Wall clock time and date at job start Tue Mar 31 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99804 * 2 1 4 4 C 1.53009 * 109.46771 * 125.00244 * 3 2 1 5 5 C 1.52998 * 109.46900 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46878 * 304.99817 * 5 4 3 7 7 N 1.46896 * 109.47147 * 65.00048 * 5 4 3 8 8 C 1.46895 * 111.00074 * 53.12186 * 7 5 4 9 9 C 1.53005 * 109.47229 * 187.64173 * 8 7 5 10 10 C 1.50703 * 115.54885 * 39.91022 * 9 8 7 11 11 H 1.07997 * 119.99872 * 264.71745 * 10 9 8 12 12 C 1.37876 * 119.99649 * 84.71605 * 10 9 8 13 13 N 1.31509 * 120.00211 * 4.80751 * 12 10 9 14 14 Si 1.86803 * 119.99776 * 184.80910 * 12 10 9 15 15 H 1.48504 * 109.46998 * 60.00053 * 14 12 10 16 16 H 1.48504 * 109.47240 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46967 * 299.99931 * 14 12 10 18 18 C 1.53002 * 117.49648 * 254.20500 * 9 8 7 19 19 C 1.52996 * 117.49864 * 185.58404 * 9 8 7 20 20 C 1.53001 * 109.46720 * 185.00221 * 5 4 3 21 21 H 1.08991 * 110.28075 * 62.17934 * 20 5 4 22 22 C 1.54949 * 110.30935 * 184.37747 * 20 5 4 23 23 C 1.55299 * 100.94315 * 155.35865 * 22 20 5 24 24 C 1.54381 * 102.25349 * 325.86171 * 23 22 20 25 25 O 1.43236 * 107.58675 * 21.36322 * 24 23 22 26 26 H 1.08006 * 120.00177 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00243 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.99986 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47560 * 5.00806 * 3 2 1 30 30 H 1.08997 * 109.47564 * 244.99676 * 3 2 1 31 31 H 1.09001 * 109.46620 * 59.99986 * 4 3 2 32 32 H 1.08993 * 109.47065 * 300.00094 * 4 3 2 33 33 H 1.00894 * 110.99971 * 289.16059 * 7 5 4 34 34 H 1.09004 * 109.46978 * 307.63762 * 8 7 5 35 35 H 1.09001 * 109.47957 * 67.63880 * 8 7 5 36 36 H 0.97004 * 120.00242 * 184.99220 * 13 12 10 37 37 H 1.08997 * 117.50259 * 0.02562 * 18 9 8 38 38 H 1.08999 * 117.49618 * 145.01833 * 18 9 8 39 39 H 1.09000 * 117.49968 * 214.97744 * 19 9 8 40 40 H 1.08998 * 117.50450 * 359.97438 * 19 9 8 41 41 H 1.08999 * 111.12442 * 273.27683 * 22 20 5 42 42 H 1.09001 * 111.12910 * 37.43483 * 22 20 5 43 43 H 1.09004 * 110.84631 * 207.67673 * 23 22 20 44 44 H 1.09001 * 111.02729 * 84.13684 * 23 22 20 45 45 H 1.08993 * 109.83363 * 261.84523 * 24 23 22 46 46 H 1.08999 * 109.82896 * 140.87140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7995 2.6583 1.1821 6 1 4.2855 2.7977 0.2164 7 7 2.8628 3.7639 1.4230 8 6 2.0704 3.5275 2.6371 9 6 0.9815 4.5962 2.7516 10 6 0.3079 4.9789 1.4590 11 1 0.6551 5.8370 0.9026 12 6 -0.7516 4.2337 0.9868 13 7 -1.2353 3.2470 1.7093 14 14 -1.4999 4.6254 -0.6793 15 1 -0.4634 4.4833 -1.7333 16 1 -2.6172 3.6862 -0.9534 17 1 -2.0146 6.0183 -0.6757 18 6 1.1767 5.6941 3.7992 19 6 0.1284 4.6022 4.0217 20 6 4.8576 2.6363 2.2871 21 1 5.5825 1.8442 2.1002 22 6 5.5696 4.0095 2.3773 23 6 6.0569 3.9926 3.8518 24 6 4.9249 3.2198 4.5621 25 8 4.2361 2.4512 3.5689 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6213 1.4027 -0.9313 31 1 3.7399 0.5065 1.0920 32 1 2.4773 1.2355 2.1130 33 1 2.2648 3.9117 0.6239 34 1 1.6079 2.5419 2.5829 35 1 2.7205 3.5761 3.5106 36 1 -1.9318 2.6770 1.3475 37 1 2.0811 5.6554 4.4064 38 1 0.8181 6.6937 3.5535 39 1 -0.9200 4.8834 3.9224 40 1 0.3425 3.8446 4.7755 41 1 6.4109 4.0620 1.6862 42 1 4.8699 4.8271 2.2041 43 1 6.1403 5.0061 4.2444 44 1 7.0053 3.4634 3.9442 45 1 4.2352 3.9218 5.0304 46 1 5.3472 2.5557 5.3162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883220611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:31 Heat of formation + Delta-G solvation = -18.159385 kcal Electronic energy + Delta-G solvation = -23956.403609 eV Core-core repulsion = 20846.519433 eV Total energy + Delta-G solvation = -3109.884176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81810 -38.59865 -37.36762 -35.08895 -33.88061 -32.85804 -31.37889 -30.09840 -27.60131 -26.60346 -25.35717 -23.18200 -22.79417 -22.14147 -21.07844 -20.56961 -20.47827 -18.16665 -17.46646 -16.70733 -16.61731 -16.41079 -15.92721 -15.79949 -15.46682 -15.03571 -14.70598 -14.33391 -14.05458 -13.90668 -13.70255 -13.48442 -13.03895 -12.94113 -12.79545 -12.65330 -12.47800 -12.34152 -12.30992 -12.04876 -11.96381 -11.76704 -11.55704 -11.45041 -11.29239 -11.04508 -10.83881 -10.25532 -10.16081 -10.00394 -9.82605 -8.75287 -7.99013 -6.08523 1.40679 1.43509 1.43736 1.48192 2.46217 3.07665 3.27661 3.54591 3.72401 3.78385 3.99586 4.14210 4.15785 4.20669 4.26820 4.43885 4.47723 4.52239 4.53203 4.71074 4.76370 4.79953 4.82770 4.87802 4.94743 4.99509 5.03696 5.06570 5.08269 5.11143 5.21294 5.29162 5.32801 5.35515 5.49776 5.57839 5.64512 5.72276 5.74625 5.79738 5.92090 6.00580 6.32707 6.52463 6.71812 6.92772 7.01309 7.56998 9.06643 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.007731 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.025650 B = 3620.913436 C = 4674.563663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.095 4.095 4 C -0.132 4.132 5 C 0.082 3.918 6 H 0.100 0.900 7 N -0.663 5.663 8 C 0.120 3.880 9 C 0.029 3.971 10 C -0.493 4.493 11 H 0.048 0.952 12 C 0.041 3.959 13 N -0.892 5.892 14 Si 0.924 3.076 15 H -0.267 1.267 16 H -0.292 1.292 17 H -0.280 1.280 18 C -0.191 4.191 19 C -0.166 4.166 20 C 0.090 3.910 21 H 0.081 0.919 22 C -0.141 4.141 23 C -0.145 4.145 24 C 0.044 3.956 25 O -0.394 6.394 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.339 0.661 34 H 0.000 1.000 35 H 0.075 0.925 36 H 0.254 0.746 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.297 -3.837 -0.257 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.171 4.171 5 C -0.029 4.029 6 H 0.117 0.883 7 N -0.295 5.295 8 C -0.009 4.009 9 C 0.028 3.972 10 C -0.532 4.532 11 H 0.066 0.934 12 C -0.161 4.161 13 N -0.530 5.530 14 Si 0.751 3.249 15 H -0.192 1.192 16 H -0.218 1.218 17 H -0.206 1.206 18 C -0.228 4.228 19 C -0.204 4.204 20 C 0.032 3.968 21 H 0.099 0.901 22 C -0.178 4.178 23 C -0.182 4.182 24 C -0.033 4.033 25 O -0.314 6.314 26 H 0.088 0.912 27 H 0.128 0.872 28 H 0.145 0.855 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.018 0.982 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.398 -3.662 0.126 14.857 hybrid contribution -1.792 -0.408 -0.941 2.065 sum 12.606 -4.070 -0.815 13.272 Atomic orbital electron populations 1.23897 0.96767 1.01295 1.02082 1.23045 0.95694 0.98809 0.99098 1.20749 0.98238 0.95329 0.98921 1.22013 0.98187 0.99296 0.97584 1.21884 0.93833 0.89148 0.98022 0.88250 1.60706 1.22239 1.39801 1.06724 1.21466 0.92135 0.94314 0.92991 1.19179 0.94972 0.94369 0.88669 1.20503 1.13811 1.12703 1.06152 0.93373 1.25399 0.96090 0.95729 0.98842 1.70135 1.27869 1.18804 1.36174 0.86162 0.78408 0.77592 0.82787 1.19193 1.21797 1.20590 1.22936 0.99500 0.94294 1.06048 1.22296 0.95026 1.00626 1.02428 1.23102 0.93145 0.97266 0.83262 0.90095 1.23182 1.00386 0.97633 0.96626 1.23052 0.98384 1.01562 0.95218 1.23125 0.93997 0.94417 0.91727 1.88487 1.55684 1.69181 1.18052 0.91208 0.87241 0.85511 0.93837 0.90164 0.90730 0.93533 0.84087 0.98220 0.90747 0.93660 0.90039 0.91375 0.92795 0.92203 0.88830 0.90361 0.89742 0.89222 0.93058 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.23 14.32 67.78 0.97 -6.26 16 2 C -0.15 -4.82 9.52 25.65 0.24 -4.58 16 3 C -0.10 -3.25 5.44 29.85 0.16 -3.09 16 4 C -0.13 -4.29 4.08 30.60 0.12 -4.17 16 5 C 0.08 2.52 2.64 44.92 0.12 2.64 16 6 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 7 N -0.66 -25.56 5.18 -491.57 -2.55 -28.11 16 8 C 0.12 5.31 4.66 86.31 0.40 5.72 16 9 C 0.03 1.41 1.84 -52.93 -0.10 1.31 16 10 C -0.49 -26.17 7.20 25.60 0.18 -25.98 16 11 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 12 C 0.04 2.17 5.43 84.66 0.46 2.63 16 13 N -0.89 -50.00 12.66 21.45 0.27 -49.73 16 14 Si 0.92 42.93 29.54 68.60 2.03 44.96 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 C -0.19 -8.58 9.88 30.59 0.30 -8.28 16 19 C -0.17 -8.23 9.18 30.59 0.28 -7.95 16 20 C 0.09 2.43 3.24 31.26 0.10 2.53 16 21 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 22 C -0.14 -3.35 6.50 32.05 0.21 -3.14 16 23 C -0.14 -2.97 7.02 31.85 0.22 -2.74 16 24 C 0.04 1.13 7.34 72.45 0.53 1.67 16 25 O -0.39 -12.67 7.41 -148.98 -1.10 -13.78 16 26 H 0.07 2.97 7.84 -2.91 -0.02 2.95 16 27 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.04 1.85 6.70 -2.39 -0.02 1.84 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.87 5.59 -2.39 -0.01 1.85 16 33 H 0.34 14.60 6.05 -89.70 -0.54 14.05 16 34 H 0.00 -0.01 5.65 -2.38 -0.01 -0.02 16 35 H 0.07 3.21 4.50 -2.39 -0.01 3.20 16 36 H 0.25 13.94 8.32 -92.71 -0.77 13.17 16 37 H 0.08 3.29 8.08 -2.39 -0.02 3.27 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.05 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 2.32 7.15 -2.39 -0.02 2.30 16 43 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.46 7.79 -2.39 -0.02 1.44 16 46 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -58.83 355.59 3.26 -55.58 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: 0.39 Total: 40.76 kcal Atomic # 6 Polarization: -53.90 SS G_CDS: 4.22 Total: -49.68 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -2.28 Total: -77.84 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.10 Total: -13.78 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -58.83 3.26 -55.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883220611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.416 kcal (2) G-P(sol) polarization free energy of solvation -58.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds