Wall clock time and date at job start Tue Mar 31 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00337 * 2 1 4 4 N 1.46499 * 109.47231 * 125.34415 * 3 2 1 5 5 C 1.46500 * 120.00092 * 265.05776 * 4 3 2 6 6 C 1.50698 * 109.47415 * 276.76236 * 5 4 3 7 7 H 1.08006 * 120.00128 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00152 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00057 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00052 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47041 * 60.00476 * 10 8 6 12 12 H 1.48507 * 109.47227 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47467 * 300.00516 * 10 8 6 14 14 C 1.34772 * 119.99785 * 85.06225 * 4 3 2 15 15 O 1.21279 * 120.00300 * 5.52791 * 14 4 3 16 16 C 1.50702 * 119.99930 * 185.52411 * 14 4 3 17 17 C 1.53000 * 110.01569 * 296.84866 * 16 14 4 18 18 C 1.54265 * 110.07414 * 58.27099 * 16 14 4 19 19 C 1.54887 * 104.19532 * 95.69541 * 18 16 14 20 20 C 1.54894 * 102.74966 * 37.94323 * 19 18 16 21 21 C 1.53875 * 110.03154 * 175.46439 * 16 14 4 22 22 H 1.08996 * 110.03336 * 359.94687 * 21 16 14 23 23 C 1.52997 * 110.03561 * 121.33267 * 21 16 14 24 24 C 1.53000 * 109.47365 * 184.99766 * 23 21 16 25 25 H 1.08006 * 119.99527 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00579 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99856 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47051 * 5.34447 * 3 2 1 29 29 H 1.09000 * 109.47011 * 245.34974 * 3 2 1 30 30 H 1.09000 * 109.46835 * 36.76408 * 5 4 3 31 31 H 1.08999 * 109.46829 * 156.76390 * 5 4 3 32 32 H 0.97002 * 120.00607 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.47593 * 298.98597 * 17 16 14 34 34 H 1.09005 * 109.47194 * 58.98925 * 17 16 14 35 35 H 1.08996 * 109.47055 * 178.98520 * 17 16 14 36 36 H 1.09001 * 110.48618 * 214.37931 * 18 16 14 37 37 H 1.09005 * 110.48243 * 337.01954 * 18 16 14 38 38 H 1.08994 * 110.75773 * 279.62891 * 19 18 16 39 39 H 1.09000 * 110.91112 * 156.33128 * 19 18 16 40 40 H 1.08997 * 110.48571 * 203.37307 * 20 19 18 41 41 H 1.09000 * 110.48310 * 80.73523 * 20 19 18 42 42 H 1.08998 * 109.47418 * 304.99915 * 23 21 16 43 43 H 1.09006 * 109.46895 * 64.99864 * 23 21 16 44 44 H 1.09009 * 109.46943 * 299.99941 * 24 23 21 45 45 H 1.08998 * 109.46918 * 59.99863 * 24 23 21 46 46 H 1.09000 * 109.47127 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9997 1.3284 1.1266 5 6 2.6082 1.9555 2.3915 6 6 2.8385 3.4424 2.3075 7 1 3.2363 3.8770 1.4023 8 6 2.5404 4.2481 3.3859 9 7 2.0555 3.7191 4.4879 10 14 2.8265 6.0911 3.2820 11 1 2.0130 6.6568 2.1758 12 1 2.4295 6.7267 4.5641 13 1 4.2648 6.3550 3.0237 14 6 4.2211 0.7731 0.9994 15 8 4.5832 0.3438 -0.0755 16 6 5.1371 0.6858 2.1930 17 6 5.4951 2.0905 2.6823 18 6 4.4568 -0.1109 3.3253 19 6 4.9926 -1.5535 3.1498 20 6 6.4683 -1.3224 2.7396 21 6 6.4160 -0.0845 1.8205 22 1 6.3738 -0.3959 0.7769 23 6 7.6452 0.7959 2.0551 24 6 8.8969 0.0652 1.5650 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3591 2.1314 0.0957 29 1 2.6164 1.4053 -0.9340 30 1 1.5526 1.7614 2.5817 31 1 3.2059 1.5405 3.2030 32 1 1.8461 4.2858 5.2467 33 1 6.0138 2.6301 1.8900 34 1 4.5838 2.6254 2.9497 35 1 6.1428 2.0168 3.5558 36 1 4.7447 0.2873 4.2982 37 1 3.3732 -0.0897 3.2089 38 1 4.4495 -2.0741 2.3611 39 1 4.9343 -2.1069 4.0870 40 1 6.8527 -2.1854 2.1959 41 1 7.0811 -1.1199 3.6179 42 1 7.5323 1.7311 1.5067 43 1 7.7420 1.0084 3.1198 44 1 9.0099 -0.8700 2.1135 45 1 8.8001 -0.1473 0.5003 46 1 9.7726 0.6923 1.7325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880087599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:26 Heat of formation + Delta-G solvation = -27.457869 kcal Electronic energy + Delta-G solvation = -23892.307169 eV Core-core repulsion = 20782.019780 eV Total energy + Delta-G solvation = -3110.287388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31732 -37.42980 -35.45845 -33.75153 -32.83039 -32.12773 -30.79698 -27.62962 -27.19912 -25.78914 -24.39693 -23.25117 -22.46842 -20.72913 -19.97010 -18.90410 -17.53770 -16.67972 -15.87038 -15.59237 -15.01507 -14.88542 -14.49579 -14.22071 -14.05486 -13.55896 -13.15331 -12.91160 -12.78240 -12.57755 -12.32022 -12.11532 -11.70078 -11.62741 -11.51568 -11.07285 -11.02583 -10.92952 -10.87409 -10.65043 -10.56855 -10.37993 -10.24354 -10.19880 -9.95020 -9.89821 -9.73232 -9.52145 -9.13003 -8.70954 -8.50691 -7.69801 -6.21392 -4.26244 2.58701 3.22266 3.27592 3.29974 3.49078 4.07726 4.31671 4.91859 4.98546 5.07284 5.11824 5.34856 5.45570 5.49624 5.55275 5.59809 5.61624 5.82628 5.92520 5.97744 5.99899 6.04632 6.06836 6.17618 6.18429 6.20877 6.29175 6.35638 6.38406 6.45588 6.50113 6.55387 6.61321 6.72426 6.77429 6.86958 6.94450 6.96477 7.08186 7.20071 7.52437 7.59498 7.74067 8.04554 8.40813 8.77568 9.07577 9.38182 10.84196 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.007642 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.144848 B = 3663.250630 C = 4899.602692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.143 3.857 4 N -0.590 5.590 5 C 0.219 3.781 6 C -0.533 4.533 7 H 0.061 0.939 8 C 0.067 3.933 9 N -0.887 5.887 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.528 3.472 15 O -0.574 6.574 16 C -0.067 4.067 17 C -0.174 4.174 18 C -0.114 4.114 19 C -0.127 4.127 20 C -0.114 4.114 21 C -0.083 4.083 22 H 0.091 0.909 23 C -0.116 4.116 24 C -0.151 4.151 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.266 0.734 33 H 0.047 0.953 34 H 0.129 0.871 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -7.236 -1.835 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.319 5.319 5 C 0.100 3.900 6 C -0.572 4.572 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.525 5.525 10 Si 0.720 3.280 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.317 3.683 15 O -0.455 6.455 16 C -0.070 4.070 17 C -0.230 4.230 18 C -0.151 4.151 19 C -0.164 4.164 20 C -0.152 4.152 21 C -0.102 4.102 22 H 0.109 0.891 23 C -0.153 4.153 24 C -0.208 4.208 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.147 0.853 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.927 -7.377 -2.182 9.136 hybrid contribution 0.011 1.092 0.069 1.094 sum 4.938 -6.286 -2.113 8.268 Atomic orbital electron populations 1.23753 0.95772 1.01477 1.02238 1.23398 0.96044 0.99380 0.98404 1.20384 0.92188 0.94626 0.90815 1.48115 1.13084 1.55428 1.15322 1.19936 0.97046 0.92587 0.80463 1.21397 1.43560 0.92045 1.00193 0.92075 1.24917 0.94747 0.98838 0.95188 1.69905 1.42828 1.35981 1.03751 0.86630 0.78974 0.84980 0.77409 1.20148 1.21120 1.19957 1.20431 0.81944 0.76456 0.89494 1.90529 1.75224 1.50842 1.28948 1.21169 0.94139 0.98033 0.93675 1.22686 1.06242 0.94281 0.99775 1.22632 1.00786 0.93775 0.97931 1.22523 0.96144 0.97188 1.00593 1.22409 0.96511 0.97418 0.98848 1.21843 0.92748 0.94280 1.01296 0.89054 1.21727 0.93637 0.98828 1.01103 1.21806 0.97670 1.00226 1.01095 0.88468 0.88993 0.87973 0.89777 0.90524 0.95223 0.91703 0.92384 0.93440 0.85335 0.93160 0.90591 0.90256 0.92034 0.91884 0.92348 0.91866 0.91602 0.91967 0.93048 0.93006 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 14.32 29.01 0.42 -2.46 16 2 C -0.15 -2.59 9.81 -36.03 -0.35 -2.94 16 3 C 0.14 2.73 5.86 -5.19 -0.03 2.70 16 4 N -0.59 -12.44 2.37 -176.43 -0.42 -12.85 16 5 C 0.22 5.03 3.80 -5.19 -0.02 5.01 16 6 C -0.53 -13.29 6.91 -34.44 -0.24 -13.53 16 7 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 8 C 0.07 1.69 5.42 -17.82 -0.10 1.60 16 9 N -0.89 -23.42 13.29 55.43 0.74 -22.69 16 10 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 C 0.53 11.11 6.41 -10.99 -0.07 11.04 16 15 O -0.57 -13.10 14.85 5.56 0.08 -13.02 16 16 C -0.07 -1.24 0.61 -154.54 -0.09 -1.33 16 17 C -0.17 -3.35 6.78 37.16 0.25 -3.10 16 18 C -0.11 -1.96 4.44 -25.07 -0.11 -2.07 16 19 C -0.13 -1.87 6.91 -24.74 -0.17 -2.04 16 20 C -0.11 -1.60 5.54 -25.07 -0.14 -1.74 16 21 C -0.08 -1.36 2.52 -89.50 -0.23 -1.58 16 22 H 0.09 1.69 6.40 -51.93 -0.33 1.35 16 23 C -0.12 -1.69 4.11 -26.73 -0.11 -1.80 16 24 C -0.15 -1.87 9.77 37.16 0.36 -1.51 16 25 H 0.10 1.39 7.84 -52.48 -0.41 0.98 16 26 H 0.09 1.18 8.06 -52.49 -0.42 0.75 16 27 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.08 1.59 7.69 -51.93 -0.40 1.19 16 29 H 0.08 1.49 7.50 -51.93 -0.39 1.10 16 30 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.07 1.49 3.34 -51.93 -0.17 1.32 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.05 0.92 6.64 -51.93 -0.34 0.57 16 34 H 0.13 2.88 3.09 -51.93 -0.16 2.72 16 35 H 0.05 0.87 6.84 -51.93 -0.36 0.52 16 36 H 0.08 1.28 7.84 -51.93 -0.41 0.87 16 37 H 0.08 1.49 5.81 -51.93 -0.30 1.18 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.82 7.76 -51.93 -0.40 0.41 16 42 H 0.07 1.04 6.44 -51.93 -0.33 0.71 16 43 H 0.06 0.88 6.90 -51.93 -0.36 0.52 16 44 H 0.05 0.59 7.51 -51.92 -0.39 0.20 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -26.67 347.22 -7.70 -34.38 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.69 Total: 7.68 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.63 Total: -13.75 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.32 Total: -35.54 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.67 -7.70 -34.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880087599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.920 kcal (2) G-P(sol) polarization free energy of solvation -26.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds