.7513 0.5354 -0.4700 17 6 3.8212 -0.5652 -0.9843 18 6 6.2022 0.0150 -0.4080 19 6 6.8308 0.4830 -1.7441 20 6 6.2032 1.8847 -1.9448 21 6 4.7519 1.7242 -1.4471 22 1 4.0890 1.5173 -2.2872 23 6 4.3010 2.9958 -0.7257 24 6 4.2178 4.1486 -1.7281 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3607 2.1304 0.1149 29 1 2.6011 1.4142 -0.9418 30 1 1.5245 1.4068 2.5816 31 1 3.1772 1.1661 3.1972 32 1 1.6301 3.4259 5.6595 33 1 4.3129 -1.1088 -1.7911 34 1 3.5885 -1.2534 -0.1716 35 1 2.8997 -0.1176 -1.3565 36 1 6.7300 0.4566 0.4372 37 1 6.2148 -1.0728 -0.3408 38 1 7.9150 0.5540 -1.6568 39 1 6.5507 -0.1859 -2.5580 40 1 6.2166 2.1612 -2.9991 41 1 6.7313 2.6281 -1.3477 42 1 3.3206 2.8317 -0.2784 43 1 5.0196 3.2446 0.0554 44 1 3.8962 5.0545 -1.2142 45 1 5.1982 4.3128 -2.1754 46 1 3.4993 3.8999 -2.5091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880087592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:14 Heat of formation + Delta-G solvation = -27.318232 kcal Electronic energy + Delta-G solvation = -24195.396920 eV Core-core repulsion = 21085.115587 eV Total energy + Delta-G solvation = -3110.281333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18909 -38.56443 -37.51359 -35.19240 -34.34414 -33.55412 -32.30723 -29.37499 -28.43958 -27.31605 -26.58234 -25.06978 -23.29940 -21.79257 -21.34295 -20.94850 -19.11178 -18.61114 -17.56073 -17.22891 -16.64215 -16.47878 -16.23506 -15.56072 -15.23826 -14.77607 -14.61907 -14.35298 -14.30274 -14.05971 -13.61837 -13.45386 -13.32777 -13.07425 -12.89555 -12.79504 -12.67992 -12.50292 -12.31959 -12.23538 -12.07707 -11.91840 -11.83019 -11.68645 -11.42362 -11.33450 -11.24448 -11.09954 -10.64906 -10.34075 -10.27029 -9.39486 -8.22451 -6.36073 1.31859 1.34757 1.35341 1.45482 1.90874 2.33178 2.52446 3.06793 3.48141 3.58177 3.69804 3.98356 4.09374 4.24890 4.25342 4.34909 4.39302 4.40862 4.47934 4.54973 4.64704 4.76700 4.77979 4.84490 4.88352 4.96217 5.02915 5.05368 5.08147 5.09784 5.18920 5.21310 5.24083 5.25216 5.30857 5.39645 5.46150 5.52617 5.56504 5.60116 5.74281 5.78669 6.00015 6.07982 6.71830 6.83883 7.29485 7.54139 8.84691 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.006982 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.013660 B = 4009.471706 C = 4629.006026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.192 4.192 3 C 0.123 3.877 4 N -0.593 5.593 5 C 0.267 3.733 6 C -0.534 4.534 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.275 1.275 14 C 0.514 3.486 15 O -0.602 6.602 16 C -0.080 4.080 17 C -0.150 4.150 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.071 4.071 22 H 0.113 0.887 23 C -0.152 4.152 24 C -0.140 4.140 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.019 0.981 31 H -0.011 1.011 32 H 0.266 0.734 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.018 0.982 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -5.409 -20.103 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.211 4.211 3 C 0.002 3.998 4 N -0.323 5.323 5 C 0.145 3.855 6 C -0.572 4.572 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.786 3.214 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.200 1.200 14 C 0.304 3.696 15 O -0.484 6.484 16 C -0.083 4.083 17 C -0.206 4.206 18 C -0.151 4.151 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.090 4.090 22 H 0.131 0.869 23 C -0.190 4.190 24 C -0.197 4.197 25 H 0.135 0.865 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.037 0.963 31 H 0.007 0.993 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.037 0.963 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.157 -5.349 -19.437 20.275 hybrid contribution 0.053 1.016 1.586 1.884 sum 2.210 -4.333 -17.851 18.502 Atomic orbital electron populations 1.24059 0.95600 1.02766 0.98476 1.23723 0.96795 0.98808 1.01742 1.21211 0.92025 0.95958 0.90625 1.48132 1.08471 1.65579 1.10081 1.18623 0.93327 0.94240 0.79300 1.21698 1.42329 0.93597 0.99619 0.92668 1.25825 0.94779 1.03172 0.95374 1.70064 1.44484 1.37405 1.05016 0.85499 0.78868 0.79642 0.77346 1.18636 1.20697 1.19985 1.21236 0.81515 0.75819 0.91039 1.90597 1.53443 1.56401 1.47911 1.21593 0.98039 0.98083 0.90594 1.22646 0.99798 0.96748 1.01422 1.22396 0.92950 1.00667 0.99066 1.22469 0.99818 0.96454 0.96037 1.22434 0.93628 0.97313 1.01804 1.21924 0.99154 0.91412 0.96491 0.86924 1.22279 1.02116 0.96486 0.98072 1.21696 1.02615 0.96706 0.98668 0.86487 0.88583 0.85810 0.91306 0.86177 0.96337 0.99257 0.92552 0.88871 0.93453 0.88972 0.93732 0.90648 0.90989 0.88615 0.88541 0.93667 0.90509 0.96316 0.94337 0.91739 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 14.32 67.78 0.97 -3.21 16 2 C -0.19 -5.26 7.90 25.65 0.20 -5.05 16 3 C 0.12 3.98 3.38 85.63 0.29 4.27 16 4 N -0.59 -25.89 1.66 -830.49 -1.38 -27.26 16 5 C 0.27 14.90 5.14 85.63 0.44 15.34 16 6 C -0.53 -31.56 9.39 25.60 0.24 -31.32 16 7 H 0.06 3.23 7.57 -2.91 -0.02 3.21 16 8 C 0.01 0.42 5.46 84.65 0.46 0.88 16 9 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 10 Si 0.96 46.29 29.54 68.60 2.03 48.32 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 13 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 14 C 0.51 22.40 4.68 87.66 0.41 22.81 16 15 O -0.60 -33.24 15.00 -3.02 -0.05 -33.29 16 16 C -0.08 -2.37 0.61 -52.20 -0.03 -2.41 16 17 C -0.15 -3.32 6.38 71.98 0.46 -2.86 16 18 C -0.11 -3.22 5.68 31.67 0.18 -3.04 16 19 C -0.11 -2.20 6.91 31.88 0.22 -1.98 16 20 C -0.11 -2.45 5.47 31.67 0.17 -2.28 16 21 C -0.07 -1.77 1.66 -10.07 -0.02 -1.79 16 22 H 0.11 2.03 7.10 -2.39 -0.02 2.02 16 23 C -0.15 -4.92 3.79 30.59 0.12 -4.80 16 24 C -0.14 -3.49 9.75 71.98 0.70 -2.79 16 25 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 26 H 0.10 2.36 7.85 -2.91 -0.02 2.34 16 27 H 0.12 3.16 5.44 -2.91 -0.02 3.14 16 28 H 0.07 2.38 7.78 -2.39 -0.02 2.36 16 29 H 0.12 3.14 2.95 -2.39 -0.01 3.13 16 30 H 0.02 1.06 8.07 -2.38 -0.02 1.04 16 31 H -0.01 -0.70 7.47 -2.39 -0.02 -0.72 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 34 H 0.05 1.19 6.73 -2.39 -0.02 1.17 16 35 H 0.09 1.82 3.79 -2.39 -0.01 1.81 16 36 H 0.04 1.65 6.78 -2.39 -0.02 1.63 16 37 H 0.07 1.92 7.84 -2.39 -0.02 1.90 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.04 1.18 7.78 -2.39 -0.02 1.16 16 42 H 0.08 2.78 3.40 -2.39 -0.01 2.77 16 43 H 0.02 0.76 7.59 -2.38 -0.02 0.74 16 44 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.06 1.41 7.46 -2.39 -0.02 1.39 16 46 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -76.42 342.02 6.66 -69.76 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.95 Total: 18.19 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.82 Total: -18.23 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.09 Total: -84.76 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.05 Total: -33.29 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -76.42 6.66 -69.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880087592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.443 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds