Wall clock time and date at job start Tue Mar 31 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99911 * 2 1 4 4 N 1.46500 * 109.47177 * 126.58206 * 3 2 1 5 5 C 1.46496 * 120.00174 * 94.66189 * 4 3 2 6 6 C 1.50697 * 109.47211 * 82.87632 * 5 4 3 7 7 H 1.08004 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00173 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00358 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00013 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46968 * 59.99756 * 10 8 6 12 12 H 1.48499 * 109.47170 * 300.00157 * 10 8 6 13 13 H 1.48496 * 109.46997 * 179.97438 * 10 8 6 14 14 C 1.34779 * 119.99977 * 274.66919 * 4 3 2 15 15 O 1.21286 * 120.00147 * 6.46365 * 14 4 3 16 16 C 1.50703 * 120.00044 * 186.47343 * 14 4 3 17 17 C 1.52997 * 110.01612 * 48.64716 * 16 14 4 18 18 C 1.54268 * 110.03065 * 170.03887 * 16 14 4 19 19 C 1.54962 * 104.15622 * 142.86440 * 18 16 14 20 20 C 1.54887 * 102.77946 * 322.10785 * 19 18 16 21 21 C 1.53869 * 110.02951 * 287.25835 * 16 14 4 22 22 H 1.08995 * 110.03866 * 121.38577 * 21 16 14 23 23 C 1.53003 * 110.03617 * 359.97438 * 21 16 14 24 24 C 1.52991 * 109.47455 * 174.19803 * 23 21 16 25 25 H 1.07998 * 119.99817 * 5.03373 * 1 2 3 26 26 H 1.08002 * 119.99685 * 185.03930 * 1 2 3 27 27 H 1.08000 * 119.99967 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47168 * 6.58199 * 3 2 1 29 29 H 1.09003 * 109.47331 * 246.58159 * 3 2 1 30 30 H 1.09001 * 109.47145 * 322.87835 * 5 4 3 31 31 H 1.08998 * 109.47494 * 202.87508 * 5 4 3 32 32 H 0.97001 * 119.99502 * 0.02562 * 9 8 6 33 33 H 1.09003 * 109.47500 * 44.03704 * 17 16 14 34 34 H 1.09002 * 109.46888 * 164.03967 * 17 16 14 35 35 H 1.09003 * 109.47461 * 284.03299 * 17 16 14 36 36 H 1.09006 * 110.48530 * 261.57013 * 18 16 14 37 37 H 1.08998 * 110.48655 * 24.21519 * 18 16 14 38 38 H 1.09000 * 110.76481 * 203.77480 * 19 18 16 39 39 H 1.08999 * 110.88325 * 80.49926 * 19 18 16 40 40 H 1.09000 * 110.48854 * 279.24158 * 20 19 18 41 41 H 1.09004 * 110.49008 * 156.59684 * 20 19 18 42 42 H 1.09006 * 109.46847 * 294.19782 * 23 21 16 43 43 H 1.09001 * 109.46894 * 54.19495 * 23 21 16 44 44 H 1.08999 * 109.47436 * 180.02562 * 24 23 21 45 45 H 1.09003 * 109.47003 * 300.00359 * 24 23 21 46 46 H 1.09001 * 109.47322 * 59.99954 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0206 1.3164 1.1091 5 6 4.4093 0.9089 0.8825 6 6 5.1900 2.0721 0.3272 7 1 4.7005 3.0201 0.1594 8 6 6.5289 1.9259 0.0323 9 7 7.1249 0.7714 0.2361 10 14 7.4964 3.3677 -0.6567 11 1 7.4629 4.4938 0.3107 12 1 6.8913 3.8010 -1.9417 13 1 8.9041 2.9546 -0.8863 14 6 2.6233 1.7017 2.3381 15 8 1.4511 1.9262 2.5539 16 6 3.6357 1.8538 3.4440 17 6 4.8258 2.6813 2.9544 18 6 2.9853 2.5351 4.6657 19 6 3.6304 1.8259 5.8832 20 6 3.7378 0.3562 5.4062 21 6 4.1143 0.4692 3.9144 22 1 5.1945 0.3866 3.7941 23 6 3.4121 -0.6285 3.1126 24 6 4.0006 -1.9900 3.4878 25 1 -0.5400 0.9317 -0.0821 26 1 -0.5400 -0.9317 0.0822 27 1 1.8500 -0.9353 -0.0004 28 1 1.3610 2.1302 0.1178 29 1 2.5989 1.4156 -0.9430 30 1 4.4342 0.0825 0.1722 31 1 4.8532 0.5907 1.8258 32 1 6.6224 0.0227 0.5935 33 1 4.4634 3.5414 2.3915 34 1 5.4058 3.0256 3.8107 35 1 5.4564 2.0663 2.3122 36 1 3.2170 3.6002 4.6769 37 1 1.9066 2.3784 4.6606 38 1 2.9871 1.9014 6.7599 39 1 4.6177 2.2367 6.0939 40 1 2.7808 -0.1529 5.5206 41 1 4.5181 -0.1680 5.9580 42 1 2.3460 -0.6185 3.3394 43 1 3.5587 -0.4504 2.0472 44 1 3.5007 -2.7719 2.9162 45 1 5.0668 -1.9999 3.2611 46 1 3.8540 -2.1680 4.5531 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880087595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:18 Heat of formation + Delta-G solvation = -17.987063 kcal Electronic energy + Delta-G solvation = -24485.945103 eV Core-core repulsion = 21376.068400 eV Total energy + Delta-G solvation = -3109.876703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64466 -37.27443 -35.71826 -33.89546 -32.98778 -32.19259 -30.55092 -27.32851 -27.07378 -25.89709 -24.80376 -23.17636 -21.91307 -20.80872 -20.00808 -19.33357 -18.02051 -16.84918 -15.91244 -15.78791 -15.19659 -14.62680 -14.39499 -14.00415 -13.80969 -13.73067 -13.16871 -12.87643 -12.84724 -12.55771 -12.30489 -12.15247 -11.78923 -11.66920 -11.41561 -11.13318 -10.95127 -10.93296 -10.85051 -10.73661 -10.69252 -10.45087 -10.23219 -10.18355 -10.04803 -9.86239 -9.59141 -9.22398 -9.08522 -8.69826 -8.49713 -7.68673 -6.52315 -4.23893 2.55578 3.35681 3.35869 3.42382 3.55023 4.00625 4.40276 4.86721 4.91666 5.03840 5.18588 5.31126 5.40370 5.50598 5.53519 5.59722 5.66068 5.86025 5.89378 5.92728 5.94835 5.96981 6.02295 6.13175 6.14981 6.18625 6.29894 6.33974 6.34764 6.43284 6.49171 6.53201 6.63068 6.70051 6.74233 6.78431 6.84648 6.89116 6.90862 7.08921 7.39245 7.52154 7.86062 8.13914 8.42303 8.64267 8.99594 9.39567 10.82984 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.008373 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.158352 B = 3343.287690 C = 4177.673515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C 0.147 3.853 4 N -0.589 5.589 5 C 0.211 3.789 6 C -0.606 4.606 7 H 0.056 0.944 8 C 0.023 3.977 9 N -0.904 5.904 10 Si 1.063 2.937 11 H -0.286 1.286 12 H -0.288 1.288 13 H -0.282 1.282 14 C 0.535 3.465 15 O -0.569 6.569 16 C -0.073 4.073 17 C -0.155 4.155 18 C -0.108 4.108 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.074 4.074 22 H 0.082 0.918 23 C -0.150 4.150 24 C -0.146 4.146 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.055 0.945 32 H 0.268 0.732 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.123 0.877 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 -1.702 5.830 8.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.177 4.177 3 C 0.024 3.976 4 N -0.319 5.319 5 C 0.091 3.909 6 C -0.644 4.644 7 H 0.074 0.926 8 C -0.182 4.182 9 N -0.539 5.539 10 Si 0.891 3.109 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.207 1.207 14 C 0.324 3.676 15 O -0.449 6.449 16 C -0.076 4.076 17 C -0.211 4.211 18 C -0.146 4.146 19 C -0.160 4.160 20 C -0.153 4.153 21 C -0.092 4.092 22 H 0.100 0.900 23 C -0.188 4.188 24 C -0.203 4.203 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.653 -1.123 5.387 7.207 hybrid contribution -1.509 -0.478 0.391 1.631 sum -6.163 -1.601 5.778 8.598 Atomic orbital electron populations 1.23672 0.95826 1.01273 1.01634 1.23358 0.96140 0.99230 0.98961 1.20329 0.91787 0.94544 0.90976 1.47993 1.11733 1.64662 1.07473 1.19964 0.77052 0.96000 0.97855 1.22255 0.96956 0.98355 1.46859 0.92563 1.25713 0.95305 1.01738 0.95427 1.70840 1.39701 1.01978 1.41378 0.83601 0.76310 0.74525 0.76477 1.21217 1.21426 1.20685 1.20349 0.88671 0.75072 0.83546 1.90556 1.18909 1.52948 1.82537 1.21367 0.95876 0.96746 0.93642 1.22688 0.96667 1.01082 1.00686 1.22399 1.00986 0.98722 0.92499 1.22473 1.00437 0.95661 0.97415 1.22426 1.00923 0.96596 0.95378 1.21809 1.00446 0.92680 0.94306 0.89991 1.22345 0.99279 0.94279 1.02850 1.21731 1.01088 0.96884 1.00623 0.88790 0.89080 0.87862 0.91043 0.89590 0.96266 0.92747 0.92118 0.93012 0.94292 0.85872 0.91906 0.90167 0.92034 0.91667 0.91847 0.91970 0.92517 0.88672 0.93364 0.92575 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.31 29.01 0.42 -2.40 16 2 C -0.16 -2.66 9.81 -36.03 -0.35 -3.01 16 3 C 0.15 2.78 5.76 -5.20 -0.03 2.75 16 4 N -0.59 -12.15 1.72 -176.44 -0.30 -12.45 16 5 C 0.21 4.68 2.06 -5.20 -0.01 4.67 16 6 C -0.61 -14.82 6.10 -34.44 -0.21 -15.03 16 7 H 0.06 1.43 7.65 -52.48 -0.40 1.03 16 8 C 0.02 0.59 5.18 -17.82 -0.09 0.50 16 9 N -0.90 -24.28 13.65 55.43 0.76 -23.53 16 10 Si 1.06 23.26 29.90 -169.99 -5.08 18.18 16 11 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 C 0.53 11.14 4.67 -10.98 -0.05 11.09 16 15 O -0.57 -12.91 15.13 5.55 0.08 -12.82 16 16 C -0.07 -1.37 0.61 -154.54 -0.10 -1.46 16 17 C -0.15 -3.09 6.60 37.16 0.25 -2.84 16 18 C -0.11 -1.82 5.72 -25.03 -0.14 -1.96 16 19 C -0.12 -1.71 6.91 -24.70 -0.17 -1.89 16 20 C -0.12 -1.67 5.57 -25.07 -0.14 -1.81 16 21 C -0.07 -1.25 1.63 -89.50 -0.15 -1.40 16 22 H 0.08 1.46 7.14 -51.93 -0.37 1.09 16 23 C -0.15 -2.57 3.74 -26.73 -0.10 -2.67 16 24 C -0.15 -2.14 9.77 37.15 0.36 -1.77 16 25 H 0.09 1.39 7.87 -52.49 -0.41 0.98 16 26 H 0.09 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.07 1.37 7.34 -51.93 -0.38 0.99 16 29 H 0.09 1.62 8.04 -51.93 -0.42 1.20 16 30 H 0.02 0.46 7.99 -51.93 -0.41 0.04 16 31 H 0.06 1.21 2.89 -51.93 -0.15 1.06 16 32 H 0.27 7.11 7.22 -40.82 -0.29 6.81 16 33 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 34 H 0.04 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.12 2.76 3.34 -51.93 -0.17 2.59 16 36 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 37 H 0.08 1.46 6.78 -51.93 -0.35 1.11 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.91 7.74 -51.93 -0.40 0.51 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.03 7.63 -51.93 -0.40 0.63 16 43 H 0.10 1.81 3.54 -51.93 -0.18 1.62 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -26.93 343.24 -7.61 -34.54 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.72 Total: 8.15 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -0.52 Total: -17.24 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.45 Total: -35.98 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.08 Total: 18.18 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.93 -7.61 -34.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880087595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.550 kcal (2) G-P(sol) polarization free energy of solvation -26.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds