Wall clock time and date at job start Tue Mar 31 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00006 * 2 1 4 4 N 1.46501 * 109.47124 * 129.92019 * 3 2 1 5 5 C 1.46503 * 120.00224 * 79.23680 * 4 3 2 6 6 C 1.50700 * 109.46943 * 270.00250 * 5 4 3 7 7 H 1.07994 * 120.00007 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99604 * 179.72411 * 6 5 4 9 9 N 1.31515 * 120.00412 * 0.27812 * 8 6 5 10 10 Si 1.86803 * 119.99967 * 180.27217 * 8 6 5 11 11 H 1.48498 * 109.47107 * 89.99846 * 10 8 6 12 12 H 1.48496 * 109.47408 * 210.00114 * 10 8 6 13 13 H 1.48504 * 109.47296 * 330.00341 * 10 8 6 14 14 C 1.34778 * 120.00071 * 259.23723 * 4 3 2 15 15 O 1.21273 * 120.00146 * 173.23576 * 14 4 3 16 16 C 1.50699 * 119.99677 * 353.23643 * 14 4 3 17 17 C 1.53004 * 110.01720 * 65.29649 * 16 14 4 18 18 C 1.54269 * 110.03297 * 303.90693 * 16 14 4 19 19 C 1.54891 * 104.19241 * 264.32310 * 18 16 14 20 20 C 1.54888 * 102.75009 * 322.05949 * 19 18 16 21 21 C 1.53873 * 110.03469 * 186.73827 * 16 14 4 22 22 H 1.09005 * 110.02984 * 0.02562 * 21 16 14 23 23 C 1.52999 * 110.03244 * 238.57108 * 21 16 14 24 24 C 1.53002 * 109.47036 * 174.99923 * 23 21 16 25 25 H 1.08001 * 120.00250 * 186.27692 * 1 2 3 26 26 H 1.07993 * 119.99996 * 6.27110 * 1 2 3 27 27 H 1.08006 * 119.99559 * 180.02562 * 2 1 3 28 28 H 1.08991 * 109.47370 * 9.91423 * 3 2 1 29 29 H 1.09005 * 109.46785 * 249.91314 * 3 2 1 30 30 H 1.08992 * 109.47224 * 150.00093 * 5 4 3 31 31 H 1.09000 * 109.46958 * 30.00397 * 5 4 3 32 32 H 0.96998 * 120.00003 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.47454 * 50.95212 * 17 16 14 34 34 H 1.08998 * 109.47277 * 170.95344 * 17 16 14 35 35 H 1.09000 * 109.47186 * 290.94701 * 17 16 14 36 36 H 1.08996 * 110.48657 * 23.00176 * 18 16 14 37 37 H 1.09003 * 110.48503 * 145.64668 * 18 16 14 38 38 H 1.09000 * 110.75329 * 80.37579 * 19 18 16 39 39 H 1.09003 * 110.75844 * 203.74060 * 19 18 16 40 40 H 1.08995 * 110.48388 * 156.62143 * 20 19 18 41 41 H 1.09002 * 110.48517 * 279.12699 * 20 19 18 42 42 H 1.08999 * 109.47206 * 294.99722 * 23 21 16 43 43 H 1.09005 * 109.47361 * 54.99781 * 23 21 16 44 44 H 1.09005 * 109.46643 * 299.99693 * 24 23 21 45 45 H 1.08996 * 109.47654 * 59.99427 * 24 23 21 46 46 H 1.09002 * 109.47425 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0753 1.2848 1.0593 5 6 4.3412 0.5779 0.8497 6 6 4.1996 -0.8517 1.3049 7 1 3.2607 -1.1989 1.7102 8 6 5.2672 -1.7178 1.1992 9 7 6.4108 -1.2949 0.7062 10 14 5.0894 -3.4919 1.7564 11 1 4.6216 -4.3236 0.6185 12 1 6.4033 -3.9959 2.2306 13 1 4.1018 -3.5667 2.8629 14 6 2.8415 1.9165 2.2267 15 8 3.6223 1.7984 3.1471 16 6 1.6096 2.7694 2.3883 17 6 0.3549 1.8974 2.3104 18 6 1.5692 3.8527 1.2907 19 6 2.1918 5.1003 1.9653 20 6 1.6403 5.0184 3.4104 21 6 1.6548 3.5106 3.7360 22 1 2.5679 3.2537 4.2730 23 6 0.4302 3.1443 4.5769 24 6 0.5498 3.7884 5.9595 25 1 -0.5400 -0.9297 0.1023 26 1 -0.5400 0.9297 -0.1022 27 1 1.8500 -0.9354 -0.0004 28 1 1.3686 2.1258 0.1769 29 1 2.5508 1.4432 -0.9652 30 1 5.1290 1.0656 1.4237 31 1 4.5977 0.5983 -0.2095 32 1 7.1617 -1.9043 0.6315 33 1 0.4540 1.0559 2.9960 34 1 -0.5172 2.4901 2.5865 35 1 0.2337 1.5250 1.2932 36 1 2.1650 3.5468 0.4307 37 1 0.5407 4.0542 0.9912 38 1 3.2800 5.0381 1.9630 39 1 1.8550 6.0134 1.4745 40 1 2.2879 5.5633 4.0972 41 1 0.6242 5.4104 3.4537 42 1 -0.4712 3.5076 4.0836 43 1 0.3741 2.0610 4.6844 44 1 1.4513 3.4250 6.4529 45 1 0.6060 4.8716 5.8522 46 1 -0.3224 3.5271 6.5589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880087597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:22 Heat of formation + Delta-G solvation = -16.500063 kcal Electronic energy + Delta-G solvation = -23805.778103 eV Core-core repulsion = 20695.965881 eV Total energy + Delta-G solvation = -3109.812222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.56251 -37.40284 -35.85685 -33.26341 -33.06979 -32.03074 -31.23534 -27.84466 -27.17086 -25.55335 -25.04125 -23.49939 -22.34546 -21.14511 -19.61057 -19.16367 -17.90204 -16.49973 -16.15275 -15.60876 -15.12301 -14.79957 -14.62448 -14.42967 -13.85714 -13.59831 -13.44950 -13.16780 -12.88380 -12.77362 -12.35513 -12.18285 -11.95152 -11.88158 -11.41194 -11.28024 -11.14576 -10.94220 -10.86805 -10.82630 -10.62914 -10.54034 -10.41647 -10.28786 -10.22472 -10.03535 -9.99966 -9.56905 -8.88398 -8.65509 -8.40769 -7.64201 -6.01757 -4.05107 2.57294 3.30438 3.37615 3.41707 3.52060 4.02809 4.46454 4.63474 4.72047 4.87771 5.20528 5.23999 5.28384 5.32669 5.35326 5.41893 5.46565 5.52135 5.62410 5.69913 5.74126 5.76628 5.80469 5.90113 5.94532 5.97826 5.99549 6.07320 6.08755 6.18981 6.24914 6.29971 6.33967 6.41117 6.48681 6.57069 6.75803 7.03491 7.04581 7.14599 7.45765 7.59946 7.95139 8.27338 8.48403 8.94596 9.16466 9.59447 11.06479 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.005687 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.088248 B = 4922.090653 C = 5185.798580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C 0.120 3.880 4 N -0.593 5.593 5 C 0.246 3.754 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.520 3.480 15 O -0.536 6.536 16 C -0.080 4.080 17 C -0.165 4.165 18 C -0.121 4.121 19 C -0.125 4.125 20 C -0.115 4.115 21 C -0.083 4.083 22 H 0.097 0.903 23 C -0.114 4.114 24 C -0.152 4.152 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.157 11.104 0.551 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.161 4.161 3 C -0.004 4.004 4 N -0.324 5.324 5 C 0.127 3.873 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.306 3.694 15 O -0.413 6.413 16 C -0.084 4.084 17 C -0.221 4.221 18 C -0.159 4.159 19 C -0.163 4.163 20 C -0.152 4.152 21 C -0.101 4.101 22 H 0.115 0.885 23 C -0.152 4.152 24 C -0.209 4.209 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.143 0.857 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.505 10.972 0.997 17.429 hybrid contribution 0.017 -1.266 0.229 1.286 sum -13.488 9.706 1.226 16.662 Atomic orbital electron populations 1.23655 0.95820 1.01214 1.04550 1.23698 0.95806 1.00704 0.95901 1.21016 0.91579 0.95549 0.92222 1.48088 1.18598 1.52021 1.13662 1.19270 0.79583 0.91501 0.96912 1.21437 0.98084 0.94843 1.41336 0.92343 1.24928 0.95097 0.98807 0.95321 1.69928 1.02251 1.35623 1.45739 0.86560 0.77539 0.84798 0.78926 1.20701 1.21132 1.19945 1.20180 0.86666 0.80119 0.82425 1.90624 1.48337 1.63510 1.38817 1.21368 0.94938 0.95468 0.96612 1.22618 0.95582 0.99441 1.04471 1.22688 1.01255 0.94406 0.97502 1.22493 1.00688 0.97320 0.95779 1.22411 1.00440 0.96046 0.96334 1.21836 1.00225 0.93724 0.94347 0.88503 1.21722 0.97467 1.00864 0.95108 1.21804 1.01411 1.00588 0.97136 0.88749 0.88805 0.85696 0.89049 0.90648 0.94127 0.95129 0.92814 0.92269 0.91908 0.89748 0.90469 0.90930 0.91388 0.91716 0.91963 0.91879 0.92150 0.91697 0.92688 0.92941 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.83 12.51 29.01 0.36 -2.46 16 2 C -0.14 -2.32 8.97 -36.03 -0.32 -2.64 16 3 C 0.12 1.96 4.38 -5.20 -0.02 1.94 16 4 N -0.59 -12.49 2.38 -176.44 -0.42 -12.91 16 5 C 0.25 6.42 5.12 -5.19 -0.03 6.39 16 6 C -0.52 -14.57 8.40 -34.44 -0.29 -14.86 16 7 H 0.06 1.65 7.30 -52.49 -0.38 1.27 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 10 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.52 10.90 6.43 -10.99 -0.07 10.83 16 15 O -0.54 -13.70 14.89 5.56 0.08 -13.62 16 16 C -0.08 -1.24 0.61 -154.54 -0.09 -1.33 16 17 C -0.16 -2.25 6.65 37.16 0.25 -2.01 16 18 C -0.12 -1.54 4.42 -25.07 -0.11 -1.65 16 19 C -0.13 -1.53 6.91 -24.74 -0.17 -1.70 16 20 C -0.11 -1.37 5.53 -25.08 -0.14 -1.51 16 21 C -0.08 -1.20 2.52 -89.51 -0.23 -1.43 16 22 H 0.10 1.75 6.42 -51.93 -0.33 1.41 16 23 C -0.11 -1.42 4.05 -26.73 -0.11 -1.53 16 24 C -0.15 -1.69 9.77 37.16 0.36 -1.33 16 25 H 0.09 1.17 8.06 -52.49 -0.42 0.74 16 26 H 0.09 1.03 6.89 -52.49 -0.36 0.67 16 27 H 0.13 2.41 6.93 -52.48 -0.36 2.05 16 28 H 0.09 1.24 2.90 -51.93 -0.15 1.09 16 29 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 30 H 0.04 1.20 7.52 -51.93 -0.39 0.81 16 31 H 0.03 0.81 8.01 -51.93 -0.42 0.39 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.06 0.92 7.25 -51.93 -0.38 0.54 16 34 H 0.06 0.71 6.21 -51.93 -0.32 0.38 16 35 H 0.08 1.10 1.47 -51.93 -0.08 1.02 16 36 H 0.08 1.03 5.70 -51.93 -0.30 0.74 16 37 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.65 7.77 -51.93 -0.40 0.25 16 42 H 0.06 0.66 6.71 -51.93 -0.35 0.31 16 43 H 0.06 0.89 6.73 -51.93 -0.35 0.54 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.53 7.51 -51.93 -0.39 0.14 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -31.76 341.44 -7.64 -39.40 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.46 Total: 2.58 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.71 Total: -11.66 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.32 Total: -38.87 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.62 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.76 -7.64 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880087597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.905 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds