Wall clock time and date at job start Tue Mar 31 2020 02:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99726 * 2 1 4 4 N 1.46903 * 109.47261 * 125.00057 * 3 2 1 5 5 C 1.46897 * 110.99940 * 288.36377 * 4 3 2 6 6 C 1.50699 * 109.47126 * 160.55214 * 5 4 3 7 7 H 1.08001 * 120.00015 * 4.45640 * 6 5 4 8 8 C 1.37883 * 119.99758 * 184.46187 * 6 5 4 9 9 N 1.31515 * 119.99443 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00206 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47250 * 89.99506 * 10 8 6 12 12 H 1.48495 * 109.47322 * 209.99501 * 10 8 6 13 13 H 1.48501 * 109.46979 * 330.00077 * 10 8 6 14 14 C 1.46897 * 111.00256 * 164.40621 * 4 3 2 15 15 C 1.53009 * 109.47000 * 293.95595 * 14 4 3 16 16 H 1.08995 * 109.39777 * 60.10864 * 15 14 4 17 17 C 1.53070 * 109.43259 * 180.02562 * 15 14 4 18 18 C 1.53357 * 109.08133 * 179.48250 * 17 15 14 19 19 C 1.52855 * 108.73919 * 305.14750 * 18 17 15 20 20 C 1.53329 * 113.58839 * 184.28249 * 19 18 17 21 21 C 1.53864 * 86.95960 * 89.47373 * 20 19 18 22 22 C 1.53349 * 113.54205 * 282.26089 * 19 18 17 23 23 C 1.52752 * 112.68814 * 53.21224 * 19 18 17 24 24 O 1.42870 * 109.43150 * 300.22317 * 15 14 4 25 25 H 1.08002 * 119.99694 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00273 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00152 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47604 * 5.00056 * 3 2 1 29 29 H 1.09007 * 109.47022 * 244.99909 * 3 2 1 30 30 H 1.09007 * 109.46879 * 280.54812 * 5 4 3 31 31 H 1.09000 * 109.47534 * 40.54659 * 5 4 3 32 32 H 0.97002 * 119.99407 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.46923 * 173.95742 * 14 4 3 34 34 H 1.08997 * 109.46966 * 53.95331 * 14 4 3 35 35 H 1.08999 * 109.53939 * 59.60107 * 17 15 14 36 36 H 1.09002 * 109.53592 * 299.35842 * 17 15 14 37 37 H 1.08997 * 109.59552 * 185.37086 * 18 17 15 38 38 H 1.08999 * 109.58909 * 64.92120 * 18 17 15 39 39 H 1.09001 * 113.63261 * 334.96139 * 20 19 18 40 40 H 1.08989 * 113.63571 * 203.99200 * 20 19 18 41 41 H 1.08997 * 113.60145 * 139.67903 * 21 20 19 42 42 H 1.08996 * 113.60390 * 270.54816 * 21 20 19 43 43 H 1.09001 * 113.63700 * 155.97043 * 22 19 18 44 44 H 1.08998 * 113.63664 * 24.99620 * 22 19 18 45 45 H 1.09001 * 109.52536 * 66.27015 * 23 19 18 46 46 H 1.08999 * 109.52611 * 186.47740 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3321 1.1345 5 6 2.2751 1.4807 2.4056 6 6 3.1607 1.0352 3.5407 7 1 4.1829 0.7458 3.3465 8 6 2.6658 0.9971 4.8271 9 7 3.4385 0.6079 5.8175 10 14 0.8979 1.4982 5.1630 11 1 0.0167 0.3079 5.0539 12 1 0.7957 2.0659 6.5313 13 1 0.4757 2.5191 4.1706 14 6 3.9960 2.3956 0.9690 15 6 4.8902 2.0728 -0.2300 16 1 4.2790 2.0067 -1.1300 17 6 5.9320 3.1811 -0.4013 18 6 6.8315 2.8433 -1.5965 19 6 7.4261 1.4510 -1.3855 20 6 8.4298 1.0417 -2.4699 21 6 9.5162 1.6887 -1.5932 22 6 8.5928 1.4276 -0.3905 23 6 6.3617 0.3921 -1.1046 24 8 5.5483 0.8240 -0.0095 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 2.0007 2.5261 2.5476 31 1 1.3738 0.8680 2.3859 32 1 3.0904 0.5814 6.7226 33 1 4.6063 2.4638 1.8695 34 1 3.4905 3.3462 0.7997 35 1 6.5380 3.2546 0.5017 36 1 5.4278 4.1306 -0.5815 37 1 7.6346 3.5767 -1.6684 38 1 6.2411 2.8535 -2.5126 39 1 8.2764 1.5503 -3.4217 40 1 8.5407 -0.0371 -2.5780 41 1 10.4461 1.1210 -1.5607 42 1 9.6725 2.7470 -1.8018 43 1 8.7488 0.4556 0.0773 44 1 8.5702 2.2463 0.3288 45 1 5.7399 0.2569 -1.9896 46 1 6.8446 -0.5513 -0.8498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886216236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:42 Heat of formation + Delta-G solvation = -23.258705 kcal Electronic energy + Delta-G solvation = -22927.554228 eV Core-core repulsion = 19817.448929 eV Total energy + Delta-G solvation = -3110.105299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42547 -39.21566 -37.66295 -34.92378 -34.35216 -33.49351 -31.09658 -29.60855 -27.83747 -26.56324 -26.02020 -24.67171 -23.47183 -22.04408 -21.69326 -20.59897 -19.15891 -18.94107 -17.41490 -16.94880 -16.64687 -16.45281 -16.24439 -16.05375 -15.20299 -15.10074 -14.93307 -14.77736 -14.46574 -14.10920 -13.92525 -13.72865 -13.48882 -13.19787 -13.05284 -12.84864 -12.57813 -12.38961 -12.26563 -12.02235 -11.96497 -11.87457 -11.85862 -11.72072 -11.42475 -11.28900 -11.02484 -10.82785 -10.75725 -10.19853 -10.00078 -8.92679 -8.25378 -6.27324 1.33289 1.34951 1.42579 1.46022 2.35294 2.93089 3.06355 3.24238 3.66720 3.69367 3.72920 3.95870 4.03251 4.07582 4.11696 4.15694 4.27737 4.30309 4.50387 4.53447 4.55863 4.65191 4.69920 4.73089 4.79016 4.81785 4.87687 4.88818 4.92167 4.99964 5.06725 5.08683 5.09464 5.12338 5.14397 5.22092 5.38893 5.49017 5.58333 5.61568 5.76837 5.82752 6.09625 6.38697 6.59618 6.72462 6.79772 7.35295 8.92104 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.004760 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.395846 B = 5881.513042 C = 6729.322501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C 0.077 3.923 4 N -0.532 5.532 5 C 0.177 3.823 6 C -0.507 4.507 7 H 0.031 0.969 8 C 0.006 3.994 9 N -0.951 5.951 10 Si 0.946 3.054 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.251 1.251 14 C 0.070 3.930 15 C 0.104 3.896 16 H 0.065 0.935 17 C -0.146 4.146 18 C -0.087 4.087 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.131 4.131 22 C -0.136 4.136 23 C 0.070 3.930 24 O -0.386 6.386 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.035 0.965 29 H 0.091 0.909 30 H -0.015 1.015 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 4.849 -20.565 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.165 4.165 3 C -0.051 4.051 4 N -0.255 5.255 5 C 0.050 3.950 6 C -0.545 4.545 7 H 0.049 0.951 8 C -0.190 4.190 9 N -0.592 5.592 10 Si 0.769 3.231 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.175 1.175 14 C -0.058 4.058 15 C 0.046 3.954 16 H 0.082 0.918 17 C -0.184 4.184 18 C -0.124 4.124 19 C -0.120 4.120 20 C -0.156 4.156 21 C -0.168 4.168 22 C -0.173 4.173 23 C -0.006 4.006 24 O -0.305 6.305 25 H 0.129 0.871 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.109 0.891 30 H 0.002 0.998 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.901 4.278 -20.198 21.220 hybrid contribution -0.831 0.680 0.907 1.406 sum 4.070 4.958 -19.291 20.329 Atomic orbital electron populations 1.23949 0.95378 1.02572 1.01230 1.22888 0.96053 0.98402 0.99179 1.21350 0.94207 0.94795 0.94699 1.61724 1.15251 1.46937 1.01637 1.19888 0.93727 0.93776 0.87656 1.21255 0.98632 1.43102 0.91534 0.95079 1.25847 1.02398 0.95066 0.95738 1.70073 1.38561 1.50019 1.00557 0.85734 0.79797 0.79623 0.77899 1.19056 1.20621 1.17525 1.22026 0.93606 0.92002 0.98154 1.22083 0.92356 0.84461 0.96475 0.91759 1.22168 0.97934 0.98824 0.99497 1.21326 0.98943 0.94659 0.97466 1.22258 0.94644 0.96574 0.98486 1.22811 0.94564 1.01288 0.96960 1.22827 0.97201 1.01489 0.95332 1.22883 0.96455 1.01297 0.96690 1.22649 0.91614 0.96767 0.89617 1.88177 1.63447 1.37897 1.40968 0.87127 0.88089 0.88083 0.94728 0.89146 0.99754 0.95376 0.92573 0.93066 0.93171 0.92729 0.89339 0.89994 0.90272 0.89969 0.89637 0.90897 0.89403 0.91262 0.92900 0.92765 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.46 14.32 67.78 0.97 -4.49 16 2 C -0.15 -4.84 8.74 25.65 0.22 -4.61 16 3 C 0.08 2.60 5.28 85.56 0.45 3.05 16 4 N -0.53 -22.94 4.24 -905.35 -3.83 -26.78 16 5 C 0.18 8.85 3.65 85.56 0.31 9.16 16 6 C -0.51 -30.88 9.16 25.60 0.23 -30.64 16 7 H 0.03 2.16 7.90 -2.91 -0.02 2.13 16 8 C 0.01 0.37 5.47 84.66 0.46 0.83 16 9 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 10 Si 0.95 45.62 27.38 68.60 1.88 47.50 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.25 -11.30 6.67 99.48 0.66 -10.64 16 14 C 0.07 2.73 4.47 86.31 0.39 3.11 16 15 C 0.10 3.26 2.49 30.62 0.08 3.33 16 16 H 0.06 1.78 6.29 -2.39 -0.02 1.77 16 17 C -0.15 -3.66 5.35 30.74 0.16 -3.49 16 18 C -0.09 -1.69 5.11 30.67 0.16 -1.53 16 19 C -0.12 -2.56 0.86 -52.09 -0.04 -2.60 16 20 C -0.12 -1.90 7.23 31.00 0.22 -1.68 16 21 C -0.13 -2.17 7.73 31.17 0.24 -1.93 16 22 C -0.14 -3.14 7.13 31.00 0.22 -2.92 16 23 C 0.07 1.88 6.02 71.90 0.43 2.31 16 24 O -0.39 -14.10 10.27 -148.98 -1.53 -15.64 16 25 H 0.11 2.72 8.06 -2.91 -0.02 2.70 16 26 H 0.10 2.61 7.84 -2.91 -0.02 2.59 16 27 H 0.10 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.03 1.11 7.71 -2.39 -0.02 1.09 16 29 H 0.09 2.66 5.95 -2.38 -0.01 2.64 16 30 H -0.02 -0.75 7.37 -2.38 -0.02 -0.77 16 31 H 0.03 1.40 6.30 -2.39 -0.02 1.38 16 32 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 33 H 0.05 2.40 7.31 -2.39 -0.02 2.38 16 34 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 35 H 0.05 1.59 7.66 -2.39 -0.02 1.57 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 1.37 7.34 -2.39 -0.02 1.35 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 40 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.28 7.64 -2.39 -0.02 1.27 16 43 H 0.07 1.75 8.03 -2.39 -0.02 1.73 16 44 H 0.05 1.36 7.62 -2.39 -0.02 1.34 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 2.26 8.04 -2.39 -0.02 2.24 16 Total: -1.00 -71.66 354.03 2.20 -69.46 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.87 Total: 19.02 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 4.51 Total: -32.12 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -3.54 Total: -88.22 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.53 Total: -15.64 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Total: -71.66 2.20 -69.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886216236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.200 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds