Wall clock time and date at job start Tue Mar 31 2020 01:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 119.99946 * 2 1 4 4 C 1.52994 * 109.47148 * 124.99915 * 3 2 1 5 5 C 1.53000 * 109.46916 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47246 * 305.00229 * 5 4 3 7 7 N 1.46903 * 109.46955 * 65.00455 * 5 4 3 8 8 C 1.46902 * 110.99551 * 231.01072 * 7 5 4 9 9 C 1.53005 * 109.47012 * 178.38618 * 8 7 5 10 10 C 1.50705 * 115.54761 * 39.70640 * 9 8 7 11 11 H 1.07995 * 119.99907 * 264.91961 * 10 9 8 12 12 C 1.37871 * 119.99833 * 84.91918 * 10 9 8 13 13 N 1.31517 * 120.00175 * 1.10865 * 12 10 9 14 14 Si 1.86806 * 120.00096 * 181.10970 * 12 10 9 15 15 H 1.48499 * 109.47016 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47361 * 120.00097 * 14 12 10 17 17 H 1.48502 * 109.46937 * 240.00374 * 14 12 10 18 18 C 1.52994 * 117.49939 * 254.00409 * 9 8 7 19 19 C 1.52988 * 117.50014 * 185.37706 * 9 8 7 20 20 C 1.52999 * 109.47101 * 185.00208 * 5 4 3 21 21 H 1.09004 * 109.82429 * 298.28730 * 20 5 4 22 22 C 1.54376 * 109.83241 * 177.30895 * 20 5 4 23 23 C 1.55303 * 102.25581 * 219.12950 * 22 20 5 24 24 C 1.54950 * 100.94250 * 34.13177 * 23 22 20 25 25 O 1.43239 * 109.83395 * 59.17551 * 20 5 4 26 26 H 1.08003 * 120.00107 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00136 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00580 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46933 * 4.99964 * 3 2 1 30 30 H 1.08996 * 109.46788 * 245.00312 * 3 2 1 31 31 H 1.08996 * 109.47600 * 299.99900 * 4 3 2 32 32 H 1.09007 * 109.47035 * 60.00089 * 4 3 2 33 33 H 1.00901 * 111.00167 * 107.06022 * 7 5 4 34 34 H 1.09000 * 109.47162 * 298.38427 * 8 7 5 35 35 H 1.09000 * 109.47376 * 58.39155 * 8 7 5 36 36 H 0.96999 * 119.99997 * 185.01028 * 13 12 10 37 37 H 1.09004 * 117.49811 * 359.97438 * 18 9 8 38 38 H 1.08997 * 117.50280 * 145.01971 * 18 9 8 39 39 H 1.09006 * 117.50187 * 214.97955 * 19 9 8 40 40 H 1.09000 * 117.50206 * 359.97438 * 19 9 8 41 41 H 1.09006 * 110.85108 * 337.31795 * 22 20 5 42 42 H 1.09000 * 110.85322 * 100.94080 * 22 20 5 43 43 H 1.09007 * 111.12690 * 276.21280 * 23 22 20 44 44 H 1.09002 * 111.16587 * 152.06588 * 23 22 20 45 45 H 1.08997 * 110.30991 * 204.64667 * 24 23 22 46 46 H 1.09000 * 110.39360 * 82.51452 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1812 6 1 4.2865 2.7965 0.2154 7 7 2.8643 3.7644 1.4214 8 6 3.0208 4.8158 0.4075 9 6 2.0043 5.9296 0.6668 10 6 1.7833 6.2836 2.1149 11 1 0.9677 5.8345 2.6621 12 6 2.6222 7.1809 2.7410 13 7 3.6021 7.7444 2.0686 14 14 2.3671 7.5962 4.5443 15 1 1.2051 6.8344 5.0682 16 1 3.5848 7.2333 5.3129 17 1 2.1083 9.0517 4.6852 18 6 0.8021 6.0220 -0.2750 19 6 1.9209 7.0624 -0.3581 20 6 4.8584 2.6360 2.2862 21 1 4.3761 2.5282 3.2577 22 6 5.6809 3.9419 2.2498 23 6 7.1174 3.4354 2.5525 24 6 7.0933 2.0503 1.8582 25 8 5.7644 1.5478 2.0700 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 2.4773 1.2357 2.1130 32 1 3.7400 0.5066 1.0920 33 1 2.9783 4.1390 2.3514 34 1 4.0297 5.2250 0.4612 35 1 2.8522 4.3934 -0.5830 36 1 4.2360 8.3190 2.5255 37 1 0.7356 5.2896 -1.0795 38 1 -0.1491 6.3389 0.1526 39 1 1.7057 8.0638 0.0149 40 1 2.5904 7.0145 -1.2169 41 1 5.6322 4.4038 1.2636 42 1 5.3434 4.6346 3.0207 43 1 7.2803 3.3341 3.6256 44 1 7.8672 4.0868 2.1036 45 1 7.8264 1.3854 2.3148 46 1 7.2921 2.1565 0.7918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883220609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:23 Heat of formation + Delta-G solvation = -30.224125 kcal Electronic energy + Delta-G solvation = -23132.506084 eV Core-core repulsion = 20022.098742 eV Total energy + Delta-G solvation = -3110.407342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79627 -38.73524 -37.26139 -35.36680 -33.92534 -33.02050 -31.70197 -30.04778 -27.64159 -26.81423 -24.87938 -23.22367 -22.81978 -22.33364 -21.53203 -20.65464 -20.45962 -18.03771 -17.59774 -17.25990 -16.58505 -16.29980 -16.12828 -15.76560 -15.31677 -14.98030 -14.91956 -14.34178 -14.17299 -14.04915 -13.66900 -13.51256 -13.07803 -12.96185 -12.86287 -12.84860 -12.71012 -12.32619 -12.28486 -12.13506 -12.02738 -11.95832 -11.71737 -11.59137 -11.39106 -11.08609 -10.82776 -10.53857 -10.32651 -10.08923 -9.87595 -8.90672 -8.03887 -6.13118 1.38986 1.45415 1.51963 1.54212 2.45538 2.82619 3.23806 3.43657 3.58066 3.63670 3.77493 3.93959 4.14165 4.15256 4.27227 4.32152 4.40958 4.42453 4.49838 4.64304 4.65971 4.77281 4.78662 4.80139 4.86159 4.92437 4.94781 4.96103 4.99386 5.06968 5.15252 5.16994 5.18454 5.23217 5.32325 5.42559 5.55844 5.66639 5.70432 5.83864 5.85741 6.04954 6.06780 6.44327 6.60954 6.77671 6.94425 7.53562 9.03306 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011183 B = 0.007116 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.249849 B = 3933.591974 C = 5439.017778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.084 4.084 4 C -0.081 4.081 5 C 0.081 3.919 6 H 0.055 0.945 7 N -0.659 5.659 8 C 0.124 3.876 9 C 0.028 3.972 10 C -0.486 4.486 11 H 0.049 0.951 12 C 0.034 3.966 13 N -0.903 5.903 14 Si 0.934 3.066 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.290 1.290 18 C -0.190 4.190 19 C -0.164 4.164 20 C 0.070 3.930 21 H 0.075 0.925 22 C -0.150 4.150 23 C -0.149 4.149 24 C 0.048 3.952 25 O -0.388 6.388 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.342 0.658 34 H 0.007 0.993 35 H 0.046 0.954 36 H 0.256 0.744 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 -12.381 -1.678 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.172 4.172 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.030 4.030 6 H 0.073 0.927 7 N -0.292 5.292 8 C -0.006 4.006 9 C 0.028 3.972 10 C -0.525 4.525 11 H 0.067 0.933 12 C -0.166 4.166 13 N -0.541 5.541 14 Si 0.761 3.239 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.217 1.217 18 C -0.227 4.227 19 C -0.203 4.203 20 C 0.011 3.989 21 H 0.093 0.907 22 C -0.187 4.187 23 C -0.186 4.186 24 C -0.028 4.028 25 O -0.306 6.306 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.025 0.975 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.123 0.877 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.334 -12.728 -1.994 13.593 hybrid contribution 0.761 1.577 1.175 2.109 sum 5.095 -11.150 -0.818 12.287 Atomic orbital electron populations 1.23960 0.96097 1.02030 1.01799 1.23094 0.96239 0.98522 0.99347 1.20605 0.98322 0.95374 0.97866 1.21325 0.97104 0.95414 0.98132 1.21940 0.90989 0.93165 0.96872 0.92664 1.60588 1.51625 1.10102 1.06891 1.21247 0.95865 0.90430 0.93045 1.18976 0.93806 0.93503 0.90927 1.20571 1.13553 1.23334 0.95013 0.93300 1.25464 0.95679 0.95086 1.00359 1.70114 1.16073 1.32042 1.35905 0.85884 0.78172 0.77529 0.82356 1.19466 1.20534 1.21671 1.22973 0.93834 1.02499 1.03408 1.22384 1.01634 0.94703 1.01533 1.23291 0.91031 0.85878 0.98661 0.90733 1.23092 0.96229 0.97164 1.02258 1.23247 0.96096 0.97114 1.02145 1.23527 0.84548 0.94735 1.00034 1.88371 1.18331 1.31081 1.92859 0.89438 0.87159 0.86503 0.92084 0.92128 0.92830 0.91265 0.83742 0.97502 0.93554 0.93455 0.89751 0.91194 0.92580 0.91373 0.91894 0.91712 0.89837 0.88943 0.87713 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.76 14.32 67.78 0.97 -3.79 16 2 C -0.15 -3.78 9.52 25.65 0.24 -3.54 16 3 C -0.08 -2.41 5.54 29.85 0.17 -2.24 16 4 C -0.08 -2.39 4.79 30.59 0.15 -2.24 16 5 C 0.08 2.62 1.84 44.91 0.08 2.71 16 6 H 0.06 1.86 7.53 -2.39 -0.02 1.84 16 7 N -0.66 -25.25 5.45 -491.55 -2.68 -27.93 16 8 C 0.12 5.22 5.36 86.30 0.46 5.69 16 9 C 0.03 1.35 1.81 -52.93 -0.10 1.25 16 10 C -0.49 -25.17 7.39 25.60 0.19 -24.98 16 11 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 12 C 0.03 1.78 5.42 84.65 0.46 2.24 16 13 N -0.90 -48.86 12.73 21.45 0.27 -48.58 16 14 Si 0.93 41.87 29.54 68.60 2.03 43.90 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 18 C -0.19 -8.21 9.88 30.59 0.30 -7.91 16 19 C -0.16 -7.71 9.27 30.59 0.28 -7.43 16 20 C 0.07 2.17 2.87 31.06 0.09 2.26 16 21 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 22 C -0.15 -4.73 5.84 31.85 0.19 -4.55 16 23 C -0.15 -3.57 7.16 32.05 0.23 -3.34 16 24 C 0.05 1.08 7.78 72.65 0.57 1.65 16 25 O -0.39 -11.14 10.24 -148.98 -1.53 -12.67 16 26 H 0.09 2.23 7.84 -2.91 -0.02 2.21 16 27 H 0.11 2.11 8.06 -2.91 -0.02 2.08 16 28 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.06 2.02 7.40 -2.39 -0.02 2.00 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.92 7.53 -2.38 -0.02 1.90 16 33 H 0.34 14.41 6.72 -89.69 -0.60 13.80 16 34 H 0.01 0.32 6.49 -2.39 -0.02 0.30 16 35 H 0.05 1.85 7.92 -2.39 -0.02 1.83 16 36 H 0.26 13.40 8.32 -92.71 -0.77 12.63 16 37 H 0.08 3.26 8.08 -2.38 -0.02 3.24 16 38 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.06 2.88 8.14 -2.38 -0.02 2.86 16 40 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.06 2.21 6.26 -2.38 -0.01 2.20 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -54.59 365.68 2.69 -51.90 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: 0.32 Total: 37.60 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 4.28 Total: -44.22 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -2.41 Total: -76.52 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.53 Total: -12.67 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -54.59 2.69 -51.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883220609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.678 kcal (2) G-P(sol) polarization free energy of solvation -54.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds