Wall clock time and date at job start Tue Mar 31 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00288 * 2 1 4 4 C 1.52998 * 109.46912 * 125.00107 * 3 2 1 5 5 C 1.53004 * 109.47112 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47062 * 55.00404 * 5 4 3 7 7 N 1.46901 * 109.47152 * 295.00126 * 5 4 3 8 8 C 1.46901 * 111.00061 * 151.49222 * 7 5 4 9 9 C 1.53003 * 109.46886 * 174.78391 * 8 7 5 10 10 C 1.50692 * 115.55042 * 39.75616 * 9 8 7 11 11 H 1.07998 * 120.00082 * 264.88113 * 10 9 8 12 12 C 1.37875 * 119.99916 * 84.88481 * 10 9 8 13 13 N 1.31513 * 120.00204 * 353.36487 * 12 10 9 14 14 Si 1.86797 * 120.00106 * 173.36507 * 12 10 9 15 15 H 1.48503 * 109.47080 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47230 * 119.99785 * 14 12 10 17 17 H 1.48497 * 109.47532 * 240.00066 * 14 12 10 18 18 C 1.53001 * 117.49557 * 254.04531 * 9 8 7 19 19 C 1.53002 * 60.00185 * 252.51650 * 18 9 8 20 20 C 1.52998 * 109.47236 * 175.00168 * 5 4 3 21 21 H 1.08998 * 110.33494 * 187.63610 * 20 5 4 22 22 C 1.54485 * 110.37423 * 65.38106 * 20 5 4 23 23 C 1.54514 * 104.06380 * 217.19355 * 22 20 5 24 24 C 1.54483 * 104.06173 * 359.97438 * 23 22 20 25 25 O 1.44434 * 110.37108 * 309.88188 * 20 5 4 26 26 H 1.08005 * 120.00185 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00263 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99782 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46808 * 5.00586 * 3 2 1 30 30 H 1.08996 * 109.47438 * 245.00418 * 3 2 1 31 31 H 1.09005 * 109.46992 * 60.00592 * 4 3 2 32 32 H 1.08996 * 109.47323 * 300.00381 * 4 3 2 33 33 H 1.00902 * 111.00066 * 27.54053 * 7 5 4 34 34 H 1.09002 * 109.46828 * 54.78325 * 8 7 5 35 35 H 1.09002 * 109.46908 * 294.78737 * 8 7 5 36 36 H 0.97004 * 120.00330 * 185.02204 * 13 12 10 37 37 H 1.09000 * 117.49865 * 0.02562 * 18 9 8 38 38 H 1.08998 * 117.49911 * 145.02479 * 18 9 8 39 39 H 1.08996 * 117.49635 * 252.51578 * 19 18 9 40 40 H 1.09001 * 117.51836 * 107.48456 * 19 18 9 41 41 H 1.09001 * 110.50771 * 335.83598 * 22 20 5 42 42 H 1.09000 * 110.51109 * 98.40776 * 22 20 5 43 43 H 1.08996 * 110.51175 * 118.64429 * 23 22 20 44 44 H 1.09000 * 110.50860 * 241.21713 * 23 22 20 45 45 H 1.08997 * 110.36849 * 142.81419 * 24 23 22 46 46 H 1.09001 * 110.36920 * 265.15147 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6582 1.1820 6 1 3.0912 3.4864 1.1824 7 7 4.6442 2.7366 -0.0174 8 6 4.8497 4.1326 -0.4262 9 6 5.8355 4.1817 -1.5954 10 6 5.6757 3.0943 -2.6263 11 1 6.2743 2.1977 -2.5626 12 6 4.7654 3.2441 -3.6509 13 7 3.9456 4.2725 -3.6571 14 14 4.6963 1.9864 -5.0303 15 1 5.7152 0.9328 -4.7910 16 1 3.3463 1.3688 -5.0700 17 1 4.9721 2.6571 -6.3261 18 6 7.2536 4.6763 -1.3034 19 6 6.2809 5.5608 -2.0861 20 6 4.6794 2.7391 2.4312 21 1 5.1263 3.7296 2.5163 22 6 5.7790 1.6549 2.3859 23 6 5.9106 1.1919 3.8541 24 6 4.8754 2.0516 4.6130 25 8 3.9053 2.4338 3.6118 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4026 -0.9314 31 1 3.7400 0.5064 1.0919 32 1 2.4773 1.2354 2.1130 33 1 4.2524 2.1929 -0.7717 34 1 5.2519 4.7012 0.4123 35 1 3.8978 4.5646 -0.7350 36 1 3.2572 4.3399 -4.3371 37 1 7.4844 4.9663 -0.2783 38 1 8.0714 4.2151 -1.8570 39 1 6.4589 5.6813 -3.1547 40 1 5.8715 6.4329 -1.5764 41 1 5.4710 0.8250 1.7498 42 1 6.7185 2.0786 2.0311 43 1 5.6677 0.1332 3.9439 44 1 6.9166 1.3850 4.2267 45 1 4.3989 1.4657 5.3989 46 1 5.3527 2.9363 5.0343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883220608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:20 Heat of formation + Delta-G solvation = -27.740556 kcal Electronic energy + Delta-G solvation = -23028.141500 eV Core-core repulsion = 19917.841854 eV Total energy + Delta-G solvation = -3110.299646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66327 -38.77647 -37.45105 -35.31904 -33.93605 -32.78884 -31.79799 -29.96351 -27.62383 -26.61037 -25.03612 -23.85629 -22.84718 -22.32821 -20.95961 -20.70434 -20.37314 -17.92163 -17.23720 -16.96909 -16.61513 -16.53836 -16.36277 -15.75445 -15.52849 -15.21130 -14.66372 -14.62413 -14.35930 -14.16683 -13.56431 -13.44315 -13.19612 -12.88943 -12.82625 -12.66043 -12.50925 -12.45740 -12.26280 -12.09298 -11.98503 -11.88004 -11.78663 -11.53639 -11.20940 -11.16190 -10.74161 -10.58704 -10.37873 -10.17958 -9.89494 -9.01073 -8.04441 -6.13206 1.40264 1.42093 1.45660 1.54584 2.45549 2.86725 3.24391 3.50453 3.70574 3.78186 3.86366 4.00382 4.08152 4.16749 4.26251 4.28018 4.39702 4.47098 4.49343 4.59219 4.62832 4.72215 4.78797 4.83217 4.87328 4.92080 4.96475 5.01191 5.02726 5.06062 5.10733 5.17311 5.23714 5.27318 5.29844 5.35701 5.49672 5.64718 5.67396 5.74430 5.83826 5.92078 6.00723 6.41682 6.58504 6.76822 6.94834 7.53467 9.03035 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012734 B = 0.006516 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.302608 B = 4296.407635 C = 5808.113072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.099 4.099 4 C -0.095 4.095 5 C 0.092 3.908 6 H 0.023 0.977 7 N -0.659 5.659 8 C 0.123 3.877 9 C 0.028 3.972 10 C -0.485 4.485 11 H 0.053 0.947 12 C 0.030 3.970 13 N -0.908 5.908 14 Si 0.938 3.062 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.289 1.289 18 C -0.183 4.183 19 C -0.171 4.171 20 C 0.092 3.908 21 H 0.051 0.949 22 C -0.127 4.127 23 C -0.151 4.151 24 C 0.040 3.960 25 O -0.393 6.393 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.349 0.651 34 H 0.046 0.954 35 H -0.003 1.003 36 H 0.256 0.744 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -7.088 13.674 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.172 4.172 3 C -0.136 4.136 4 C -0.132 4.132 5 C -0.019 4.019 6 H 0.041 0.959 7 N -0.294 5.294 8 C -0.007 4.007 9 C 0.028 3.972 10 C -0.523 4.523 11 H 0.071 0.929 12 C -0.170 4.170 13 N -0.547 5.547 14 Si 0.765 3.235 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.215 1.215 18 C -0.220 4.220 19 C -0.209 4.209 20 C 0.034 3.966 21 H 0.069 0.931 22 C -0.165 4.165 23 C -0.189 4.189 24 C -0.036 4.036 25 O -0.312 6.312 26 H 0.109 0.891 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.171 0.829 34 H 0.065 0.935 35 H 0.015 0.985 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.572 -7.006 13.912 15.587 hybrid contribution -0.859 0.228 -1.639 1.865 sum -1.430 -6.778 12.272 14.093 Atomic orbital electron populations 1.23982 0.95759 1.02405 1.01342 1.22984 0.96369 0.98095 0.99766 1.20789 0.98202 0.95907 0.98747 1.21504 0.97187 0.96497 0.98043 1.21387 0.92394 0.97348 0.90764 0.95923 1.60297 1.50660 1.11271 1.07147 1.21180 0.96184 0.88698 0.94645 1.18944 0.90957 0.92852 0.94474 1.20571 1.21377 1.02594 1.07736 0.92851 1.25545 0.95750 0.96594 0.99151 1.70107 1.18561 1.30525 1.35495 0.85816 0.77878 0.79855 0.79998 1.19084 1.20877 1.21525 1.22964 0.94615 1.05333 0.99131 1.22432 1.05695 0.95257 0.97563 1.22753 0.91244 0.97692 0.84927 0.93115 1.22678 0.98506 0.98516 0.96787 1.22967 1.00398 1.00965 0.94535 1.23588 0.90097 0.98239 0.91717 1.89075 1.31380 1.88309 1.22404 0.89067 0.86687 0.86250 0.92885 0.92542 0.90672 0.90485 0.82855 0.93518 0.98459 0.93471 0.89593 0.90789 0.92590 0.91414 0.90865 0.91263 0.90067 0.89446 0.87618 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.71 14.32 67.78 0.97 -3.74 16 2 C -0.15 -4.07 9.52 25.65 0.24 -3.83 16 3 C -0.10 -3.09 5.50 29.85 0.16 -2.93 16 4 C -0.09 -2.82 4.35 30.59 0.13 -2.69 16 5 C 0.09 3.09 2.15 44.92 0.10 3.18 16 6 H 0.02 0.85 7.81 -2.39 -0.02 0.83 16 7 N -0.66 -25.72 5.56 -491.55 -2.73 -28.45 16 8 C 0.12 5.40 5.56 86.30 0.48 5.88 16 9 C 0.03 1.36 1.76 -52.93 -0.09 1.26 16 10 C -0.48 -25.25 7.47 25.60 0.19 -25.06 16 11 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 12 C 0.03 1.56 5.39 84.65 0.46 2.02 16 13 N -0.91 -50.79 12.94 21.45 0.28 -50.51 16 14 Si 0.94 42.59 29.55 68.60 2.03 44.61 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 18 C -0.18 -7.80 9.88 30.60 0.30 -7.50 16 19 C -0.17 -8.07 9.48 30.60 0.29 -7.78 16 20 C 0.09 2.77 3.27 31.10 0.10 2.87 16 21 H 0.05 1.62 7.85 -2.39 -0.02 1.60 16 22 C -0.13 -3.37 5.98 31.61 0.19 -3.19 16 23 C -0.15 -2.98 7.09 31.61 0.22 -2.76 16 24 C 0.04 0.82 7.63 72.49 0.55 1.38 16 25 O -0.39 -11.19 10.25 -148.98 -1.53 -12.71 16 26 H 0.09 2.19 7.84 -2.91 -0.02 2.17 16 27 H 0.11 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 29 H 0.05 1.72 7.79 -2.38 -0.02 1.70 16 30 H 0.06 2.05 6.45 -2.39 -0.02 2.03 16 31 H 0.07 2.16 6.56 -2.38 -0.02 2.14 16 32 H 0.08 2.23 7.32 -2.39 -0.02 2.22 16 33 H 0.35 14.91 5.43 -89.69 -0.49 14.43 16 34 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 37 H 0.09 3.24 8.08 -2.39 -0.02 3.22 16 38 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.07 2.06 6.20 -2.39 -0.01 2.04 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -56.69 363.40 2.79 -53.90 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.44 Total: 36.01 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 4.30 Total: -42.85 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.45 Total: -78.96 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -1.53 Total: -12.71 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -56.69 2.79 -53.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883220608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.160 kcal (2) G-P(sol) polarization free energy of solvation -56.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds