Wall clock time and date at job start Tue Mar 31 2020 02:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00337 * 2 1 4 4 N 1.46499 * 109.47231 * 125.34415 * 3 2 1 5 5 C 1.46500 * 120.00092 * 265.05776 * 4 3 2 6 6 C 1.50698 * 109.47415 * 276.76236 * 5 4 3 7 7 H 1.08006 * 120.00128 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00152 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00057 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00052 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47041 * 60.00476 * 10 8 6 12 12 H 1.48507 * 109.47227 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47467 * 300.00516 * 10 8 6 14 14 C 1.34772 * 119.99785 * 85.06225 * 4 3 2 15 15 O 1.21279 * 120.00300 * 5.52791 * 14 4 3 16 16 C 1.50702 * 119.99930 * 185.52411 * 14 4 3 17 17 C 1.53000 * 110.01569 * 296.84866 * 16 14 4 18 18 C 1.54265 * 110.07414 * 58.27099 * 16 14 4 19 19 C 1.54887 * 104.19532 * 95.69541 * 18 16 14 20 20 C 1.54894 * 102.74966 * 37.94323 * 19 18 16 21 21 C 1.53875 * 110.03154 * 175.46439 * 16 14 4 22 22 H 1.08996 * 110.03336 * 359.94687 * 21 16 14 23 23 C 1.52997 * 110.03561 * 121.33267 * 21 16 14 24 24 C 1.53000 * 109.47365 * 184.99766 * 23 21 16 25 25 H 1.08006 * 119.99527 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00579 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99856 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47051 * 5.34447 * 3 2 1 29 29 H 1.09000 * 109.47011 * 245.34974 * 3 2 1 30 30 H 1.09000 * 109.46835 * 36.76408 * 5 4 3 31 31 H 1.08999 * 109.46829 * 156.76390 * 5 4 3 32 32 H 0.97002 * 120.00607 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.47593 * 298.98597 * 17 16 14 34 34 H 1.09005 * 109.47194 * 58.98925 * 17 16 14 35 35 H 1.08996 * 109.47055 * 178.98520 * 17 16 14 36 36 H 1.09001 * 110.48618 * 214.37931 * 18 16 14 37 37 H 1.09005 * 110.48243 * 337.01954 * 18 16 14 38 38 H 1.08994 * 110.75773 * 279.62891 * 19 18 16 39 39 H 1.09000 * 110.91112 * 156.33128 * 19 18 16 40 40 H 1.08997 * 110.48571 * 203.37307 * 20 19 18 41 41 H 1.09000 * 110.48310 * 80.73523 * 20 19 18 42 42 H 1.08998 * 109.47418 * 304.99915 * 23 21 16 43 43 H 1.09006 * 109.46895 * 64.99864 * 23 21 16 44 44 H 1.09009 * 109.46943 * 299.99941 * 24 23 21 45 45 H 1.08998 * 109.46918 * 59.99863 * 24 23 21 46 46 H 1.09000 * 109.47127 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9997 1.3284 1.1266 5 6 2.6082 1.9555 2.3915 6 6 2.8385 3.4424 2.3075 7 1 3.2363 3.8770 1.4023 8 6 2.5404 4.2481 3.3859 9 7 2.0555 3.7191 4.4879 10 14 2.8265 6.0911 3.2820 11 1 2.0130 6.6568 2.1758 12 1 2.4295 6.7267 4.5641 13 1 4.2648 6.3550 3.0237 14 6 4.2211 0.7731 0.9994 15 8 4.5832 0.3438 -0.0755 16 6 5.1371 0.6858 2.1930 17 6 5.4951 2.0905 2.6823 18 6 4.4568 -0.1109 3.3253 19 6 4.9926 -1.5535 3.1498 20 6 6.4683 -1.3224 2.7396 21 6 6.4160 -0.0845 1.8205 22 1 6.3738 -0.3959 0.7769 23 6 7.6452 0.7959 2.0551 24 6 8.8969 0.0652 1.5650 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3591 2.1314 0.0957 29 1 2.6164 1.4053 -0.9340 30 1 1.5526 1.7614 2.5817 31 1 3.2059 1.5405 3.2030 32 1 1.8461 4.2858 5.2467 33 1 6.0138 2.6301 1.8900 34 1 4.5838 2.6254 2.9497 35 1 6.1428 2.0168 3.5558 36 1 4.7447 0.2873 4.2982 37 1 3.3732 -0.0897 3.2089 38 1 4.4495 -2.0741 2.3611 39 1 4.9343 -2.1069 4.0870 40 1 6.8527 -2.1854 2.1959 41 1 7.0811 -1.1199 3.6179 42 1 7.5323 1.7311 1.5067 43 1 7.7420 1.0084 3.1198 44 1 9.0099 -0.8700 2.1135 45 1 8.8001 -0.1473 0.5003 46 1 9.7726 0.6923 1.7325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880087599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:25 Heat of formation + Delta-G solvation = -39.310314 kcal Electronic energy + Delta-G solvation = -23892.821129 eV Core-core repulsion = 20782.019780 eV Total energy + Delta-G solvation = -3110.801349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85271 -38.88598 -37.17223 -35.31403 -34.24638 -33.68445 -32.18871 -29.40560 -28.48928 -27.32599 -25.83222 -25.04307 -23.74855 -22.08965 -21.33509 -20.29649 -19.07971 -18.53741 -17.54406 -17.23847 -16.45305 -16.36313 -16.15292 -15.51813 -15.40791 -14.96885 -14.56009 -14.43527 -14.21319 -14.03994 -13.91520 -13.66801 -13.15028 -13.07849 -12.94086 -12.74835 -12.62948 -12.35686 -12.26069 -12.16975 -11.96573 -11.82805 -11.73806 -11.56204 -11.42316 -11.26641 -11.20872 -11.04411 -10.61030 -10.52533 -10.17413 -9.44862 -8.17506 -6.27633 1.26954 1.42279 1.44161 1.50621 1.81378 2.38167 2.54010 3.11515 3.59829 3.67504 3.72791 4.02937 4.14359 4.21980 4.26484 4.35860 4.47111 4.52090 4.53885 4.65735 4.73900 4.78735 4.80627 4.84403 4.95273 4.97703 5.00682 5.03646 5.06130 5.12232 5.20360 5.22805 5.25538 5.31692 5.34514 5.44169 5.54856 5.64454 5.64596 5.68134 5.75465 5.85240 5.96005 6.11575 6.62193 6.85147 7.32710 7.44638 8.87150 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.007642 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.144848 B = 3663.250630 C = 4899.602692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C 0.141 3.859 4 N -0.594 5.594 5 C 0.236 3.764 6 C -0.536 4.536 7 H 0.047 0.953 8 C 0.030 3.970 9 N -0.911 5.911 10 Si 0.945 3.055 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.272 1.272 14 C 0.521 3.479 15 O -0.597 6.597 16 C -0.069 4.069 17 C -0.166 4.166 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.106 4.106 21 C -0.081 4.081 22 H 0.067 0.933 23 C -0.114 4.114 24 C -0.146 4.146 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.008 0.992 31 H 0.068 0.932 32 H 0.268 0.732 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -7.992 -1.040 9.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.018 3.982 4 N -0.323 5.323 5 C 0.115 3.885 6 C -0.575 4.575 7 H 0.065 0.935 8 C -0.171 4.171 9 N -0.550 5.550 10 Si 0.771 3.229 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.197 1.197 14 C 0.311 3.689 15 O -0.480 6.480 16 C -0.072 4.072 17 C -0.222 4.222 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.144 4.144 21 C -0.100 4.100 22 H 0.085 0.915 23 C -0.151 4.151 24 C -0.203 4.203 25 H 0.121 0.879 26 H 0.138 0.862 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.669 -8.134 -1.398 10.013 hybrid contribution -0.297 1.332 -0.234 1.385 sum 5.372 -6.802 -1.633 8.820 Atomic orbital electron populations 1.24012 0.94895 1.03050 0.98379 1.23161 0.96756 0.97860 1.01934 1.20444 0.91957 0.96037 0.89776 1.48163 1.13697 1.55210 1.15192 1.19642 0.95605 0.91810 0.81409 1.21470 1.43264 0.93086 0.99652 0.93452 1.25476 0.94582 1.02142 0.94884 1.69978 1.43653 1.37159 1.04220 0.85809 0.78801 0.80923 0.77405 1.20141 1.20553 1.19725 1.20954 0.82044 0.75846 0.90092 1.90507 1.75611 1.51809 1.30032 1.21265 0.94841 0.98091 0.93009 1.22543 1.04956 0.94453 1.00265 1.22587 0.99437 0.95560 0.97485 1.22502 0.96323 0.95412 1.01597 1.22397 0.96268 0.96605 0.99102 1.21813 0.92251 0.95427 1.00479 0.91479 1.21695 0.93975 0.97977 1.01487 1.21760 0.96867 1.00899 1.00751 0.87903 0.86230 0.88483 0.90146 0.91509 0.97366 0.91447 0.92252 0.94248 0.88226 0.91171 0.90088 0.92377 0.92997 0.89343 0.90818 0.89908 0.93480 0.90997 0.91524 0.93719 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.66 14.32 67.78 0.97 -3.69 16 2 C -0.18 -6.06 9.81 25.65 0.25 -5.81 16 3 C 0.14 5.55 5.86 85.63 0.50 6.05 16 4 N -0.59 -25.87 2.37 -830.51 -1.97 -27.84 16 5 C 0.24 11.13 3.80 85.63 0.33 11.45 16 6 C -0.54 -27.28 6.91 25.60 0.18 -27.11 16 7 H 0.05 2.50 7.81 -2.91 -0.02 2.47 16 8 C 0.03 1.55 5.42 84.65 0.46 2.01 16 9 N -0.91 -48.35 13.29 21.45 0.28 -48.06 16 10 Si 0.94 41.07 29.54 68.60 2.03 43.09 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.52 22.51 6.41 87.66 0.56 23.08 16 15 O -0.60 -28.06 14.85 -3.03 -0.04 -28.10 16 16 C -0.07 -2.55 0.61 -52.20 -0.03 -2.58 16 17 C -0.17 -6.42 6.78 71.98 0.49 -5.93 16 18 C -0.11 -3.82 4.44 31.67 0.14 -3.68 16 19 C -0.12 -3.32 6.91 31.89 0.22 -3.10 16 20 C -0.11 -2.70 5.54 31.67 0.18 -2.52 16 21 C -0.08 -2.57 2.52 -10.07 -0.03 -2.59 16 22 H 0.07 2.48 6.40 -2.39 -0.02 2.46 16 23 C -0.11 -3.17 4.11 30.59 0.13 -3.05 16 24 C -0.15 -3.28 9.77 71.98 0.70 -2.58 16 25 H 0.10 2.79 7.84 -2.91 -0.02 2.77 16 26 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.10 3.40 8.06 -2.91 -0.02 3.37 16 28 H 0.08 3.15 7.69 -2.38 -0.02 3.13 16 29 H 0.07 2.71 7.50 -2.39 -0.02 2.69 16 30 H 0.01 0.42 8.12 -2.39 -0.02 0.40 16 31 H 0.07 3.17 3.34 -2.39 -0.01 3.17 16 32 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 33 H 0.04 1.54 6.64 -2.39 -0.02 1.53 16 34 H 0.10 4.53 3.09 -2.38 -0.01 4.52 16 35 H 0.07 2.38 6.84 -2.39 -0.02 2.36 16 36 H 0.08 2.64 7.84 -2.39 -0.02 2.62 16 37 H 0.06 2.20 5.81 -2.38 -0.01 2.19 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.81 7.76 -2.39 -0.02 1.79 16 42 H 0.05 1.47 6.44 -2.39 -0.02 1.46 16 43 H 0.07 1.85 6.90 -2.38 -0.02 1.84 16 44 H 0.07 1.30 7.51 -2.38 -0.02 1.29 16 45 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -57.64 347.22 6.28 -51.36 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.94 Total: 29.61 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 5.04 Total: -20.05 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.68 Total: -75.91 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.04 Total: -28.10 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -57.64 6.28 -51.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880087599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.048 kcal (2) G-P(sol) polarization free energy of solvation -57.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds