Wall clock time and date at job start Tue Mar 31 2020 01:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53234 * 108.53917 * 128.92764 * 3 2 1 5 5 C 1.52956 * 109.40419 * 54.62280 * 4 3 2 6 6 C 1.50706 * 109.41152 * 176.29989 * 5 4 3 7 7 O 1.21276 * 120.00086 * 120.35017 * 6 5 4 8 8 N 1.34773 * 119.99754 * 300.35511 * 6 5 4 9 9 C 1.46495 * 119.99904 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47357 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47393 * 299.99794 * 10 9 8 12 12 C 1.53007 * 109.47039 * 59.99553 * 10 9 8 13 13 C 1.53004 * 109.47432 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.47004 * 179.97438 * 13 10 9 15 15 H 1.07998 * 119.99998 * 0.02562 * 14 13 10 16 16 C 1.37876 * 119.99881 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99981 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00214 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46984 * 90.00213 * 18 16 14 20 20 H 1.48501 * 109.47471 * 210.00086 * 18 16 14 21 21 H 1.48501 * 109.47228 * 330.00158 * 18 16 14 22 22 C 1.52960 * 109.81835 * 296.40343 * 5 4 3 23 23 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 24 24 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 25 25 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 26 26 H 1.09007 * 109.62335 * 248.63908 * 3 2 1 27 27 H 1.08996 * 109.62750 * 9.20445 * 3 2 1 28 28 H 1.09002 * 109.47375 * 294.64440 * 4 3 2 29 29 H 1.08999 * 109.48358 * 174.60290 * 4 3 2 30 30 H 1.09002 * 109.41534 * 56.51334 * 5 4 3 31 31 H 0.96998 * 120.00428 * 359.97438 * 8 6 5 32 32 H 1.09006 * 109.47196 * 299.99672 * 9 8 6 33 33 H 1.09004 * 109.47664 * 59.99654 * 9 8 6 34 34 H 1.09006 * 109.46881 * 59.99617 * 11 10 9 35 35 H 1.08996 * 109.47376 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.46750 * 300.00030 * 11 10 9 37 37 H 1.08997 * 109.46801 * 60.00216 * 12 10 9 38 38 H 1.08996 * 109.47096 * 180.02562 * 12 10 9 39 39 H 1.08993 * 109.47426 * 300.00257 * 12 10 9 40 40 H 1.08999 * 109.47075 * 299.99855 * 13 10 9 41 41 H 1.08995 * 109.46497 * 60.00261 * 13 10 9 42 42 H 0.97006 * 120.00260 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.48090 * 303.61775 * 22 5 4 44 44 H 1.08998 * 109.49622 * 183.58621 * 22 5 4 45 45 H 1.09001 * 109.62477 * 350.79006 * 23 2 1 46 46 H 1.08996 * 109.62421 * 111.17059 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2488 1.1302 5 6 3.9848 -0.0024 0.9725 6 6 5.0588 -0.0050 2.0297 7 8 5.1245 -0.9180 2.8252 8 7 5.9462 1.0075 2.0911 9 6 6.9906 1.0048 3.1184 10 6 7.8577 2.2563 2.9677 11 6 8.5057 2.2640 1.5817 12 6 6.9859 3.5033 3.1299 13 6 8.9481 2.2538 4.0410 14 6 9.8024 3.4863 3.8920 15 1 9.5887 4.2002 3.1103 16 6 10.8568 3.7025 4.7537 17 7 11.1172 2.8329 5.7053 18 14 11.9162 5.2298 4.5687 19 1 11.3457 6.3300 5.3868 20 1 13.2963 4.9339 5.0304 21 1 11.9489 5.6396 3.1417 22 6 3.1191 -1.2543 1.1242 23 6 2.0857 -1.2987 -0.0062 24 1 -0.5400 -0.9354 -0.0046 25 1 -0.5399 0.9352 0.0045 26 1 2.5945 1.4211 -0.9562 27 1 1.4034 2.1326 0.1642 28 1 2.6057 1.2169 2.0911 29 1 3.7509 2.1359 1.0846 30 1 4.4488 -0.0001 -0.0138 31 1 5.8939 1.7377 1.4547 32 1 6.5290 0.9990 4.1059 33 1 7.6120 0.1167 3.0027 34 1 7.7286 2.2660 0.8173 35 1 9.1230 3.1558 1.4742 36 1 9.1268 1.3756 1.4662 37 1 6.5243 3.4978 4.1172 38 1 7.6035 4.3949 3.0220 39 1 6.2089 3.5053 2.3655 40 1 8.4861 2.2487 5.0282 41 1 9.5691 1.3655 3.9257 42 1 11.8588 2.9851 6.3118 43 1 2.6057 -1.2270 2.0854 44 1 3.7506 -2.1414 1.0745 45 1 1.4034 -2.1335 0.1541 46 1 2.5918 -1.4183 -0.9642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890945260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:54 Heat of formation + Delta-G solvation = -63.111689 kcal Electronic energy + Delta-G solvation = -22201.370964 eV Core-core repulsion = 19089.537510 eV Total energy + Delta-G solvation = -3111.833454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.16240 -38.15602 -36.95217 -33.68928 -32.96976 -32.02756 -31.22789 -27.57712 -26.97099 -26.52522 -25.68684 -23.21290 -23.00703 -21.72897 -19.94296 -18.68620 -18.27315 -16.89603 -16.32710 -15.62095 -15.25412 -15.10206 -14.60285 -14.50499 -14.14939 -13.89470 -13.73895 -13.30581 -13.08503 -12.83763 -12.67773 -12.52708 -12.09614 -12.05950 -11.85017 -11.55229 -11.29626 -11.14895 -11.02478 -10.86196 -10.79031 -10.64786 -10.43555 -10.38185 -10.25914 -9.88506 -9.67493 -9.28943 -9.12320 -8.92573 -8.69578 -8.36734 -6.00663 -4.02072 2.00010 2.84105 3.30126 3.37136 3.38536 3.46739 4.33650 4.44293 4.48676 4.70568 4.78743 4.88178 5.04895 5.16896 5.18320 5.32455 5.34822 5.47037 5.51289 5.55766 5.62254 5.63933 5.67049 5.74552 5.85105 5.87825 5.98726 6.13989 6.16017 6.22050 6.29466 6.38706 6.40623 6.57504 6.61765 6.62441 6.77404 7.05344 7.06318 7.12171 7.63303 7.75681 7.77686 7.98041 8.39314 8.47063 9.02772 9.61096 11.10808 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.039754 B = 0.003114 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.167726 B = 8988.849330 C = 9361.501601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.085 4.085 4 C -0.108 4.108 5 C -0.107 4.107 6 C 0.510 3.490 7 O -0.546 6.546 8 N -0.721 5.721 9 C 0.127 3.873 10 C -0.072 4.072 11 C -0.127 4.127 12 C -0.126 4.126 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.095 4.095 23 C -0.087 4.087 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.397 0.603 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.260 0.740 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.154 -3.632 -13.267 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.118 4.118 3 C -0.122 4.122 4 C -0.145 4.145 5 C -0.128 4.128 6 C 0.295 3.705 7 O -0.424 6.424 8 N -0.373 5.373 9 C 0.004 3.996 10 C -0.073 4.073 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.002 4.002 14 C -0.549 4.549 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.133 4.133 23 C -0.124 4.124 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.233 0.767 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.955 -4.323 -12.530 22.318 hybrid contribution 0.681 1.201 -0.255 1.404 sum -17.274 -3.122 -12.785 21.717 Atomic orbital electron populations 1.23617 0.94998 1.01757 1.03381 1.22011 0.95090 0.95934 0.98776 1.20819 0.97477 0.94916 0.98974 1.21545 0.97075 0.96402 0.99527 1.21331 0.95106 0.97503 0.98895 1.20587 0.82328 0.82064 0.85481 1.90686 1.73686 1.35877 1.42101 1.46235 1.31547 1.24468 1.35006 1.21617 0.88281 0.99311 0.90343 1.20901 0.96094 0.92109 0.98177 1.21759 0.99192 1.02665 0.94779 1.21756 0.97985 0.98928 0.99706 1.19091 0.91501 0.97464 0.92111 1.21181 1.12654 1.06484 1.14614 0.92266 1.25016 0.97608 0.96436 0.95458 1.69966 1.29924 1.35422 1.18081 0.86649 0.79894 0.83494 0.78271 1.20773 1.21334 1.19948 1.21333 0.96417 0.96731 0.98789 1.20857 0.97616 0.94750 0.99189 0.88550 0.88552 0.90634 0.90952 0.91098 0.91028 0.88688 0.76732 0.91904 0.91914 0.95288 0.91438 0.93384 0.93382 0.91456 0.95288 0.96365 0.96355 0.93032 0.91117 0.90793 0.91074 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 13.99 29.01 0.41 -1.14 16 2 C -0.12 -0.98 5.35 -100.51 -0.54 -1.51 16 3 C -0.08 -0.65 6.03 -27.49 -0.17 -0.81 16 4 C -0.11 -0.97 5.14 -26.63 -0.14 -1.11 16 5 C -0.11 -1.12 2.42 -91.81 -0.22 -1.34 16 6 C 0.51 7.45 7.15 -10.98 -0.08 7.37 16 7 O -0.55 -10.25 15.94 5.56 0.09 -10.16 16 8 N -0.72 -10.28 4.83 -60.29 -0.29 -10.57 16 9 C 0.13 2.25 4.56 -4.05 -0.02 2.23 16 10 C -0.07 -1.36 0.54 -154.50 -0.08 -1.44 16 11 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 12 C -0.13 -2.18 8.05 37.16 0.30 -1.89 16 13 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 14 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 15 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.09 -0.99 4.54 -26.63 -0.12 -1.11 16 23 C -0.09 -0.72 6.03 -27.48 -0.17 -0.88 16 24 H 0.10 0.67 7.92 -52.48 -0.42 0.26 16 25 H 0.10 0.66 7.92 -52.49 -0.42 0.25 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.59 7.44 -51.93 -0.39 0.21 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.40 4.75 5.51 -40.82 -0.22 4.53 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 35 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 39 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.83 8.00 -51.93 -0.42 0.42 16 45 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -30.56 356.99 -8.27 -38.83 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.16 Total: 1.18 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.00 Total: -15.08 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.45 Total: -36.26 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.56 -8.27 -38.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890945260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.283 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds