Wall clock time and date at job start Tue Mar 31 2020 01:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 120.00136 * 2 1 4 4 C 1.52995 * 109.46907 * 125.00247 * 3 2 1 5 5 C 1.53001 * 109.46921 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47591 * 55.00008 * 5 4 3 7 7 N 1.46897 * 109.46918 * 294.99597 * 5 4 3 8 8 C 1.46904 * 110.99982 * 158.01492 * 7 5 4 9 9 C 1.53001 * 109.47213 * 174.93652 * 8 7 5 10 10 C 1.50703 * 115.55210 * 294.87164 * 9 8 7 11 11 H 1.08000 * 119.99879 * 98.92679 * 10 9 8 12 12 C 1.37881 * 119.99676 * 278.93435 * 10 9 8 13 13 N 1.31510 * 119.99834 * 355.05650 * 12 10 9 14 14 Si 1.86803 * 119.99656 * 175.05670 * 12 10 9 15 15 H 1.48499 * 109.46950 * 269.99801 * 14 12 10 16 16 H 1.48499 * 109.47074 * 29.99744 * 14 12 10 17 17 H 1.48495 * 109.46678 * 149.99831 * 14 12 10 18 18 C 1.53001 * 117.51753 * 80.57222 * 9 8 7 19 19 C 1.52998 * 59.99957 * 107.48379 * 18 9 8 20 20 C 1.53000 * 109.47161 * 175.00061 * 5 4 3 21 21 H 1.08999 * 109.87288 * 173.14088 * 20 5 4 22 22 C 1.54107 * 109.87930 * 294.15103 * 20 5 4 23 23 C 1.54807 * 104.18513 * 121.45423 * 22 20 5 24 24 C 1.54994 * 102.09673 * 20.88275 * 23 22 20 25 25 O 1.43745 * 109.87911 * 52.13650 * 20 5 4 26 26 H 1.07998 * 120.00004 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99828 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00446 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46518 * 5.00593 * 3 2 1 30 30 H 1.08994 * 109.47449 * 245.00479 * 3 2 1 31 31 H 1.08997 * 109.47606 * 60.00001 * 4 3 2 32 32 H 1.09005 * 109.47326 * 299.99892 * 4 3 2 33 33 H 1.00904 * 111.00036 * 34.06418 * 7 5 4 34 34 H 1.08996 * 109.46864 * 54.93958 * 8 7 5 35 35 H 1.09000 * 109.47084 * 294.93587 * 8 7 5 36 36 H 0.97001 * 119.99767 * 180.02562 * 13 12 10 37 37 H 1.09004 * 117.49499 * 214.97301 * 18 9 8 38 38 H 1.09004 * 117.49807 * 359.97438 * 18 9 8 39 39 H 1.09003 * 117.49227 * 252.51363 * 19 18 9 40 40 H 1.08993 * 117.50344 * 107.49215 * 19 18 9 41 41 H 1.08998 * 110.48424 * 240.13191 * 22 20 5 42 42 H 1.08996 * 110.48556 * 2.64177 * 22 20 5 43 43 H 1.08998 * 110.90507 * 139.07928 * 23 22 20 44 44 H 1.08998 * 110.90511 * 262.64243 * 23 22 20 45 45 H 1.09000 * 110.61813 * 81.47589 * 24 23 22 46 46 H 1.09006 * 110.61763 * 204.47801 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 1 3.0912 3.4866 1.1822 7 7 4.6442 2.7367 -0.0174 8 6 4.9773 4.1314 -0.3365 9 6 5.9569 4.1659 -1.5114 10 6 7.3124 3.5633 -1.2454 11 1 7.5283 2.5558 -1.5688 12 6 8.2767 4.2984 -0.5891 13 7 8.0486 5.5565 -0.2816 14 14 9.9073 3.5072 -0.1368 15 1 9.8048 2.8996 1.2143 16 1 10.2385 2.4535 -1.1295 17 1 10.9749 4.5394 -0.1358 18 6 5.3782 4.0095 -2.9191 19 6 5.8920 5.3722 -2.4502 20 6 4.6794 2.7393 2.4312 21 1 5.3168 3.6219 2.3789 22 6 3.7950 2.8054 3.6915 23 6 4.2298 1.5755 4.5250 24 6 5.6346 1.2706 3.9455 25 8 5.4898 1.5567 2.5358 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3586 2.1317 0.0897 30 1 2.6213 1.4027 -0.9313 31 1 3.7400 0.5065 1.0920 32 1 2.4773 1.2355 2.1130 33 1 4.2013 2.2822 -0.8019 34 1 5.4356 4.6034 0.5325 35 1 4.0684 4.6697 -0.6054 36 1 8.7272 6.0738 0.1798 37 1 5.9779 3.4708 -3.6528 38 1 4.2993 3.8816 -3.0084 39 1 5.1510 6.1411 -2.2310 40 1 6.8296 5.7301 -2.8754 41 1 3.9847 3.7264 4.2427 42 1 2.7412 2.7332 3.4222 43 1 4.2918 1.8257 5.5841 44 1 3.5517 0.7373 4.3643 45 1 6.3842 1.9235 4.3927 46 1 5.8947 0.2234 4.1003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883220610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:28 Heat of formation + Delta-G solvation = -10.081947 kcal Electronic energy + Delta-G solvation = -23008.737489 eV Core-core repulsion = 19899.203577 eV Total energy + Delta-G solvation = -3109.533912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.46396 -37.12329 -36.05304 -34.07381 -31.84423 -31.72747 -30.42042 -28.97696 -25.84557 -25.03395 -23.46186 -22.66170 -21.26463 -20.93889 -19.80356 -19.46682 -18.86835 -16.27783 -16.15145 -15.58307 -15.22395 -14.95264 -14.81201 -14.37933 -14.11153 -13.48731 -13.44230 -13.33527 -13.24323 -12.70359 -12.17660 -11.82861 -11.72188 -11.48349 -11.37694 -11.29952 -10.98632 -10.83446 -10.79680 -10.75783 -10.63840 -10.42280 -10.33972 -10.27504 -10.05867 -9.35176 -9.25903 -9.09296 -8.79525 -8.24845 -7.94205 -7.38747 -5.84793 -3.85217 2.26530 3.44016 3.49382 3.53739 4.23199 4.58414 4.72027 4.76548 4.83451 5.02818 5.09554 5.13327 5.24418 5.37305 5.43678 5.46629 5.51494 5.55909 5.66664 5.79486 5.79773 5.82980 5.89621 5.91987 6.00217 6.07041 6.19034 6.24549 6.31207 6.39144 6.45943 6.54545 6.58537 6.64803 6.71189 6.77646 6.81925 6.98999 7.20917 7.38658 7.57671 7.67068 8.06771 8.10110 8.28707 8.66573 9.12786 9.77486 11.24908 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.006263 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.464389 B = 4469.307439 C = 5820.477522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.139 4.139 3 C -0.102 4.102 4 C -0.108 4.108 5 C 0.092 3.908 6 H 0.040 0.960 7 N -0.656 5.656 8 C 0.108 3.892 9 C 0.054 3.946 10 C -0.461 4.461 11 H 0.057 0.943 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.888 3.112 15 H -0.281 1.281 16 H -0.276 1.276 17 H -0.292 1.292 18 C -0.217 4.217 19 C -0.158 4.158 20 C 0.092 3.908 21 H 0.071 0.929 22 C -0.155 4.155 23 C -0.153 4.153 24 C 0.040 3.960 25 O -0.343 6.343 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.331 0.669 34 H 0.073 0.927 35 H -0.008 1.008 36 H 0.255 0.745 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.454 -7.156 7.161 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.157 4.157 3 C -0.139 4.139 4 C -0.146 4.146 5 C -0.019 4.019 6 H 0.058 0.942 7 N -0.288 5.288 8 C -0.021 4.021 9 C 0.053 3.947 10 C -0.499 4.499 11 H 0.076 0.924 12 C -0.133 4.133 13 N -0.528 5.528 14 Si 0.716 3.284 15 H -0.207 1.207 16 H -0.201 1.201 17 H -0.218 1.218 18 C -0.254 4.254 19 C -0.196 4.196 20 C 0.033 3.967 21 H 0.089 0.911 22 C -0.193 4.193 23 C -0.190 4.190 24 C -0.037 4.037 25 O -0.262 6.262 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.010 0.990 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.686 -7.222 7.402 15.605 hybrid contribution -0.038 0.218 0.196 0.296 sum -11.724 -7.004 7.598 15.628 Atomic orbital electron populations 1.23783 0.95996 1.01452 1.03275 1.23013 0.95868 0.98781 0.98043 1.20887 0.98188 0.94925 0.99885 1.21581 0.97132 0.98772 0.97127 1.21617 0.92107 0.96111 0.92036 0.94241 1.60233 1.45843 1.17673 1.05053 1.21567 0.94281 0.86314 0.99924 1.18818 0.94441 0.96687 0.84776 1.20278 0.94361 0.99152 1.36105 0.92435 1.24886 0.98019 0.94591 0.95790 1.70017 1.34337 1.07163 1.41264 0.86667 0.83670 0.78893 0.79144 1.20666 1.20110 1.21812 1.22954 0.97270 1.02659 1.02513 1.22513 1.00296 0.89991 1.06788 1.22725 0.91346 0.89522 0.93107 0.91076 1.23057 1.00912 0.98575 0.96752 1.23095 0.97981 0.98297 0.99654 1.23535 0.95663 1.00904 0.83581 1.89107 1.71206 1.44497 1.21359 0.88864 0.88870 0.87395 0.92038 0.90513 0.89974 0.92011 0.84934 0.90907 0.99017 0.93533 0.90613 0.92338 0.92393 0.89956 0.91076 0.90663 0.90923 0.90876 0.92734 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.08 14.32 29.01 0.42 -1.67 16 2 C -0.14 -1.54 9.52 -36.02 -0.34 -1.89 16 3 C -0.10 -1.25 5.48 -27.88 -0.15 -1.40 16 4 C -0.11 -1.48 4.36 -26.73 -0.12 -1.59 16 5 C 0.09 1.49 1.76 -67.71 -0.12 1.37 16 6 H 0.04 0.63 7.90 -51.93 -0.41 0.22 16 7 N -0.66 -12.93 6.17 -106.72 -0.66 -13.58 16 8 C 0.11 2.41 5.30 -3.82 -0.02 2.39 16 9 C 0.05 1.33 1.56 -155.66 -0.24 1.08 16 10 C -0.46 -12.84 8.72 -34.44 -0.30 -13.14 16 11 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 12 C 0.07 1.92 5.44 -17.82 -0.10 1.82 16 13 N -0.89 -25.65 12.84 55.43 0.71 -24.94 16 14 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 C -0.22 -4.79 9.96 -26.73 -0.27 -5.06 16 19 C -0.16 -3.78 9.37 -26.73 -0.25 -4.03 16 20 C 0.09 1.54 3.25 -26.15 -0.08 1.45 16 21 H 0.07 1.41 7.09 -51.93 -0.37 1.04 16 22 C -0.15 -1.96 6.11 -25.20 -0.15 -2.11 16 23 C -0.15 -1.72 7.16 -24.73 -0.18 -1.90 16 24 C 0.04 0.56 7.72 38.21 0.29 0.86 16 25 O -0.34 -6.26 10.33 -35.23 -0.36 -6.63 16 26 H 0.09 0.81 8.06 -52.49 -0.42 0.38 16 27 H 0.09 0.89 7.84 -52.49 -0.41 0.48 16 28 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 30 H 0.08 1.02 6.42 -51.93 -0.33 0.68 16 31 H 0.08 1.25 7.70 -51.93 -0.40 0.85 16 32 H 0.06 0.76 6.68 -51.93 -0.35 0.42 16 33 H 0.33 6.15 6.55 -39.29 -0.26 5.89 16 34 H 0.07 1.82 7.06 -51.93 -0.37 1.46 16 35 H -0.01 -0.17 8.09 -51.93 -0.42 -0.59 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.86 6.68 -51.93 -0.35 0.51 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -29.57 365.54 -9.70 -39.27 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.26 Total: 7.00 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -1.61 Total: -23.82 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.05 Total: -38.52 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.36 Total: -6.63 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.57 -9.70 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883220610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.184 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds